Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 03:11:11 UTC
Update Date2022-03-07 02:57:02 UTC
HMDB IDHMDB0041496
Secondary Accession Numbers
  • HMDB41496
Metabolite Identification
Common NameGibberellin A97
DescriptionGibberellin A97, also known as GA97, belongs to the class of organic compounds known as c20-gibberellin 6-carboxylic acids. These are c20-gibberellins with a carboxyl group at the 6-position. Based on a literature review a small amount of articles have been published on Gibberellin A97.
Structure
Data?1595351568
Synonyms
ValueSource
(1alpha,3beta,4Aalpha,4bbeta,10beta)-3,7-dihydroxy-1,4a-dimethyl-8-methylenegibbane-1,10-dicarboxylic acidHMDB
(1Α,3β,4aα,4bβ,10β)-3,7-dihydroxy-1,4a-dimethyl-8-methylenegibbane-1,10-dicarboxylic acidHMDB
GA97HMDB
Gibberellin A97HMDB
Chemical FormulaC20H28O6
Average Molecular Weight364.438
Monoisotopic Molecular Weight364.188588622
IUPAC Name(1S,2S,3S,4R,6S,8S,9S,12S)-6,12-dihydroxy-4,8-dimethyl-13-methylidenetetracyclo[10.2.1.0^{1,9}.0^{3,8}]pentadecane-2,4-dicarboxylic acid
Traditional Name(1S,2S,3S,4R,6S,8S,9S,12S)-6,12-dihydroxy-4,8-dimethyl-13-methylidenetetracyclo[10.2.1.0^{1,9}.0^{3,8}]pentadecane-2,4-dicarboxylic acid
CAS Registry Number128533-05-1
SMILES
[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@@]1([H])[C@@]2(C)C[C@H](O)C[C@@]1(C)C(O)=O
InChI Identifier
InChI=1S/C20H28O6/c1-10-6-19-9-20(10,26)5-4-12(19)17(2)7-11(21)8-18(3,16(24)25)14(17)13(19)15(22)23/h11-14,21,26H,1,4-9H2,2-3H3,(H,22,23)(H,24,25)/t11-,12-,13+,14-,17-,18+,19-,20-/m0/s1
InChI KeyDBFXNHHIIKEXPP-JOJUGDBLSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as c20-gibberellin 6-carboxylic acids. These are c20-gibberellins with a carboxyl group at the 6-position.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassDiterpenoids
Direct ParentC20-gibberellin 6-carboxylic acids
Alternative Parents
Substituents
  • Gibberellane-6-carboxylic acid
  • Dicarboxylic acid or derivatives
  • Tertiary alcohol
  • Cyclic alcohol
  • Secondary alcohol
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationRoute of exposureSource
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility1.84 g/LALOGPS
logP0.8ALOGPS
logP1.04ChemAxon
logS-2.3ALOGPS
pKa (Strongest Acidic)4.01ChemAxon
pKa (Strongest Basic)-0.9ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area115.06 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity92.2 m³·mol⁻¹ChemAxon
Polarizability37.91 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-218.72430932474
DeepCCS[M+Na]+193.05930932474
AllCCS[M+H]+184.832859911
AllCCS[M+H-H2O]+182.332859911
AllCCS[M+NH4]+187.232859911
AllCCS[M+Na]+187.832859911
AllCCS[M-H]-188.332859911
AllCCS[M+Na-2H]-188.532859911
AllCCS[M+HCOO]-188.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Gibberellin A97[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@@]1([H])[C@@]2(C)C[C@H](O)C[C@@]1(C)C(O)=O4095.3Standard polar33892256
Gibberellin A97[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@@]1([H])[C@@]2(C)C[C@H](O)C[C@@]1(C)C(O)=O2716.6Standard non polar33892256
Gibberellin A97[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@@]1([H])[C@@]2(C)C[C@H](O)C[C@@]1(C)C(O)=O3002.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Gibberellin A97,1TMS,isomer #1C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O2843.1Semi standard non polar33892256
Gibberellin A97,1TMS,isomer #2C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C2774.1Semi standard non polar33892256
Gibberellin A97,1TMS,isomer #3C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O2785.5Semi standard non polar33892256
Gibberellin A97,1TMS,isomer #4C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O[Si](C)(C)C)[C@H]1[C@@H]3C(=O)O2786.3Semi standard non polar33892256
Gibberellin A97,2TMS,isomer #1C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O2768.7Semi standard non polar33892256
Gibberellin A97,2TMS,isomer #2C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O[Si](C)(C)C)[C@H]1[C@@H]3C(=O)O2784.2Semi standard non polar33892256
Gibberellin A97,2TMS,isomer #3C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C2761.6Semi standard non polar33892256
Gibberellin A97,2TMS,isomer #4C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C2735.2Semi standard non polar33892256
Gibberellin A97,2TMS,isomer #5C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O[Si](C)(C)C)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C2751.2Semi standard non polar33892256
Gibberellin A97,2TMS,isomer #6C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C)C[C@@](C)(C(=O)O[Si](C)(C)C)[C@H]1[C@@H]3C(=O)O2744.2Semi standard non polar33892256
Gibberellin A97,3TMS,isomer #1C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C)C[C@@](C)(C(=O)O[Si](C)(C)C)[C@H]1[C@@H]3C(=O)O2761.5Semi standard non polar33892256
Gibberellin A97,3TMS,isomer #2C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C2756.2Semi standard non polar33892256
Gibberellin A97,3TMS,isomer #3C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O[Si](C)(C)C)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C2759.8Semi standard non polar33892256
Gibberellin A97,3TMS,isomer #4C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C)C[C@@](C)(C(=O)O[Si](C)(C)C)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C2745.8Semi standard non polar33892256
Gibberellin A97,4TMS,isomer #1C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C)C[C@@](C)(C(=O)O[Si](C)(C)C)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C2788.2Semi standard non polar33892256
Gibberellin A97,1TBDMS,isomer #1C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O3065.5Semi standard non polar33892256
Gibberellin A97,1TBDMS,isomer #2C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C3009.9Semi standard non polar33892256
Gibberellin A97,1TBDMS,isomer #3C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C(C)(C)C)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O3003.4Semi standard non polar33892256
Gibberellin A97,1TBDMS,isomer #4C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O[Si](C)(C)C(C)(C)C)[C@H]1[C@@H]3C(=O)O3031.8Semi standard non polar33892256
Gibberellin A97,2TBDMS,isomer #1C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C(C)(C)C)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O3216.4Semi standard non polar33892256
Gibberellin A97,2TBDMS,isomer #2C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O[Si](C)(C)C(C)(C)C)[C@H]1[C@@H]3C(=O)O3245.7Semi standard non polar33892256
Gibberellin A97,2TBDMS,isomer #3C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C3222.7Semi standard non polar33892256
Gibberellin A97,2TBDMS,isomer #4C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C(C)(C)C)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C3184.2Semi standard non polar33892256
Gibberellin A97,2TBDMS,isomer #5C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O[Si](C)(C)C(C)(C)C)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C3209.2Semi standard non polar33892256
Gibberellin A97,2TBDMS,isomer #6C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C(C)(C)C)C[C@@](C)(C(=O)O[Si](C)(C)C(C)(C)C)[C@H]1[C@@H]3C(=O)O3193.9Semi standard non polar33892256
Gibberellin A97,3TBDMS,isomer #1C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C(C)(C)C)C[C@@](C)(C(=O)O[Si](C)(C)C(C)(C)C)[C@H]1[C@@H]3C(=O)O3427.0Semi standard non polar33892256
Gibberellin A97,3TBDMS,isomer #2C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C(C)(C)C)C[C@@](C)(C(=O)O)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C3424.8Semi standard non polar33892256
Gibberellin A97,3TBDMS,isomer #3C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O)C[C@@](C)(C(=O)O[Si](C)(C)C(C)(C)C)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C3440.1Semi standard non polar33892256
Gibberellin A97,3TBDMS,isomer #4C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C(C)(C)C)C[C@@](C)(C(=O)O[Si](C)(C)C(C)(C)C)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C3402.7Semi standard non polar33892256
Gibberellin A97,4TBDMS,isomer #1C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@]1(C)C[C@H](O[Si](C)(C)C(C)(C)C)C[C@@](C)(C(=O)O[Si](C)(C)C(C)(C)C)[C@H]1[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C3622.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Gibberellin A97 GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gibberellin A97 10V, Positive-QTOFsplash10-014i-0009000000-8ba3666cf17107921dc42021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gibberellin A97 20V, Positive-QTOFsplash10-0gb9-0019000000-94091b27aa245c74bad82021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gibberellin A97 40V, Positive-QTOFsplash10-014i-0039000000-f102151d56a2aecfa77a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gibberellin A97 10V, Negative-QTOFsplash10-03di-0009000000-91feade0a2e52da626f82021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gibberellin A97 20V, Negative-QTOFsplash10-03di-0009000000-1a935de3d97f25b335862021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gibberellin A97 40V, Negative-QTOFsplash10-03di-2019000000-34abc9f4e2095b3159162021-09-23Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB021466
KNApSAcK IDC00000298
Chemspider ID103885188
KEGG Compound IDNot Available
BioCyc IDCPD-477
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound25203278
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.