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Showing metabocard for DG(20:0/0:0/20:0) (HMDB0056062)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (132)transporters (1) Show 133 proteinsXML
enzymes (132)transporters (1) Show 133 proteins
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-21 13:15:27 UTC
Update Date2022-11-30 19:10:21 UTC
HMDB IDHMDB0056062
Secondary Accession Numbers
  • HMDB56062
Metabolite Identification
Common NameDG(20:0/0:0/20:0)
DescriptionDG(20:0/0:0/20:0) is a diglyceride, or a diacylglycerol (DAG). It is a glyceride consisting of two fatty acid chains covalently bonded to a glycerol molecule through ester linkages. Diacylglycerols can have many different combinations of fatty acids attached at the C-1 C-2, or C-3 positions. DG(20:0/0:0/20:0), in particular, consists of two chains of arachidic acid at the C-1 and C-3 positions. The arachidic acid moieties are derived from peanut oil. Mono- and diacylglycerols are common food additives used to blend together certain ingredients, such as oil and water, which would not otherwise blend well. Dacylglycerols are often found in bakery products, beverages, ice cream, chewing gum, shortening, whipped toppings, margarine, and confections.
Synthesis of diacylglycerol begins with glycerol-3-phosphate, which is derived primarily from dihydroxyacetone phosphate, a product of glycolysis (usually in the cytoplasm of liver or adipose tissue cells). Glycerol-3-phosphate is first acylated with acyl-coenzyme A (acyl-CoA) to form lysophosphatidic acid, which is then acylated with another molecule of acyl-CoA to yield phosphatidic acid. Phosphatidic acid is then de-phosphorylated to form diacylglycerol.
Diacylglycerols are precursors to triacylglycerols (triglyceride), which are formed by the addition of a third fatty acid to the diacylglycerol under the catalysis of diglyceride acyltransferase. Since diacylglycerols are synthesized via phosphatidic acid, they will usually contain a saturated fatty acid at the C-1 position on the glycerol moiety and an unsaturated fatty acid at the C-3 position.
Structure
Data?1563865428
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0056062 (DG(20:0/0:0/20:0))

DG(20:0/0:0/20:0)
  Mrv1652304052007472D          

 49 48  0  0  0  0            999 V2000
   24.1443   -6.4802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.1832   -7.0352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.2219   -6.4804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.1442   -5.3703    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.2606   -7.0352    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.4330   -8.1452    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.9384   -8.1590    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   23.4298   -4.9579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4298   -4.1865    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.7156   -5.3710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0015   -4.9579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.2873   -5.3710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5732   -4.9579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.8591   -5.3710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1450   -4.9579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4308   -5.3710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.7167   -4.9579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.0025   -5.3710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2884   -4.9579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5742   -5.3710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8601   -4.9579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1460   -5.3710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4318   -4.9579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7177   -5.3710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0036   -4.9579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2894   -5.3710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5753   -4.9579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8611   -5.3710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5462   -6.6227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5462   -5.8512    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.8320   -7.0358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1179   -6.6227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4038   -7.0358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6897   -6.6227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9755   -7.0358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2614   -6.6227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5472   -7.0358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8331   -6.6227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1189   -7.0358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4048   -6.6227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6907   -7.0358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9766   -6.6227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2624   -7.0358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5483   -6.6227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8341   -7.0358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1200   -6.6227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4058   -7.0358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6917   -6.6227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9776   -7.0358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  0  0  0  0
  2  7  1  0  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  4  8  1  0  0  0  0
  5  3  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 29  5  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
M  END
Download

3D MOL for HMDB0056062 (DG(20:0/0:0/20:0))

HMDB0056062
     RDKit          3D
DG(20:0/0:0/20:0)
132131  0  0  0  0  0  0  0  0999 V2000
  -18.1618    1.5224   -1.0629 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.8107    0.9843   -1.5623 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.7709    1.9270   -1.0434 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3820    1.5794   -1.4437 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.9532    0.2039   -0.9502 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.0106    0.1007    0.5311 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5960   -1.1216    1.1996 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2790   -1.6557    1.3980 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2242   -1.9360    0.4300 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4785   -0.8215   -0.2124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7639    0.0490    0.7918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7904   -0.5325    1.6884 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5280   -1.1483    1.2844 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4672   -2.2933    0.3673 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0060   -2.7595    0.3035 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0437   -1.7001   -0.1640 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3115   -1.1806   -1.5159 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3865   -0.1134   -1.9637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9476   -0.4536   -2.0755 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2865   -0.7915   -0.8003 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4750   -1.7875   -0.7451 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4711   -0.1120    0.3612 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9599   -0.2614    1.6167 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4833   -0.0125    1.7040 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2151   -0.9021    0.9099 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1243    1.3848    1.3156 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2401    1.6377    1.5687 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7423    1.6418    2.8397 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8947    1.4060    3.7794 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1065    1.8762    3.2911 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1068    2.2494    2.2728 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3249    1.2321    1.2004 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4330    1.7937    0.2864 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6932    0.7782   -0.7805 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7910    1.2687   -1.6920 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0359    1.5057   -0.8830 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4551    0.2533   -0.1830 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7720   -0.8334   -1.1467 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9193   -0.5241   -2.0866 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1951   -0.2525   -1.3047 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5769   -1.4340   -0.4602 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8278   -1.1637    0.3235 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0224   -0.8656   -0.5269 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1929   -0.6337    0.4460 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4091   -0.3396   -0.3738 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6310   -0.0923    0.4931 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.8456    0.1968   -0.3677 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6223    1.4202   -1.2194 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.8459    0.7131   -0.8139 H   0  0  0  0  0  0  0  0  0  0  0  0
  -18.0117    2.1632   -0.1722 H   0  0  0  0  0  0  0  0  0  0  0  0
  -18.5919    2.1969   -1.8551 H   0  0  0  0  0  0  0  0  0  0  0  0
  -16.7399   -0.0410   -1.1079 H   0  0  0  0  0  0  0  0  0  0  0  0
  -16.8097    0.9379   -2.6704 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.8943    2.0362    0.0640 H   0  0  0  0  0  0  0  0  0  0  0  0
  -16.0098    2.9343   -1.4949 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7018    2.3633   -1.0793 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3759    1.4961   -2.5652 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.7944   -0.4815   -1.3673 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0944   -0.1041   -1.4927 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1178    0.2655    0.7924 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5591    1.0414    1.0144 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.1192   -1.1609    2.2596 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2305   -1.9853    0.7244 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7588   -1.0999    2.3130 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.4504   -2.6702    1.9797 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7274   -2.4866   -0.4450 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5113   -2.7526    0.7864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7409   -1.2639   -0.9353 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1319   -0.2212   -0.8485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3610    0.9227    0.2308 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5957    0.5087    1.4111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3342   -1.2163    2.4566 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4865    0.3095    2.4223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8167   -0.3606    0.8326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9674   -1.4295    2.2179 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0463   -3.1771    0.6620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6694   -2.0435   -0.7232 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9723   -3.5693   -0.4772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6590   -3.1302    1.2866 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0590   -2.2377   -0.2003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9617   -0.9605    0.6248 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3663   -0.7987   -1.6406 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2924   -2.0305   -2.2834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7478    0.3748   -2.9209 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4249    0.7814   -1.2435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4007    0.3795   -2.5977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8711   -1.3588   -2.7352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4702    0.4473    2.3256 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1605   -1.2798    2.0649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1533   -0.2475    2.7608 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9979   -0.4663    0.4921 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7877    2.0734    1.9232 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3986    1.6215    0.2622 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0790    2.6870    4.0888 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4692    0.9303    3.7945 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0869    2.3959    2.7872 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8607    3.2376    1.8113 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4705    1.0658    0.5360 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6225    0.2715    1.6262 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1349    2.7539   -0.1480 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3407    1.9954    0.9162 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7548    0.7278   -1.4003 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8718   -0.2250   -0.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9388    0.5300   -2.4996 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4156    2.2360   -2.1294 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9389    2.3514   -0.1612 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0056062 (DG(20:0/0:0/20:0))

DG(20:0/0:0/20:0)
  Mrv1652304052007472D          

 49 48  0  0  0  0            999 V2000
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 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0056062

> <DATABASE_NAME>
hmdb

> <SMILES>
[H]C(O)(COC(=O)CCCCCCCCCCCCCCCCCCC)COC(=O)CCCCCCCCCCCCCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C43H84O5/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-35-37-42(45)47-39-41(44)40-48-43(46)38-36-34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h41,44H,3-40H2,1-2H3

> <INCHI_KEY>
VFEKBHKRXKVKGN-UHFFFAOYSA-N

> <FORMULA>
C43H84O5

> <MOLECULAR_WEIGHT>
681.1241

> <EXACT_MASS>
680.631875798

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
132

> <JCHEM_AVERAGE_POLARIZABILITY>
93.04981513585462

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-hydroxy-3-(icosanoyloxy)propyl icosanoate

> <ALOGPS_LOGP>
10.64

> <JCHEM_LOGP>
15.559643102000003

> <ALOGPS_LOGS>
-7.66

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.631221427732253

> <JCHEM_PKA_STRONGEST_BASIC>
-3.3975037475099112

> <JCHEM_POLAR_SURFACE_AREA>
72.83

> <JCHEM_REFRACTIVITY>
204.50689999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
42

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.49e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-hydroxy-3-(icosanoyloxy)propyl icosanoate

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0056062 (DG(20:0/0:0/20:0))

HMDB0056062
     RDKit          3D
DG(20:0/0:0/20:0)
132131  0  0  0  0  0  0  0  0999 V2000
  -18.1618    1.5224   -1.0629 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.8107    0.9843   -1.5623 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.7709    1.9270   -1.0434 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3820    1.5794   -1.4437 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.9532    0.2039   -0.9502 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.0106    0.1007    0.5311 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5960   -1.1216    1.1996 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2790   -1.6557    1.3980 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2242   -1.9360    0.4300 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4785   -0.8215   -0.2124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7639    0.0490    0.7918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7904   -0.5325    1.6884 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.3865   -0.1134   -1.9637 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.4833   -0.0125    1.7040 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2151   -0.9021    0.9099 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1243    1.3848    1.3156 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2401    1.6377    1.5687 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7423    1.6418    2.8397 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8947    1.4060    3.7794 O   0  0  0  0  0  0  0  0  0  0  0  0
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   18.6223    1.4202   -1.2194 C   0  0  0  0  0  0  0  0  0  0  0  0
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   14.2768   -1.7718   -1.1269 H   0  0  0  0  0  0  0  0  0  0  0  0
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   17.8291   -1.0071    1.1007 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.0687   -0.7099   -0.9711 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.6922    0.3592    0.3572 H   0  0  0  0  0  0  0  0  0  0  0  0
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   19.5572    2.0526   -1.2196 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for HMDB0056062 (DG(20:0/0:0/20:0))

HEADER    PROTEIN                                 05-APR-20   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: DG(20:0/0:0/20:0)                                 
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-APR-20         0                                  
HETATM    1  C   UNK     0      45.069 -12.096   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      43.275 -13.132   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      41.481 -12.097   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      45.069 -10.025   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      39.686 -13.132   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      41.875 -15.204   0.000  0.00  0.00           O+0
HETATM    7  H   UNK     0      44.685 -15.230   0.000  0.00  0.00           H+0
HETATM    8  C   UNK     0      43.736  -9.255   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      43.736  -7.815   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      42.402 -10.026   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      41.069  -9.255   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      39.736 -10.026   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      38.403  -9.255   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      37.070 -10.026   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      35.737  -9.255   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      34.404 -10.026   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      33.071  -9.255   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      31.738 -10.026   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      30.405  -9.255   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      29.072 -10.026   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      27.739  -9.255   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      26.406 -10.026   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      25.073  -9.255   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      23.740 -10.026   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      22.407  -9.255   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      21.074 -10.026   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      19.741  -9.255   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      18.407 -10.026   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      38.353 -12.362   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      38.353 -10.922   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      37.020 -13.133   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      35.687 -12.362   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      34.354 -13.133   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      33.021 -12.362   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      31.688 -13.133   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      30.355 -12.362   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      29.021 -13.133   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      27.688 -12.362   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      26.355 -13.133   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      25.022 -12.362   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      23.689 -13.133   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      22.356 -12.362   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      21.023 -13.133   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      19.690 -12.362   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      18.357 -13.133   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      17.024 -12.362   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      15.691 -13.133   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      14.358 -12.362   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      13.025 -13.133   0.000  0.00  0.00           C+0
CONECT    1    2    4                                                       
CONECT    2    1    6    7    3                                             
CONECT    3    2    5                                                       
CONECT    4    1    8                                                       
CONECT    5    3   29                                                       
CONECT    6    2                                                            
CONECT    7    2                                                            
CONECT    8    4    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29    5   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48                                                            
MASTER        0    0    0    0    0    0    0    0   49    0   96    0
END
Download

3D PDB for HMDB0056062 (DG(20:0/0:0/20:0))

COMPND    HMDB0056062
HETATM    1  C1  UNL     1     -18.162   1.522  -1.063  1.00  0.00           C  
HETATM    2  C2  UNL     1     -16.811   0.984  -1.562  1.00  0.00           C  
HETATM    3  C3  UNL     1     -15.771   1.927  -1.043  1.00  0.00           C  
HETATM    4  C4  UNL     1     -14.382   1.579  -1.444  1.00  0.00           C  
HETATM    5  C5  UNL     1     -13.953   0.204  -0.950  1.00  0.00           C  
HETATM    6  C6  UNL     1     -14.011   0.101   0.531  1.00  0.00           C  
HETATM    7  C7  UNL     1     -13.596  -1.122   1.200  1.00  0.00           C  
HETATM    8  C8  UNL     1     -12.279  -1.656   1.398  1.00  0.00           C  
HETATM    9  C9  UNL     1     -11.224  -1.936   0.430  1.00  0.00           C  
HETATM   10  C10 UNL     1     -10.479  -0.822  -0.212  1.00  0.00           C  
HETATM   11  C11 UNL     1      -9.764   0.049   0.792  1.00  0.00           C  
HETATM   12  C12 UNL     1      -8.790  -0.533   1.688  1.00  0.00           C  
HETATM   13  C13 UNL     1      -7.528  -1.148   1.284  1.00  0.00           C  
HETATM   14  C14 UNL     1      -7.467  -2.293   0.367  1.00  0.00           C  
HETATM   15  C15 UNL     1      -6.006  -2.759   0.304  1.00  0.00           C  
HETATM   16  C16 UNL     1      -5.044  -1.700  -0.164  1.00  0.00           C  
HETATM   17  C17 UNL     1      -5.311  -1.181  -1.516  1.00  0.00           C  
HETATM   18  C18 UNL     1      -4.386  -0.113  -1.964  1.00  0.00           C  
HETATM   19  C19 UNL     1      -2.948  -0.454  -2.075  1.00  0.00           C  
HETATM   20  C20 UNL     1      -2.286  -0.791  -0.800  1.00  0.00           C  
HETATM   21  O1  UNL     1      -1.475  -1.787  -0.745  1.00  0.00           O  
HETATM   22  O2  UNL     1      -2.471  -0.112   0.361  1.00  0.00           O  
HETATM   23  C21 UNL     1      -1.960  -0.261   1.617  1.00  0.00           C  
HETATM   24  C22 UNL     1      -0.483  -0.012   1.704  1.00  0.00           C  
HETATM   25  O3  UNL     1       0.215  -0.902   0.910  1.00  0.00           O  
HETATM   26  C23 UNL     1      -0.124   1.385   1.316  1.00  0.00           C  
HETATM   27  O4  UNL     1       1.240   1.638   1.569  1.00  0.00           O  
HETATM   28  C24 UNL     1       1.742   1.642   2.840  1.00  0.00           C  
HETATM   29  O5  UNL     1       0.895   1.406   3.779  1.00  0.00           O  
HETATM   30  C25 UNL     1       3.106   1.876   3.291  1.00  0.00           C  
HETATM   31  C26 UNL     1       4.107   2.249   2.273  1.00  0.00           C  
HETATM   32  C27 UNL     1       4.325   1.232   1.200  1.00  0.00           C  
HETATM   33  C28 UNL     1       5.433   1.794   0.286  1.00  0.00           C  
HETATM   34  C29 UNL     1       5.693   0.778  -0.780  1.00  0.00           C  
HETATM   35  C30 UNL     1       6.791   1.269  -1.692  1.00  0.00           C  
HETATM   36  C31 UNL     1       8.036   1.506  -0.883  1.00  0.00           C  
HETATM   37  C32 UNL     1       8.455   0.253  -0.183  1.00  0.00           C  
HETATM   38  C33 UNL     1       8.772  -0.833  -1.147  1.00  0.00           C  
HETATM   39  C34 UNL     1       9.919  -0.524  -2.087  1.00  0.00           C  
HETATM   40  C35 UNL     1      11.195  -0.252  -1.305  1.00  0.00           C  
HETATM   41  C36 UNL     1      11.577  -1.434  -0.460  1.00  0.00           C  
HETATM   42  C37 UNL     1      12.828  -1.164   0.324  1.00  0.00           C  
HETATM   43  C38 UNL     1      14.022  -0.866  -0.527  1.00  0.00           C  
HETATM   44  C39 UNL     1      15.193  -0.634   0.446  1.00  0.00           C  
HETATM   45  C40 UNL     1      16.409  -0.340  -0.374  1.00  0.00           C  
HETATM   46  C41 UNL     1      17.631  -0.092   0.493  1.00  0.00           C  
HETATM   47  C42 UNL     1      18.846   0.197  -0.368  1.00  0.00           C  
HETATM   48  C43 UNL     1      18.622   1.420  -1.219  1.00  0.00           C  
HETATM   49  H1  UNL     1     -18.846   0.713  -0.814  1.00  0.00           H  
HETATM   50  H2  UNL     1     -18.012   2.163  -0.172  1.00  0.00           H  
HETATM   51  H3  UNL     1     -18.592   2.197  -1.855  1.00  0.00           H  
HETATM   52  H4  UNL     1     -16.740  -0.041  -1.108  1.00  0.00           H  
HETATM   53  H5  UNL     1     -16.810   0.938  -2.670  1.00  0.00           H  
HETATM   54  H6  UNL     1     -15.894   2.036   0.064  1.00  0.00           H  
HETATM   55  H7  UNL     1     -16.010   2.934  -1.495  1.00  0.00           H  
HETATM   56  H8  UNL     1     -13.702   2.363  -1.079  1.00  0.00           H  
HETATM   57  H9  UNL     1     -14.376   1.496  -2.565  1.00  0.00           H  
HETATM   58  H10 UNL     1     -14.794  -0.481  -1.367  1.00  0.00           H  
HETATM   59  H11 UNL     1     -13.094  -0.104  -1.493  1.00  0.00           H  
HETATM   60  H12 UNL     1     -15.118   0.266   0.792  1.00  0.00           H  
HETATM   61  H13 UNL     1     -13.559   1.041   1.014  1.00  0.00           H  
HETATM   62  H14 UNL     1     -14.119  -1.161   2.260  1.00  0.00           H  
HETATM   63  H15 UNL     1     -14.231  -1.985   0.724  1.00  0.00           H  
HETATM   64  H16 UNL     1     -11.759  -1.100   2.313  1.00  0.00           H  
HETATM   65  H17 UNL     1     -12.450  -2.670   1.980  1.00  0.00           H  
HETATM   66  H18 UNL     1     -11.727  -2.487  -0.445  1.00  0.00           H  
HETATM   67  H19 UNL     1     -10.511  -2.753   0.786  1.00  0.00           H  
HETATM   68  H20 UNL     1      -9.741  -1.264  -0.935  1.00  0.00           H  
HETATM   69  H21 UNL     1     -11.132  -0.221  -0.849  1.00  0.00           H  
HETATM   70  H22 UNL     1      -9.361   0.923   0.231  1.00  0.00           H  
HETATM   71  H23 UNL     1     -10.596   0.509   1.411  1.00  0.00           H  
HETATM   72  H24 UNL     1      -9.334  -1.216   2.457  1.00  0.00           H  
HETATM   73  H25 UNL     1      -8.486   0.310   2.422  1.00  0.00           H  
HETATM   74  H26 UNL     1      -6.817  -0.361   0.833  1.00  0.00           H  
HETATM   75  H27 UNL     1      -6.967  -1.429   2.218  1.00  0.00           H  
HETATM   76  H28 UNL     1      -8.046  -3.177   0.662  1.00  0.00           H  
HETATM   77  H29 UNL     1      -7.669  -2.044  -0.723  1.00  0.00           H  
HETATM   78  H30 UNL     1      -5.972  -3.569  -0.477  1.00  0.00           H  
HETATM   79  H31 UNL     1      -5.659  -3.130   1.287  1.00  0.00           H  
HETATM   80  H32 UNL     1      -4.059  -2.238  -0.200  1.00  0.00           H  
HETATM   81  H33 UNL     1      -4.962  -0.961   0.625  1.00  0.00           H  
HETATM   82  H34 UNL     1      -6.366  -0.799  -1.641  1.00  0.00           H  
HETATM   83  H35 UNL     1      -5.292  -2.030  -2.283  1.00  0.00           H  
HETATM   84  H36 UNL     1      -4.748   0.375  -2.921  1.00  0.00           H  
HETATM   85  H37 UNL     1      -4.425   0.781  -1.244  1.00  0.00           H  
HETATM   86  H38 UNL     1      -2.401   0.379  -2.598  1.00  0.00           H  
HETATM   87  H39 UNL     1      -2.871  -1.359  -2.735  1.00  0.00           H  
HETATM   88  H40 UNL     1      -2.470   0.447   2.326  1.00  0.00           H  
HETATM   89  H41 UNL     1      -2.161  -1.280   2.065  1.00  0.00           H  
HETATM   90  H42 UNL     1      -0.153  -0.248   2.761  1.00  0.00           H  
HETATM   91  H43 UNL     1       0.998  -0.466   0.492  1.00  0.00           H  
HETATM   92  H44 UNL     1      -0.788   2.073   1.923  1.00  0.00           H  
HETATM   93  H45 UNL     1      -0.399   1.621   0.262  1.00  0.00           H  
HETATM   94  H46 UNL     1       3.079   2.687   4.089  1.00  0.00           H  
HETATM   95  H47 UNL     1       3.469   0.930   3.794  1.00  0.00           H  
HETATM   96  H48 UNL     1       5.087   2.396   2.787  1.00  0.00           H  
HETATM   97  H49 UNL     1       3.861   3.238   1.811  1.00  0.00           H  
HETATM   98  H50 UNL     1       3.470   1.066   0.536  1.00  0.00           H  
HETATM   99  H51 UNL     1       4.622   0.272   1.626  1.00  0.00           H  
HETATM  100  H52 UNL     1       5.135   2.754  -0.148  1.00  0.00           H  
HETATM  101  H53 UNL     1       6.341   1.995   0.916  1.00  0.00           H  
HETATM  102  H54 UNL     1       4.755   0.728  -1.400  1.00  0.00           H  
HETATM  103  H55 UNL     1       5.872  -0.225  -0.354  1.00  0.00           H  
HETATM  104  H56 UNL     1       6.939   0.530  -2.500  1.00  0.00           H  
HETATM  105  H57 UNL     1       6.416   2.236  -2.129  1.00  0.00           H  
HETATM  106  H58 UNL     1       7.939   2.351  -0.161  1.00  0.00           H  
HETATM  107  H59 UNL     1       8.842   1.818  -1.599  1.00  0.00           H  
HETATM  108  H60 UNL     1       7.659  -0.152   0.505  1.00  0.00           H  
HETATM  109  H61 UNL     1       9.345   0.538   0.445  1.00  0.00           H  
HETATM  110  H62 UNL     1       8.958  -1.800  -0.602  1.00  0.00           H  
HETATM  111  H63 UNL     1       7.883  -1.047  -1.769  1.00  0.00           H  
HETATM  112  H64 UNL     1       9.676   0.353  -2.671  1.00  0.00           H  
HETATM  113  H65 UNL     1      10.072  -1.404  -2.729  1.00  0.00           H  
HETATM  114  H66 UNL     1      11.999  -0.084  -2.059  1.00  0.00           H  
HETATM  115  H67 UNL     1      11.099   0.660  -0.708  1.00  0.00           H  
HETATM  116  H68 UNL     1      10.785  -1.705   0.270  1.00  0.00           H  
HETATM  117  H69 UNL     1      11.748  -2.339  -1.086  1.00  0.00           H  
HETATM  118  H70 UNL     1      13.021  -1.974   1.049  1.00  0.00           H  
HETATM  119  H71 UNL     1      12.671  -0.248   0.964  1.00  0.00           H  
HETATM  120  H72 UNL     1      14.277  -1.772  -1.127  1.00  0.00           H  
HETATM  121  H73 UNL     1      13.889  -0.017  -1.203  1.00  0.00           H  
HETATM  122  H74 UNL     1      14.915   0.128   1.178  1.00  0.00           H  
HETATM  123  H75 UNL     1      15.358  -1.579   1.010  1.00  0.00           H  
HETATM  124  H76 UNL     1      16.238   0.576  -0.976  1.00  0.00           H  
HETATM  125  H77 UNL     1      16.604  -1.234  -1.017  1.00  0.00           H  
HETATM  126  H78 UNL     1      17.453   0.787   1.151  1.00  0.00           H  
HETATM  127  H79 UNL     1      17.829  -1.007   1.101  1.00  0.00           H  
HETATM  128  H80 UNL     1      19.069  -0.710  -0.971  1.00  0.00           H  
HETATM  129  H81 UNL     1      19.692   0.359   0.357  1.00  0.00           H  
HETATM  130  H82 UNL     1      18.522   1.085  -2.293  1.00  0.00           H  
HETATM  131  H83 UNL     1      17.737   2.001  -0.944  1.00  0.00           H  
HETATM  132  H84 UNL     1      19.557   2.053  -1.220  1.00  0.00           H  
CONECT    1    2   49   50   51
CONECT    2    3   52   53
CONECT    3    4   54   55
CONECT    4    5   56   57
CONECT    5    6   58   59
CONECT    6    7   60   61
CONECT    7    8   62   63
CONECT    8    9   64   65
CONECT    9   10   66   67
CONECT   10   11   68   69
CONECT   11   12   70   71
CONECT   12   13   72   73
CONECT   13   14   74   75
CONECT   14   15   76   77
CONECT   15   16   78   79
CONECT   16   17   80   81
CONECT   17   18   82   83
CONECT   18   19   84   85
CONECT   19   20   86   87
CONECT   20   21   21   22
CONECT   22   23
CONECT   23   24   88   89
CONECT   24   25   26   90
CONECT   25   91
CONECT   26   27   92   93
CONECT   27   28
CONECT   28   29   29   30
CONECT   30   31   94   95
CONECT   31   32   96   97
CONECT   32   33   98   99
CONECT   33   34  100  101
CONECT   34   35  102  103
CONECT   35   36  104  105
CONECT   36   37  106  107
CONECT   37   38  108  109
CONECT   38   39  110  111
CONECT   39   40  112  113
CONECT   40   41  114  115
CONECT   41   42  116  117
CONECT   42   43  118  119
CONECT   43   44  120  121
CONECT   44   45  122  123
CONECT   45   46  124  125
CONECT   46   47  126  127
CONECT   47   48  128  129
CONECT   48  130  131  132
END
Download

SMILES for HMDB0056062 (DG(20:0/0:0/20:0))

[H]C(O)(COC(=O)CCCCCCCCCCCCCCCCCCC)COC(=O)CCCCCCCCCCCCCCCCCCC
Download

INCHI for HMDB0056062 (DG(20:0/0:0/20:0))

InChI=1S/C43H84O5/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-35-37-42(45)47-39-41(44)40-48-43(46)38-36-34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h41,44H,3-40H2,1-2H3
Download
View in JSmolView Stereo Labels
Synonyms
ValueSource
DAG(40:0)HMDB
DiglycerideHMDB
Diacylglycerol(20:0/0:0/20:0)HMDB
1-Arachidonyl-3-arachidonyl-sn-glycerolHMDB
DiacylglycerolHMDB
Diacylglycerol(40:0)HMDB
DAG(20:0/0:0/20:0)HMDB
1-Eicosanoyl-3-eicosanoyl-sn-glycerolHMDB
DG(40:0)HMDB
DG(20:0/0:0/20:0)Lipid Annotator
2-Hydroxy-3-(icosanoyloxy)propyl icosanoic acidGenerator
Chemical FormulaC43H84O5
Average Molecular Weight681.1241
Monoisotopic Molecular Weight680.631875798
IUPAC Name2-hydroxy-3-(icosanoyloxy)propyl icosanoate
Traditional Name2-hydroxy-3-(icosanoyloxy)propyl icosanoate
CAS Registry NumberNot Available
SMILES
[H]C(O)(COC(=O)CCCCCCCCCCCCCCCCCCC)COC(=O)CCCCCCCCCCCCCCCCCCC
InChI Identifier
InChI=1S/C43H84O5/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-35-37-42(45)47-39-41(44)40-48-43(46)38-36-34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h41,44H,3-40H2,1-2H3
InChI KeyVFEKBHKRXKVKGN-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 1,3-diacylglycerols. These are diacylglycerols containing a glycerol acylated at positions 1 and 3.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerolipids
Sub ClassDiradylglycerols
Direct Parent1,3-diacylglycerols
Alternative Parents
Substituents
  • 1,3-acyl-sn-glycerol
  • Fatty acid ester
  • Fatty acyl
  • Dicarboxylic acid or derivatives
  • Secondary alcohol
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Health effect
Disposition
Biological locationSource
ProcessNot Available
Role
Industrial application
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility1.5e-05 g/LALOGPS
logP10.64ALOGPS
logP15.56ChemAxon
logS-7.7ALOGPS
pKa (Strongest Acidic)13.63ChemAxon
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area72.83 ŲChemAxon
Rotatable Bond Count42ChemAxon
Refractivity204.51 m³·mol⁻¹ChemAxon
Polarizability93.05 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+275.15231661259
DarkChem[M-H]-266.27131661259
DeepCCS[M+H]+266.07530932474
DeepCCS[M-H]-263.71730932474
DeepCCS[M-2H]-297.12530932474
DeepCCS[M+Na]+272.35330932474
AllCCS[M+H]+288.932859911
AllCCS[M+H-H2O]+288.732859911
AllCCS[M+NH4]+289.132859911
AllCCS[M+Na]+289.132859911
AllCCS[M-H]-269.532859911
AllCCS[M+Na-2H]-273.332859911
AllCCS[M+HCOO]-277.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
DG(20:0/0:0/20:0)[H]C(O)(COC(=O)CCCCCCCCCCCCCCCCCCC)COC(=O)CCCCCCCCCCCCCCCCCCC4299.9Standard polar33892256
DG(20:0/0:0/20:0)[H]C(O)(COC(=O)CCCCCCCCCCCCCCCCCCC)COC(=O)CCCCCCCCCCCCCCCCCCC4232.9Standard non polar33892256
DG(20:0/0:0/20:0)[H]C(O)(COC(=O)CCCCCCCCCCCCCCCCCCC)COC(=O)CCCCCCCCCCCCCCCCCCC4893.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - DG(20:0/0:0/20:0) GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - DG(20:0/0:0/20:0) GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:0/0:0/20:0) 10V, Positive-QTOFsplash10-00lr-1047029000-180def44e13181388a882021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:0/0:0/20:0) 20V, Positive-QTOFsplash10-0hmk-5179145000-3ac9bbda2af3a5d62d2a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:0/0:0/20:0) 40V, Positive-QTOFsplash10-0a4l-9415010000-4ce8790f112b39ab30da2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:0/0:0/20:0) 10V, Negative-QTOFsplash10-004i-0009008000-f717acb9d87e7ab905462021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:0/0:0/20:0) 20V, Negative-QTOFsplash10-03dl-2029002000-0be88076484aee52b9c02021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:0/0:0/20:0) 40V, Negative-QTOFsplash10-03du-0029000000-eae6b32ab4152ba7d5c12021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Predicted Concentrations
BiospecimenValueOriginal ageOriginal sexOriginal conditionComments
Blood0.001 +/- 0.001 uMAdult (>18 years old)BothNormal (Most Probable)Calculated using MetaboAnalyst
Blood0.167 +/- 0.058 uMAdult (>18 years old)BothNormal (Upper Limit)Calculated using MetaboAnalyst
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound16041787
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Ghosh S, Strum JC, Bell RM: Lipid biochemistry: functions of glycerolipids and sphingolipids in cellular signaling. FASEB J. 1997 Jan;11(1):45-50. [PubMed:9034165 ]
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Only showing the first 10 proteins. There are 133 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details
1. Diacylglycerol kinase theta
General function:
Involved in diacylglycerol kinase activity
Specific function:
Phosphorylates diacylglycerol (DAG) to generate phosphatidic acid (PA). May regulate the activity of protein kinase C by controlling the balance between these two signaling lipids. Activated in the nucleus in response to alpha-thrombin and nerve growth factor. May be involved in cAMP- induced activation of NR5A1 and subsequent steroidogenic gene transcription by delivering PA as ligand for NR5A1. Acts synergistically with NR5A1 on CYP17 transcriptional activity
Gene Name:
DGKQ
Uniprot ID:
P52824
Molecular weight:
101154.0
Enzyme Details
2. Pancreatic triacylglycerol lipase
General function:
Involved in catalytic activity
Specific function:
Not Available
Gene Name:
PNLIP
Uniprot ID:
P16233
Molecular weight:
51156.48
Enzyme Details
3. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB1
Uniprot ID:
Q9NQ66
Molecular weight:
138565.805
Enzyme Details
4. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This form has a role in retina signal transduction.
Gene Name:
PLCB4
Uniprot ID:
Q15147
Molecular weight:
136105.065
Enzyme Details
5. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB2
Uniprot ID:
Q00722
Molecular weight:
134023.21
Enzyme Details
6. Diacylglycerol kinase gamma
General function:
Involved in diacylglycerol kinase activity
Specific function:
Reverses the normal flow of glycerolipid biosynthesis by phosphorylating diacylglycerol back to phosphatidic acid
Gene Name:
DGKG
Uniprot ID:
P49619
Molecular weight:
89095.3
Enzyme Details
7. Hepatic triacylglycerol lipase
General function:
Involved in catalytic activity
Specific function:
Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.
Gene Name:
LIPC
Uniprot ID:
P11150
Molecular weight:
55914.1
Enzyme Details
8. Lysosomal acid lipase/cholesteryl ester hydrolase
General function:
Involved in lipid metabolic process
Specific function:
Crucial for the intracellular hydrolysis of cholesteryl esters and triglycerides that have been internalized via receptor-mediated endocytosis of lipoprotein particles. Important in mediating the effect of LDL (low density lipoprotein) uptake on suppression of hydroxymethylglutaryl-CoA reductase and activation of endogenous cellular cholesteryl ester formation.
Gene Name:
LIPA
Uniprot ID:
P38571
Molecular weight:
45418.71
Enzyme Details
9. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB3
Uniprot ID:
Q01970
Molecular weight:
138797.725
Enzyme Details
10. Inactive pancreatic lipase-related protein 1
General function:
Involved in catalytic activity
Specific function:
May function as inhibitor of dietary triglyceride digestion. Lacks detectable lipase activity towards triglycerides, diglycerides, phosphatidylcholine, galactolipids or cholesterol esters (in vitro) (By similarity).
Gene Name:
PNLIPRP1
Uniprot ID:
P54315
Molecular weight:
Not Available

Transporters

Enzyme Details
1. Long-chain fatty acid transport protein 1
General function:
Lipid transport and metabolism
Specific function:
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:
SLC27A1
Uniprot ID:
Q6PCB7
Molecular weight:
71107.5
References
  1. Hatch GM, Smith AJ, Xu FY, Hall AM, Bernlohr DA: FATP1 channels exogenous FA into 1,2,3-triacyl-sn-glycerol and down-regulates sphingomyelin and cholesterol metabolism in growing 293 cells. J Lipid Res. 2002 Sep;43(9):1380-9. [PubMed:12235169 ]

Only showing the first 10 proteins. There are 133 proteins in total.

Show all enzymes and transporters