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Human Metabolome Database Version 2.5

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Alanine Metabolism (7 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00123 Glycine Show HMDB00119 Glyoxylic acid Show HMDB00161 L-Alanine Show HMDB00148 L-Glutamic acid Show HMDB00223 Oxalacetic acid Show HMDB00208 Oxoglutaric acid Show HMDB00243 Pyruvic acid Show
Alpha Linolenic Acid and Linoleic Acid Metabolism (9 metabolites)
HMDB ID Name Pathway (highlighted) HMDB02177 8,11,14,17-Eicosatetraenoic acid Show HMDB02925 8,11,14-Eicosatrienoic acid Show HMDB01388 Alpha-Linolenic acid Show HMDB01043 Arachidonic acid Show HMDB02183 Docosahexaenoic acid Show HMDB01999 Eicosapentaenoic acid Show HMDB03073 Gamma-Linolenic acid Show HMDB00673 Linoleic acid Show HMDB06547 Stearidonic acid Show
Amino Sugar Metabolism (15 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03362 Chitin Show HMDB03556 Chitobiose Show HMDB01176 Cytidine monophosphate N-acetylneuraminic acid Show HMDB04270 D-Glucosaminide Show HMDB00124 Fructose 6-phosphate Show HMDB01514 Glucosamine Show HMDB01254 Glucosamine 6-phosphate Show HMDB00215 N-Acetyl-D-glucosamine Show HMDB01062 N-Acetyl-D-Glucosamine 6-Phosphate Show HMDB01121 N-Acetyl-D-mannosamine 6-phosphate Show HMDB01367 N-Acetyl-glucosamine 1-phosphate Show HMDB01129 N-Acetylmannosamine Show HMDB06268 N-Acetylneuraminate 9-phosphate Show HMDB00230 N-Acetylneuraminic acid Show HMDB00290 Uridine diphosphate-N-acetylglucosamine Show
Ammonia Recycling (18 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00538 Adenosine triphosphate Show HMDB01341 ADP Show HMDB00051 Ammonia Show HMDB01096 Carbamoylphosphate Show HMDB01967 Carbon dioxide Show HMDB00123 Glycine Show HMDB00168 L-Asparagine Show HMDB00191 L-Aspartic acid Show HMDB00148 L-Glutamic acid Show HMDB00641 L-Glutamine Show HMDB00177 L-Histidine Show HMDB00187 L-Serine Show HMDB00902 NAD Show HMDB01487 NADH Show HMDB00208 Oxoglutaric acid Show HMDB00243 Pyruvic acid Show HMDB00301 Urocanic acid Show HMDB02111 Water Show
Androgen and Estrogen Metabolism (17 metabolites)
HMDB ID Name Pathway (highlighted) HMDB06224 17-beta-estradiol-3-glucuronide Show HMDB00374 17-Hydroxyprogesterone Show HMDB00363 17a-Hydroxypregnenolone Show HMDB03955 19-Hydroxyandrost-4-ene-3,17-dione Show HMDB06769 19-Hydroxytestosterone Show HMDB06768 19-Oxoandrost-4-ene-3,17-dione Show HMDB03959 19-Oxotestosterone Show HMDB06770 5b-Dihydrotestosterone Show HMDB00053 Androstenedione Show HMDB02759 Androsterone sulfate Show HMDB00077 Dehydroepiandrosterone Show HMDB02961 Dihydrotestosterone Show HMDB00151 Estradiol Show HMDB00145 Estrone Show HMDB01425 Estrone sulfate Show HMDB00234 Testosterone Show HMDB03193 Testosterone glucuronide Show
Arachidonic Acid Metabolism (37 metabolites)
HMDB ID Name Pathway (highlighted) HMDB04684 11,12,15-THETA Show HMDB02314 11,12-DiHETrE Show HMDB04673 11,12-Epoxyeicosatrienoic acid Show HMDB04694 11,14,15-THETA Show HMDB11137 11-Epi-PGF2a Show HMDB04693 11H-14,15-EETA Show HMDB04692 12(R)-HPETE Show HMDB04243 12(S)-HPETE Show HMDB02265 14,15-DiHETrE Show HMDB04264 14,15-epoxy-5,8,11-eicosatrienoic acid Show HMDB03876 15(S)-HETE Show HMDB04244 15(S)-HPETE Show HMDB05050 15H-11,12-EETA Show HMDB04680 16(R)-HETE Show HMDB11136 19(S)-HETE Show HMDB01509 20-Hydroxy-leukotriene B4 Show HMDB05998 20-Hydroxyeicosatetraenoic acid Show HMDB02343 5,6-DHET Show HMDB02190 5,6-Epoxy-8,11,14-eicosatrienoic acid Show HMDB11134 5-HETE Show HMDB11135 5-HPETE Show HMDB10217 5-KETE Show HMDB04699 8(S)-HPETE Show HMDB02311 8,9-DiHETrE Show HMDB02232 8,9-Epoxyeicosatrienoic acid Show HMDB01043 Arachidonic acid Show HMDB01337 Leukotriene A4 Show HMDB01085 Leukotriene B4 Show HMDB01198 Leukotriene C4 Show HMDB03080 Leukotriene D4 Show HMDB01403 Prostaglandin D2 Show HMDB01220 Prostaglandin E2 Show HMDB01139 Prostaglandin F2a Show HMDB03235 Prostaglandin G2 Show HMDB01381 Prostaglandin H2 Show HMDB01335 Prostaglandin I2 Show HMDB01452 Thromboxane A2 Show
Arginine and Proline Metabolism (26 metabolites)
HMDB ID Name Pathway (highlighted) HMDB06875 1-Pyrroline-2-carboxylic acid Show HMDB02234 1-Pyrroline-4-hydroxy-2-carboxylate Show HMDB01301 1-Pyrroline-5-carboxylic acid Show HMDB02070 4-Hydroxy-2-oxoglutaric acid Show HMDB02273 4-Hydroxy-L-glutamic acid Show HMDB06055 4-Hydroxy-L-proline Show HMDB00051 Ammonia Show HMDB00052 Argininosuccinic acid Show HMDB01096 Carbamoylphosphate Show HMDB00904 Citrulline Show HMDB00064 Creatine Show HMDB03411 D-Proline Show HMDB00134 Fumaric acid Show HMDB00128 Guanidoacetic acid Show HMDB06556 L-4-Hydroxyglutamate semialdehyde Show HMDB00517 L-Arginine Show HMDB00191 L-Aspartic acid Show HMDB00148 L-Glutamic acid Show HMDB02104 L-Glutamic-gamma-semialdehyde Show HMDB00162 L-Proline Show HMDB04224 N-(o)-Hydroxyarginine Show HMDB03378 Nitric oxide Show HMDB00214 Ornithine Show HMDB01511 Phosphocreatine Show HMDB01369 Pyrroline hydroxycarboxylic acid Show HMDB00294 Urea Show
Aspartate Metabolism (12 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00536 Adenylsuccinic acid Show HMDB00052 Argininosuccinic acid Show HMDB00056 Beta-Alanine Show HMDB00904 Citrulline Show HMDB06483 D-Aspartic acid Show HMDB00134 Fumaric acid Show HMDB00168 L-Asparagine Show HMDB00191 L-Aspartic acid Show HMDB00691 Malonic acid Show HMDB00812 N-Acetyl-L-aspartic acid Show HMDB00223 Oxalacetic acid Show HMDB00828 Ureidosuccinic acid Show
Beta Oxidation of Very Long Chain Fatty Acids (14 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01206 Acetyl-CoA Show HMDB00511 Capric acid Show HMDB00535 Caproic acid Show HMDB00482 Caprylic acid Show HMDB01423 Coenzyme A Show HMDB00638 Dodecanoic acid Show HMDB02356 Hexacosanoic acid Show HMDB06459 Hexacosanoyl-CoA Show HMDB00201 L-Acetylcarnitine Show HMDB00062 L-Carnitine Show HMDB03571 Lauroyl-CoA Show HMDB02003 Tetracosanoic acid Show HMDB06526 Tetracosanoyl-CoA Show HMDB01521 Tetradecanoyl-CoA Show
Beta-Alanine Metabolism (13 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00002 1,3-Diaminopropane Show HMDB01106 3-Aminopropionaldehyde Show HMDB01206 Acetyl-CoA Show HMDB00194 Anserine Show HMDB00056 Beta-Alanine Show HMDB00033 Carnosine Show HMDB01423 Coenzyme A Show HMDB00076 Dihydrouracil Show HMDB00191 L-Aspartic acid Show HMDB11111 Malonic semialdehyde Show HMDB00210 Pantothenic acid Show HMDB00300 Uracil Show HMDB00026 Ureidopropionic acid Show
Betaine Metabolism (10 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01396 5-Methyltetrahydrofolic acid Show HMDB00043 Betaine Show HMDB01252 Betaine aldehyde Show HMDB00097 Choline Show HMDB00092 Dimethylglycine Show HMDB00742 Homocysteine Show HMDB00696 L-Methionine Show HMDB00939 S-Adenosylhomocysteine Show HMDB01185 S-Adenosylmethionine Show HMDB01846 Tetrahydrofolic acid Show
Bile Acid Biosynthesis (49 metabolites)
HMDB ID Name Pathway (highlighted) HMDB11644 (24R)-Cholest-5-ene-3-beta,7-alpha,24-triol Show HMDB01419 24-Hydroxycholesterol Show HMDB06247 25-Hydroxycholesterol Show HMDB01231 27-Deoxy-5b-cyprinol Show HMDB02103 27-Hydroxycholesterol Show HMDB12456 3 alpha,7 alpha,24-Trihydroxy-5beta-cholestanoyl-CoA Show HMDB12455 3 alpha,7 alpha,26-Trihydroxy-5beta-cholestane Show HMDB12454 3 beta,7 alpha-Dihydroxy-5-cholestenoate Show HMDB12453 3 beta-Hydroxy-5-cholestenoate Show HMDB06890 3a,7a,12a,24-Tetrahydroxy-5b-cholestanoyl-CoA Show HMDB06891 3a,7a,12a-Trihydroxy-5b-24-oxocholestanoyl-CoA Show HMDB06889 3a,7a,12a-Trihydroxy-5b-cholest-24-enoyl-CoA Show HMDB03533 3a,7a,12a-Trihydroxy-5b-cholestan-26-al Show HMDB03873 3a,7a,12a-Trihydroxy-5b-cholestanoic acid Show HMDB06895 3a,7a-Dihydroxy-5b-cholest-24-enoyl-CoA Show HMDB06894 3a,7a-Dihydroxy-5b-cholestan-26-al Show HMDB06893 3a,7a-Dihydroxy-5b-cholestane Show HMDB02159 3a,7a-Dihydroxy-5b-cholestanoyl-CoA Show HMDB00359 3a,7a-Dihydroxycoprostanic acid Show HMDB01457 5-b-Cholestane-3a ,7a ,12a-triol Show HMDB06888 5b-Cyprinol sulfate Show HMDB12457 7 alpha,24-Dihydroxy-4-cholesten-3-one Show HMDB12459 7 alpha,26-Dihydroxy-4-cholesten-3-one Show HMDB12458 7 alpha-Hydroxy-3-oxo-4-cholestenoate Show HMDB06280 7-a,25-Dihydroxycholesterol Show HMDB06281 7-a,27-dihydroxycholesterol Show HMDB06887 7a,12a-Dihydroxy-5b-cholestan-3-one Show HMDB02197 7a,12a-Dihydroxy-cholestene-3-one Show HMDB06892 7a-Hydroxy-5b-cholestan-3-one Show HMDB01993 7a-Hydroxy-cholestene-3-one Show HMDB01496 7a-Hydroxycholesterol Show HMDB00518 Chenodeoxycholic acid Show HMDB00637 Chenodeoxycholic acid glycine conjugate Show HMDB06292 Chenodeoxycholoyl-CoA Show HMDB00067 Cholesterol Show HMDB00619 Cholic acid Show HMDB01374 Choloyl-CoA Show HMDB01423 Coenzyme A Show HMDB00626 Deoxycholic acid Show HMDB00631 Deoxycholic acid glycine conjugate Show HMDB00123 Glycine Show HMDB00138 Glycocholic acid Show HMDB00761 Lithocholic acid Show HMDB00698 Lithocholic acid glycine conjugate Show HMDB00722 Lithocholyltaurine Show HMDB00251 Taurine Show HMDB00951 Taurochenodesoxycholic acid Show HMDB00036 Taurocholic acid Show HMDB00896 Taurodeoxycholic acid Show
Biotin Metabolism (4 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03134 Biocytin Show HMDB00030 Biotin Show HMDB04220 Biotinyl-5'-AMP Show HMDB00182 L-Lysine Show
Butyrate Metabolism (9 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01375 3-Hydroxy-3-methylglutaryl-CoA Show HMDB01166 3-Hydroxybutyryl-CoA Show HMDB00060 Acetoacetic acid Show HMDB01484 Acetoacetyl-CoA Show HMDB01206 Acetyl-CoA Show HMDB00039 Butyric acid Show HMDB01088 Butyryl-CoA Show HMDB01423 Coenzyme A Show HMDB02009 Crotonoyl-CoA Show
Caffeine Metabolism (12 metabolites)
HMDB ID Name Pathway (highlighted) HMDB11103 1,7-Dimethyluric acid Show HMDB03099 1-Methyluric acid Show HMDB10738 1-Methylxanthine Show HMDB01982 3,7-Dimethyluric acid Show HMDB04400 5-Acetylamino-6-amino-3-methyluracil Show HMDB11105 5-Acetylamino-6-formylamino-3-methyluracil Show HMDB11107 7-Methyluric acid Show HMDB01991 7-Methylxanthine Show HMDB01847 Caffeine Show HMDB01860 Paraxanthine Show HMDB02825 Theobromine Show HMDB01889 Theophylline Show
Catecholamine Biosynthesis (5 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00073 Dopamine Show HMDB00068 Epinephrine Show HMDB00181 L-Dopa Show HMDB00158 L-Tyrosine Show HMDB00216 Norepinephrine Show
Citric Acid Cycle (23 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01206 Acetyl-CoA Show HMDB00538 Adenosine triphosphate Show HMDB01341 ADP Show HMDB01967 Carbon dioxide Show HMDB00072 cis-Aconitic acid Show HMDB00094 Citric acid Show HMDB01423 Coenzyme A Show HMDB01248 FAD Show HMDB01197 FADH Show HMDB00134 Fumaric acid Show HMDB01201 Guanosine diphosphate Show HMDB01273 Guanosine triphosphate Show HMDB00595 Hydrogen carbonate Show HMDB00193 Isocitric acid Show HMDB00156 L-Malic acid Show HMDB00902 NAD Show HMDB01487 NADH Show HMDB00223 Oxalacetic acid Show HMDB00208 Oxoglutaric acid Show HMDB00243 Pyruvic acid Show HMDB00254 Succinic acid Show HMDB01022 Succinyl-CoA Show HMDB02111 Water Show
Cysteine Metabolism (8 metabolites)
HMDB ID Name Pathway (highlighted) HMDB02127 3-Mercaptolactic acid Show HMDB01368 3-Mercaptopyruvic acid Show HMDB00996 3-Sulfinoalanine Show HMDB01405 3-Sulfinylpyruvic acid Show HMDB01049 Gamma-Glutamylcysteine Show HMDB00574 L-Cysteine Show HMDB00148 L-Glutamic acid Show HMDB00243 Pyruvic acid Show
D-Arginine and D-Ornithine Metabolism (9 metabolites)
HMDB ID Name Pathway (highlighted) HMDB06875 1-Pyrroline-2-carboxylic acid Show HMDB04225 2-Oxoarginine Show HMDB06272 5-Amino-2-oxopentanoic acid Show HMDB00051 Ammonia Show HMDB03416 D-Arginine Show HMDB03374 D-Ornithine Show HMDB03125 Hydrogen peroxide Show HMDB01377 Oxygen Show HMDB02111 Water Show
Fatty Acid Elongation In Mitochondria (26 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03948 (2E)-Decenoyl-CoA Show HMDB03712 (2E)-Dodecenoyl-CoA Show HMDB03945 (2E)-Hexadecenoyl-CoA Show HMDB03949 (2E)-Octenoyl-CoA Show HMDB03946 (2E)-Tetradecenoyl-CoA Show HMDB03936 (S)-3-Hydroxydodecanoyl-CoA Show HMDB03932 (S)-3-Hydroxyhexadecanoyl-CoA Show HMDB03934 (S)-3-Hydroxytetradecanoyl-CoA Show HMDB03942 (S)-Hydroxyhexanoyl-CoA Show HMDB03940 (S)-Hydroxyoctanoyl-CoA Show HMDB03939 3-Oxodecanoyl-CoA Show HMDB03937 3-Oxododecanoyl-CoA Show HMDB06402 3-Oxohexadecanoyl-CoA Show HMDB03943 3-Oxohexanoyl-CoA Show HMDB03941 3-Oxooctanoyl-CoA Show HMDB03935 3-Oxotetradecanoyl-CoA Show HMDB06272 5-Amino-2-oxopentanoic acid Show HMDB01088 Butyryl-CoA Show HMDB06404 Decanoyl-CoA (n-C10:0CoA) Show HMDB02845 Hexanoyl-CoA Show HMDB03571 Lauroyl-CoA Show HMDB01070 Octanoyl-CoA Show HMDB00220 Palmitic acid Show HMDB01338 Palmityl-CoA Show HMDB01521 Tetradecanoyl-CoA Show HMDB03944 trans-2-Hexenoyl-CoA Show
Fatty acid Metabolism (29 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03948 (2E)-Decenoyl-CoA Show HMDB03945 (2E)-Hexadecenoyl-CoA Show HMDB03949 (2E)-Octenoyl-CoA Show HMDB03946 (2E)-Tetradecenoyl-CoA Show HMDB03936 (S)-3-Hydroxydodecanoyl-CoA Show HMDB03932 (S)-3-Hydroxyhexadecanoyl-CoA Show HMDB03934 (S)-3-Hydroxytetradecanoyl-CoA Show HMDB03938 (S)-Hydroxydecanoyl-CoA Show HMDB03942 (S)-Hydroxyhexanoyl-CoA Show HMDB03940 (S)-Hydroxyoctanoyl-CoA Show HMDB01166 3-Hydroxybutyryl-CoA Show HMDB03937 3-Oxododecanoyl-CoA Show HMDB06402 3-Oxohexadecanoyl-CoA Show HMDB03943 3-Oxohexanoyl-CoA Show HMDB03941 3-Oxooctanoyl-CoA Show HMDB01484 Acetoacetyl-CoA Show HMDB01206 Acetyl-CoA Show HMDB01088 Butyryl-CoA Show HMDB01423 Coenzyme A Show HMDB02009 Crotonoyl-CoA Show HMDB06404 Decanoyl-CoA (n-C10:0CoA) Show HMDB02845 Hexanoyl-CoA Show HMDB00222 L-Palmitoylcarnitine Show HMDB03571 Lauroyl-CoA Show HMDB01070 Octanoyl-CoA Show HMDB00220 Palmitic acid Show HMDB01338 Palmityl-CoA Show HMDB01521 Tetradecanoyl-CoA Show HMDB03944 trans-2-Hexenoyl-CoA Show
Folate and Pterine Biosynthesis (17 metabolites)
HMDB ID Name Pathway (highlighted) HMDB06823 2,5-Diamino-6-(5'-triphosphoryl-3',4'-trihydroxy-2'-oxopentyl)-amino-4-oxopyrimidine Show HMDB02065 6-Lactoyltetrahydropterin Show HMDB02275 7,8-Dihydroneopterin Show HMDB01412 7,8-Dihydropteroic acid Show HMDB00038 Dihydrobiopterin Show HMDB01056 Dihydrofolic acid Show HMDB06824 Dihydroneopterin phosphate Show HMDB00980 Dihydroneopterin triphosphate Show HMDB01195 Dyspropterin Show HMDB00121 Folic acid Show HMDB01273 Guanosine triphosphate Show HMDB02206 Molybdopterin Show HMDB00845 Neopterin Show HMDB00027 Tetrahydrobiopterin Show HMDB01846 Tetrahydrofolic acid Show HMDB06825 Tetrahydrofolyl-[Glu](2) Show HMDB06826 Tetrahydrofolyl-[Glu](n) Show
Fructose and Mannose Degradation (18 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03345 Alpha-D-Glucose Show HMDB06800 Beta-D-Fructose 2-phosphate Show HMDB00660 D-Fructose Show HMDB01047 D-Fructose 2,6-bisphosphate Show HMDB01112 D-Glyceraldehyde 3-phosphate Show HMDB00169 D-Mannose Show HMDB06330 D-Mannose 1-phosphate Show HMDB01473 Dihydroxyacetone phosphate Show HMDB01058 Fructose 1,6-bisphosphate Show HMDB01076 Fructose 1-phosphate Show HMDB00124 Fructose 6-phosphate Show HMDB01265 Fucose 1-phosphate Show HMDB01346 GDP-4-Dehydro-6-deoxy-D-mannose Show HMDB01095 GDP-L-fucose Show HMDB01163 Guanosine diphosphate mannose Show HMDB00174 L-Fucose Show HMDB01078 Mannose 6-phosphate Show HMDB00247 Sorbitol Show
Galactose Metabolism (25 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03345 Alpha-D-Glucose Show HMDB00186 Alpha-Lactose Show HMDB00660 D-Fructose Show HMDB00143 D-Galactose Show HMDB00122 D-Glucose Show HMDB00169 D-Mannose Show HMDB06792 Epimelibiose Show HMDB04162 Galactan Show HMDB05826 Galactinol Show HMDB00107 Galactitol Show HMDB00645 Galactose 1-phosphate Show HMDB06790 Galactosylglycerol Show HMDB01586 Glucose 1-phosphate Show HMDB01401 Glucose 6-phosphate Show HMDB00131 Glycerol Show HMDB01262 Maltotriose Show HMDB06791 Melibiitol Show HMDB00048 Melibiose Show HMDB00211 Myoinositol Show HMDB03213 Raffinose Show HMDB00247 Sorbitol Show HMDB03553 Stachyose Show HMDB00258 Sucrose Show HMDB00286 Uridine diphosphate glucose Show HMDB00302 Uridine diphosphategalactose Show
Gluconeogenesis (27 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01294 2,3-Diphosphoglyceric acid Show HMDB03391 2-Phospho-D-glyceric acid Show HMDB00807 3-Phosphoglyceric acid Show HMDB00538 Adenosine triphosphate Show HMDB01341 ADP Show HMDB03345 Alpha-D-Glucose Show HMDB00516 Beta-D-Glucose Show HMDB03498 Beta-D-Glucose 6-phosphate Show HMDB00122 D-Glucose Show HMDB01112 D-Glyceraldehyde 3-phosphate Show HMDB01473 Dihydroxyacetone phosphate Show HMDB01058 Fructose 1,6-bisphosphate Show HMDB00124 Fructose 6-phosphate Show HMDB01586 Glucose 1-phosphate Show HMDB01401 Glucose 6-phosphate Show HMDB01270 Glyceric acid 1,3-biphosphate Show HMDB01201 Guanosine diphosphate Show HMDB01273 Guanosine triphosphate Show HMDB00190 L-Lactic acid Show HMDB00744 Malic acid Show HMDB00902 NAD Show HMDB01487 NADH Show HMDB00223 Oxalacetic acid Show HMDB00208 Oxoglutaric acid Show HMDB00263 Phosphoenolpyruvic acid Show HMDB00243 Pyruvic acid Show HMDB02111 Water Show
Glucose-Alanine Cycle (12 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00051 Ammonia Show HMDB00122 D-Glucose Show HMDB00161 L-Alanine Show HMDB00148 L-Glutamic acid Show HMDB00902 NAD Show HMDB01487 NADH Show HMDB00217 NADP Show HMDB00221 NADPH Show HMDB00208 Oxoglutaric acid Show HMDB01491 Pyridoxal 5'-phosphate Show HMDB00243 Pyruvic acid Show HMDB02111 Water Show
Glutamate Metabolism (18 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01301 1-Pyrroline-5-carboxylic acid Show HMDB01128 5-Phosphoribosylamine Show HMDB00051 Ammonia Show HMDB01096 Carbamoylphosphate Show HMDB03362 Chitin Show HMDB00112 Gamma-Aminobutyric acid Show HMDB01049 Gamma-Glutamylcysteine Show HMDB01254 Glucosamine 6-phosphate Show HMDB00125 Glutathione Show HMDB01397 Guanosine monophosphate Show HMDB00148 L-Glutamic acid Show HMDB00641 L-Glutamine Show HMDB01062 N-Acetyl-D-Glucosamine 6-Phosphate Show HMDB00902 NAD Show HMDB03337 Oxidized glutathione Show HMDB00208 Oxoglutaric acid Show HMDB00254 Succinic acid Show HMDB01259 Succinic acid semialdehyde Show
Glutathione Metabolism (10 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00078 Cysteinylglycine Show HMDB01049 Gamma-Glutamylcysteine Show HMDB00125 Glutathione Show HMDB00123 Glycine Show HMDB00574 L-Cysteine Show HMDB00148 L-Glutamic acid Show HMDB00217 NADP Show HMDB00221 NADPH Show HMDB03337 Oxidized glutathione Show HMDB00267 Pyroglutamic acid Show
Glycerol Phosphate Shuttle (8 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01112 D-Glyceraldehyde 3-phosphate Show HMDB01473 Dihydroxyacetone phosphate Show HMDB01248 FAD Show HMDB01197 FADH Show HMDB01270 Glyceric acid 1,3-biphosphate Show HMDB00126 Glycerol 3-phosphate Show HMDB00902 NAD Show HMDB01487 NADH Show
Glycerolipid Metabolism (19 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00807 3-Phosphoglyceric acid Show HMDB00538 Adenosine triphosphate Show HMDB01341 ADP Show HMDB07098 DG(16:0/16:0/0:0) Show HMDB01473 Dihydroxyacetone phosphate Show HMDB01051 Glyceraldehyde Show HMDB00139 Glyceric acid Show HMDB00131 Glycerol Show HMDB00126 Glycerol 3-phosphate Show HMDB07853 LPA(16:0/0:0) Show HMDB11533 MG(0:0/16:0/0:0) Show HMDB00902 NAD Show HMDB01487 NADH Show HMDB00217 NADP Show HMDB00221 NADPH Show HMDB00674 PA(16:0/16:0) Show HMDB00220 Palmitic acid Show HMDB01338 Palmityl-CoA Show HMDB05356 TG(16:0/16:0/16:0)[iso] Show
Glycine, Serine and Threonine Metabolism (26 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00005 2-Ketobutyric acid Show HMDB00807 3-Phosphoglyceric acid Show HMDB01533 5,10-Methylene-THF Show HMDB01149 5-Aminolevulinic acid Show HMDB02134 Aminoacetone Show HMDB00051 Ammonia Show HMDB00043 Betaine Show HMDB01967 Carbon dioxide Show HMDB00064 Creatine Show HMDB00092 Dimethylglycine Show HMDB00139 Glyceric acid Show HMDB00123 Glycine Show HMDB00128 Guanidoacetic acid Show HMDB00742 Homocysteine Show HMDB01352 Hydroxypyruvic acid Show HMDB06454 L-2-Amino-3-oxobutanoic acid Show HMDB00099 L-Cystathionine Show HMDB00574 L-Cysteine Show HMDB00187 L-Serine Show HMDB00167 L-Threonine Show HMDB01024 Phosphohydroxypyruvic acid Show HMDB00272 Phosphoserine Show HMDB01167 Pyruvaldehyde Show HMDB00243 Pyruvic acid Show HMDB00271 Sarcosine Show HMDB01846 Tetrahydrofolic acid Show
Glycolysis (21 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01294 2,3-Diphosphoglyceric acid Show HMDB03391 2-Phospho-D-glyceric acid Show HMDB00807 3-Phosphoglyceric acid Show HMDB00538 Adenosine triphosphate Show HMDB01341 ADP Show HMDB03345 Alpha-D-Glucose Show HMDB00516 Beta-D-Glucose Show HMDB03498 Beta-D-Glucose 6-phosphate Show HMDB00122 D-Glucose Show HMDB01112 D-Glyceraldehyde 3-phosphate Show HMDB01473 Dihydroxyacetone phosphate Show HMDB01058 Fructose 1,6-bisphosphate Show HMDB00124 Fructose 6-phosphate Show HMDB01586 Glucose 1-phosphate Show HMDB01401 Glucose 6-phosphate Show HMDB01270 Glyceric acid 1,3-biphosphate Show HMDB00902 NAD Show HMDB01487 NADH Show HMDB00263 Phosphoenolpyruvic acid Show HMDB00243 Pyruvic acid Show HMDB02111 Water Show
Histidine Metabolism (24 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00898 1-Methylhistamine Show HMDB00001 1-Methylhistidine Show HMDB01014 4-Imidazolone-5-propionic acid Show HMDB01534 5-Formiminotetrahydrofolic acid Show HMDB00045 Adenosine monophosphate Show HMDB00538 Adenosine triphosphate Show HMDB01341 ADP Show HMDB01967 Carbon dioxide Show HMDB00033 Carnosine Show HMDB00854 Formiminoglutamic acid Show HMDB00870 Histamine Show HMDB03125 Hydrogen peroxide Show HMDB03905 Imidazole-4-acetaldehyde Show HMDB02024 Imidazoleacetic acid Show HMDB00148 L-Glutamic acid Show HMDB00177 L-Histidine Show HMDB04181 Methylimidazole acetaldehyde Show HMDB02820 Methylimidazoleacetic acid Show HMDB00902 NAD Show HMDB01487 NADH Show HMDB00217 NADP Show HMDB00221 NADPH Show HMDB01846 Tetrahydrofolic acid Show HMDB00301 Urocanic acid Show
Inositol Metabolism (19 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03850 1-Phosphatidyl-1D-myo-inositol 3-phosphate Show HMDB06953 1-Phosphatidyl-D-myo-inositol Show HMDB01187 1D-Myo-inositol 1,3,4,6-tetrakisphosphate Show HMDB04527 1D-Myo-inositol 1,4,5,6-tetrakisphosphate Show HMDB00968 1D-Myo-inositol 1,4-bisphosphate Show HMDB06235 1D-Myo-inositol 3,4-bisphosphate Show HMDB06814 1D-myo-Inositol 3-phosphate Show HMDB00127 D-Glucuronic acid Show HMDB03848 D-Myo-inositol 3,4,5,6-tetrakisphosphate Show HMDB01313 D-Myo-inositol 4-phosphate Show HMDB01401 Glucose 6-phosphate Show HMDB03529 Inositol 1,3,4,5,6-pentakisphosphate Show HMDB01059 Inositol 1,3,4,5-tetraphosphate Show HMDB01143 Inositol 1,3,4-trisphosphate Show HMDB01498 Inositol 1,4,5-trisphosphate Show HMDB00213 Myo-inositol 1-phosphate Show HMDB03502 Myo-inositol hexakisphosphate Show HMDB00211 Myoinositol Show HMDB04249 Phosphatidylinositol-3,4,5-trisphosphate Show
Ketone Body Metabolism (10 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00011 (R)-3-Hydroxybutyric acid Show HMDB01375 3-Hydroxy-3-methylglutaryl-CoA Show HMDB00060 Acetoacetic acid Show HMDB01484 Acetoacetyl-CoA Show HMDB01659 Acetone Show HMDB01206 Acetyl-CoA Show HMDB01967 Carbon dioxide Show HMDB01423 Coenzyme A Show HMDB00902 NAD Show HMDB01487 NADH Show
Lactose Synthesis (11 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00538 Adenosine triphosphate Show HMDB01341 ADP Show HMDB00186 Alpha-Lactose Show HMDB00122 D-Glucose Show HMDB00645 Galactose 1-phosphate Show HMDB01586 Glucose 1-phosphate Show HMDB00295 Uridine 5'-diphosphate Show HMDB00288 Uridine 5'-monophosphate Show HMDB00286 Uridine diphosphate glucose Show HMDB00302 Uridine diphosphategalactose Show HMDB00285 Uridine triphosphate Show
Lysine Degradation (13 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01166 3-Hydroxybutyryl-CoA Show HMDB01484 Acetoacetyl-CoA Show HMDB01206 Acetyl-CoA Show HMDB01263 Allysine Show HMDB00510 Aminoadipic acid Show HMDB02009 Crotonoyl-CoA Show HMDB01084 D-1-Piperideine-2-carboxylic acid Show HMDB01339 Glutaryl-CoA Show HMDB00182 L-Lysine Show HMDB00716 L-Pipecolic acid Show HMDB00225 Oxoadipic acid Show HMDB06832 S-Glutaryldihydrolipoamide Show HMDB00279 Saccharopine Show
Malate-Aspartate Shuttle (8 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00191 L-Aspartic acid Show HMDB00148 L-Glutamic acid Show HMDB00744 Malic acid Show HMDB00902 NAD Show HMDB01487 NADH Show HMDB00223 Oxalacetic acid Show HMDB00208 Oxoglutaric acid Show HMDB01491 Pyridoxal 5'-phosphate Show
Methionine Metabolism (24 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00005 2-Ketobutyric acid Show HMDB01553 2-Oxo-4-methylthiobutanoic acid Show HMDB01173 5'-Methylthioadenosine Show HMDB01396 5-Methyltetrahydrofolic acid Show HMDB00963 5-Methylthioribose 1-phosphate Show HMDB00538 Adenosine triphosphate Show HMDB00043 Betaine Show HMDB01967 Carbon dioxide Show HMDB00097 Choline Show HMDB00092 Dimethylglycine Show HMDB00123 Glycine Show HMDB00742 Homocysteine Show HMDB00099 L-Cystathionine Show HMDB00574 L-Cysteine Show HMDB00719 L-Homoserine Show HMDB00696 L-Methionine Show HMDB00187 L-Serine Show HMDB02005 Methionine sulfoxide Show HMDB01414 Putrescine Show HMDB00939 S-Adenosylhomocysteine Show HMDB00988 S-Adenosylmethioninamine Show HMDB01185 S-Adenosylmethionine Show HMDB01257 Spermidine Show HMDB01846 Tetrahydrofolic acid Show
Mitochondrial Electron Transport Chain (15 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00538 Adenosine triphosphate Show HMDB01341 ADP Show HMDB01072 Coenzyme Q10 Show HMDB01112 D-Glyceraldehyde 3-phosphate Show HMDB01473 Dihydroxyacetone phosphate Show HMDB00134 Fumaric acid Show HMDB01270 Glyceric acid 1,3-biphosphate Show HMDB00126 Glycerol 3-phosphate Show HMDB01362 Hydrogen Show HMDB00902 NAD Show HMDB01487 NADH Show HMDB01377 Oxygen Show HMDB00254 Succinic acid Show HMDB01060 Ubiquinol 8 Show HMDB02111 Water Show
Nicotinate and Nicotinamide Metabolism (13 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00699 1-Methylnicotinamide Show HMDB04193 N1-Methyl-2-pyridone-5-carboxamide Show HMDB04194 N1-Methyl-4-pyridone-3-carboxamide Show HMDB00902 NAD Show HMDB00217 NADP Show HMDB01406 Niacinamide Show HMDB00855 Nicotinamide riboside Show HMDB00229 Nicotinamide ribotide Show HMDB06809 Nicotinate D-ribonucleoside Show HMDB01488 Nicotinic acid Show HMDB01179 Nicotinic acid adenine dinucleotide Show HMDB01132 Nicotinic acid mononucleotide Show HMDB00232 Quinolinic acid Show
Nucleotide Sugars Metabolism (9 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03345 Alpha-D-Glucose Show HMDB00143 D-Galactose Show HMDB00645 Galactose 1-phosphate Show HMDB01586 Glucose 1-phosphate Show HMDB01401 Glucose 6-phosphate Show HMDB01018 UDP-D-Xylose Show HMDB00286 Uridine diphosphate glucose Show HMDB00935 Uridine diphosphate glucuronic acid Show HMDB00302 Uridine diphosphategalactose Show
One Carbon Pool By Folate (8 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01354 5,10-Methenyltetrahydrofolic acid Show HMDB01533 5,10-Methylene-THF Show HMDB01396 5-Methyltetrahydrofolic acid Show HMDB01056 Dihydrofolic acid Show HMDB00121 Folic acid Show HMDB00972 N10-Formyl-THF Show HMDB01562 N5-Formyl-H4F Show HMDB01846 Tetrahydrofolic acid Show
Oxidation of Branched Chain Fatty Acids (14 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01295 2-Hydroxyphytanoyl-CoA Show HMDB06202 4,8 dimethylnonanoyl carnitine Show HMDB11604 4,8-Dimethylnonanoyl-CoA Show HMDB01206 Acetyl-CoA Show HMDB01423 Coenzyme A Show HMDB00201 L-Acetylcarnitine Show HMDB00062 L-Carnitine Show HMDB00801 Phytanic acid Show HMDB01359 Phytanoyl-CoA Show HMDB01958 Pristanal Show HMDB00795 Pristanic acid Show HMDB02057 Pristanoyl-CoA Show HMDB01275 Propionyl-CoA Show HMDB00824 Propionylcarnitine Show
Pantothenate and CoA Biosynthesis (10 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01117 4-Phosphopantothenoylcysteine Show HMDB01423 Coenzyme A Show HMDB01016 D-4'-Phosphopantothenate Show HMDB06834 D-Pantothenoyl-L-cysteine Show HMDB01373 Dephospho-CoA Show HMDB00574 L-Cysteine Show HMDB03426 Pantetheine Show HMDB01416 Pantetheine 4'-phosphate Show HMDB00210 Pantothenic acid Show HMDB04231 Pantothenol Show
Pentose Phosphate Pathway (18 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01316 6-Phosphogluconic acid Show HMDB03498 Beta-D-Glucose 6-phosphate Show HMDB01967 Carbon dioxide Show HMDB01321 D-Erythrose 4-phosphate Show HMDB01112 D-Glyceraldehyde 3-phosphate Show HMDB00283 D-Ribose Show HMDB01548 D-Ribose 5-phosphate Show HMDB00618 D-Ribulose 5-phosphate Show HMDB01068 D-Sedoheptulose 7-phosphate Show HMDB01351 Deoxyribose 1-phosphate Show HMDB01031 Deoxyribose 5-phosphate Show HMDB01058 Fructose 1,6-bisphosphate Show HMDB00124 Fructose 6-phosphate Show HMDB00150 Gluconolactone Show HMDB01401 Glucose 6-phosphate Show HMDB00280 Phosphoribosyl pyrophosphate Show HMDB01489 Ribose 1-phosphate Show HMDB00868 Xylulose 5-phosphate Show
Phenylacetate Metabolism (4 metabolites)
HMDB ID Name Pathway (highlighted) HMDB06344 Alpha-N-Phenylacetyl-L-glutamine Show HMDB01423 Coenzyme A Show HMDB00641 L-Glutamine Show HMDB06503 Phenylacetyl-CoA Show
Phenylalanine and Tyrosine Metabolism (13 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01268 4-Fumarylacetoacetic acid Show HMDB00707 4-Hydroxyphenylpyruvic acid Show HMDB00060 Acetoacetic acid Show HMDB00051 Ammonia Show HMDB00134 Fumaric acid Show HMDB00130 Homogentisic acid Show HMDB03125 Hydrogen peroxide Show HMDB00159 L-Phenylalanine Show HMDB00158 L-Tyrosine Show HMDB02052 Maleylacetoacetic acid Show HMDB01377 Oxygen Show HMDB00205 Phenylpyruvic acid Show HMDB02111 Water Show
Phospholipid Biosynthesis (19 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00895 Acetylcholine Show HMDB06968 CDP-DG(16:0/16:0) Show HMDB00097 Choline Show HMDB01413 Citicoline Show HMDB07098 DG(16:0/16:0/0:0) Show HMDB01473 Dihydroxyacetone phosphate Show HMDB00149 Ethanolamine Show HMDB00126 Glycerol 3-phosphate Show HMDB00114 Glycerylphosphorylethanolamine Show HMDB07853 LPA(16:0/0:0) Show HMDB10382 LysoPC(16:0) Show HMDB11503 LysoPE(16:0/0:0) Show HMDB00674 PA(16:0/16:0) Show HMDB01338 Palmityl-CoA Show HMDB00564 PC(16:0/16:0) Show HMDB08923 PE(16:0/16:0) Show HMDB10570 PG(16:0/16:0) Show HMDB09778 PI(16:0/16:0) Show HMDB00614 PS(16:0/16:0) Show
Porphyrin Metabolism (22 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01149 5-Aminolevulinic acid Show HMDB00054 Bilirubin Show HMDB03325 Bilirubin diglucuronide Show HMDB01008 Biliverdin Show HMDB00643 Coproporphyrin I Show HMDB00570 Coproporphyrin III Show HMDB02158 Coproporphyrinogen I Show HMDB01261 Coproporphyrinogen III Show HMDB04158 D-Urobilinogen Show HMDB00961 Farnesyl pyrophosphate Show HMDB00123 Glycine Show HMDB03178 Heme Show HMDB06901 Heme A Show HMDB01162 Heme O Show HMDB01137 Hydroxymethylbilane Show HMDB00245 Porphobilinogen Show HMDB00241 Protoporphyrin IX Show HMDB01097 Protoporphyrinogen IX Show HMDB00936 Uroporphyrin I Show HMDB00916 Uroporphyrin III Show HMDB02211 Uroporphyrinogen I Show HMDB01086 Uroporphyrinogen III Show
Propanoate Metabolism (18 metabolites)
HMDB ID Name Pathway (highlighted) HMDB02217 (S)-Methylmalonic acid semialdehyde Show HMDB06807 3-Hydroxypropionyl-CoA Show HMDB01484 Acetoacetyl-CoA Show HMDB01206 Acetyl-CoA Show HMDB02307 Acrylyl-CoA Show HMDB00056 Beta-Alanine Show HMDB00700 Hydroxypropionic acid Show HMDB00883 L-Valine Show HMDB11111 Malonic semialdehyde Show HMDB01175 Malonyl-CoA Show HMDB02170 Malonyl-CoA semialdehyde Show HMDB00202 Methylmalonic acid Show HMDB06806 Propinol adenylate Show HMDB00237 Propionic acid Show HMDB01275 Propionyl-CoA Show HMDB02255 R-Methylmalonyl-CoA Show HMDB02310 S-Methylmalonyl-CoA Show HMDB01022 Succinyl-CoA Show
Purine Metabolism (45 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01044 2'-Deoxyguanosine 5'-monophosphate Show HMDB06211 2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine Show HMDB01308 5'-Phosphoribosyl-N-formylglycinamide Show HMDB06273 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate Show HMDB01235 5-Aminoimidazole ribonucleotide Show HMDB01128 5-Phosphoribosylamine Show HMDB00034 Adenine Show HMDB00050 Adenosine Show HMDB01178 Adenosine diphosphate ribose Show HMDB00045 Adenosine monophosphate Show HMDB00538 Adenosine triphosphate Show HMDB00536 Adenylsuccinic acid Show HMDB01341 ADP Show HMDB01517 AICAR Show HMDB00058 Cyclic AMP Show HMDB01548 D-Ribose 5-phosphate Show HMDB01508 dADP Show HMDB01532 dATP Show HMDB00101 Deoxyadenosine Show HMDB00905 Deoxyadenosine monophosphate Show HMDB00085 Deoxyguanosine Show HMDB00071 Deoxyinosine Show HMDB00960 dGDP Show HMDB01440 dGTP Show HMDB01340 Diguanosine tetraphosphate Show HMDB02022 Glycineamideribotide Show HMDB00132 Guanine Show HMDB00133 Guanosine Show HMDB11629 Guanosine 2',3'-cyclic phosphate Show HMDB01201 Guanosine diphosphate Show HMDB01397 Guanosine monophosphate Show HMDB01273 Guanosine triphosphate Show HMDB00157 Hypoxanthine Show HMDB03335 IDP Show HMDB00195 Inosine Show HMDB00189 Inosine triphosphate Show HMDB00175 Inosinic acid Show HMDB00641 L-Glutamine Show HMDB01439 Phosphoribosyl formamidocarboxamide Show HMDB00280 Phosphoribosyl pyrophosphate Show HMDB00797 SAICAR Show HMDB00289 Uric acid Show HMDB00292 Xanthine Show HMDB00299 Xanthosine Show HMDB01554 Xanthylic acid Show
Pyrimidine Metabolism (36 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03911 3-Aminoisobutanoic acid Show HMDB01227 5-Thymidylic acid Show HMDB00056 Beta-Alanine Show HMDB01096 Carbamoylphosphate Show HMDB01546 CDP Show HMDB00089 Cytidine Show HMDB00095 Cytidine monophosphate Show HMDB00082 Cytidine triphosphate Show HMDB01245 dCDP Show HMDB01202 dCMP Show HMDB00998 dCTP Show HMDB00014 Deoxycytidine Show HMDB01351 Deoxyribose 1-phosphate Show HMDB00012 Deoxyuridine Show HMDB01191 Deoxyuridine triphosphate Show HMDB00079 Dihydrothymine Show HMDB00076 Dihydrouracil Show HMDB01274 dTDP Show HMDB01000 dUDP Show HMDB01409 dUMP Show HMDB03349 L-Dihydroorotic acid Show HMDB00641 L-Glutamine Show HMDB00226 Orotic acid Show HMDB00218 Orotidylic acid Show HMDB00280 Phosphoribosyl pyrophosphate Show HMDB00273 Thymidine Show HMDB01342 Thymidine 5'-triphosphate Show HMDB00262 Thymine Show HMDB00300 Uracil Show HMDB02031 Ureidoisobutyric acid Show HMDB00026 Ureidopropionic acid Show HMDB00828 Ureidosuccinic acid Show HMDB00296 Uridine Show HMDB00295 Uridine 5'-diphosphate Show HMDB00288 Uridine 5'-monophosphate Show HMDB00285 Uridine triphosphate Show
Pyruvate Metabolism (20 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03904 2-(a-Hydroxyethyl)thiamine diphosphate Show HMDB00990 Acetaldehyde Show HMDB00042 Acetic acid Show HMDB01484 Acetoacetyl-CoA Show HMDB06880 Acetyl adenylate Show HMDB01206 Acetyl-CoA Show HMDB01494 Acetylphosphate Show HMDB06458 D-Lactaldehyde Show HMDB01311 D-Lactic acid Show HMDB00190 L-Lactic acid Show HMDB00156 L-Malic acid Show HMDB03052 Lactaldehyde Show HMDB01175 Malonyl-CoA Show HMDB00223 Oxalacetic acid Show HMDB00263 Phosphoenolpyruvic acid Show HMDB01881 Propylene glycol Show HMDB01167 Pyruvaldehyde Show HMDB00243 Pyruvic acid Show HMDB06878 S-Acetyldihydrolipoamide-E Show HMDB01066 S-Lactoylglutathione Show
Retinol Metabolism (18 metabolites)
HMDB ID Name Pathway (highlighted) HMDB02152 11-cis-Retinaldehyde Show HMDB06216 11-cis-Retinol Show HMDB01862 2-Ethylacrylic acid Show HMDB06254 4-Hydroxyretinoic acid Show HMDB06285 4-oxo-Retinoic acid Show HMDB12329 4-Oxoretinol Show HMDB06218 9-cis-Retinal Show HMDB02369 9-cis-Retinoic acid Show HMDB06217 9-cis-Retinol Show HMDB11618 All-trans-13,14-dihydroretinol Show HMDB12452 all-trans-18-Hydroxyretinoic acid Show HMDB12451 all-trans-5,6-Epoxyretinoic acid Show HMDB03345 Alpha-D-Glucose Show HMDB00561 B-Carotene Show HMDB01358 Retinal Show HMDB03141 Retinoyl b-glucuronide Show HMDB03648 Retinyl palmitate Show HMDB00305 Vitamin A Show
Riboflavin Metabolism (9 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03826 6,7-Dimethyl-8-(1-D-ribityl)lumazine Show HMDB04256 7-Hydroxy-6-methyl-8-ribityl lumazine Show HMDB03701 Dimethylbenzimidazole Show HMDB01248 FAD Show HMDB01520 Flavin Mononucleotide Show HMDB03125 Hydrogen peroxide Show HMDB01377 Oxygen Show HMDB03364 Quinone Show HMDB00244 Riboflavin Show
Selenoamino Acid Metabolism (15 metabolites)
HMDB ID Name Pathway (highlighted) HMDB11104 3-Phosphoadenylylselenate Show HMDB04112 Adenylylselenate Show HMDB10716 Gamma-Glutamyl-Se-methylselenocysteine Show HMDB11110 Hydrogen selenide Show HMDB00161 L-Alanine Show HMDB11117 Se-Adenosylselenohomocysteine Show HMDB11118 Se-Adenosylselenomethionine Show HMDB04113 Se-Methylselenocysteine Show HMDB11119 Selenite Show HMDB06343 Selenocystathionine Show HMDB03288 Selenocysteine Show HMDB04122 Selenocystine Show HMDB04119 Selenohomocysteine Show HMDB03966 Selenomethionine Show HMDB06407 Selenophosphate Show
Spermidine and Spermine Biosynthesis (9 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01173 5'-Methylthioadenosine Show HMDB00538 Adenosine triphosphate Show HMDB00696 L-Methionine Show HMDB00214 Ornithine Show HMDB01414 Putrescine Show HMDB00988 S-Adenosylmethioninamine Show HMDB01185 S-Adenosylmethionine Show HMDB01257 Spermidine Show HMDB01256 Spermine Show
Sphingolipid Metabolism (15 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01480 3-Dehydrosphinganine Show HMDB00024 3-O-Sulfogalactosylceramide (d18:1/24:0) Show HMDB04950 Ceramide (d18:1/18:0) Show HMDB06752 Dihydroceramide Show HMDB10708 Galactosylceramide (d18:1/16:0) Show HMDB00140 Glucosylceramide Show HMDB00187 L-Serine Show HMDB04866 Lactosylceramide (d18:1/12:0) Show HMDB00224 O-Phosphoethanolamine Show HMDB01338 Palmityl-CoA Show HMDB01348 SM(d18:1/18:0) Show HMDB00269 Sphinganine Show HMDB01383 Sphinganine 1-phosphate Show HMDB00252 Sphingosine Show HMDB00277 Sphingosine 1-phosphate Show
Starch and Sucrose Metabolism (14 metabolites)
HMDB ID Name Pathway (highlighted) HMDB03345 Alpha-D-Glucose Show HMDB03514 Alpha-D-Glucose 1,6-bisphosphate Show HMDB03403 Amylose Show HMDB03971 Beta-D-Fructose 6-phosphate Show HMDB00660 D-Fructose Show HMDB00127 D-Glucuronic acid Show HMDB00163 D-Maltose Show HMDB06857 Dextrin Show HMDB01586 Glucose 1-phosphate Show HMDB01401 Glucose 6-phosphate Show HMDB00757 Glycogen Show HMDB00258 Sucrose Show HMDB00286 Uridine diphosphate glucose Show HMDB00935 Uridine diphosphate glucuronic acid Show
Steroid Biosynthesis (31 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01188 (S)-2,3-Epoxysqualene Show HMDB06839 24,25-Dihydrolanosterol Show HMDB01375 3-Hydroxy-3-methylglutaryl-CoA Show HMDB06838 3-Keto-4-methylzymosterol Show HMDB01286 4,4-Dimethyl-5a-cholesta-8,24-dien-3-b-ol Show HMDB06840 4,4-Dimethyl-5a-cholesta-8-en-3b-ol Show HMDB01023 4,4-Dimethylcholesta-8,14,24-trienol Show HMDB01217 4a-Methylzymosterol Show HMDB06927 4a-Methylzymosterol-4-carboxylic acid Show HMDB01090 5-Diphosphomevalonic acid Show HMDB06841 5a-Cholest-8-en-3b-ol Show HMDB06842 5a-Cholesta-7,24-dien-3b-ol Show HMDB00032 7-Dehydrocholesterol Show HMDB03896 7-Dehydrodesmosterol Show HMDB02027 8-Dehydrocholesterol Show HMDB01484 Acetoacetyl-CoA Show HMDB01206 Acetyl-CoA Show HMDB00067 Cholesterol Show HMDB02719 Desmosterol Show HMDB01120 Dimethylallylpyrophosphate Show HMDB00961 Farnesyl pyrophosphate Show HMDB01285 Geranyl-PP Show HMDB01347 Isopentenyl pyrophosphate Show HMDB01251 Lanosterin Show HMDB01170 Lathosterol Show HMDB00227 Mevalonic acid Show HMDB01343 Mevalonic acid-5P Show HMDB01278 Presqualene diphosphate Show HMDB00256 Squalene Show HMDB00876 Vitamin D3 Show HMDB06271 Zymosterol intermediate 2 Show
Steroidogenesis (32 metabolites)
HMDB ID Name Pathway (highlighted) HMDB04029 11-Dehydrocorticosterone Show HMDB12460 11b,17a,21-Trihydroxy-5b-pregnane-3,20-dione Show HMDB06760 11b,17a,21-Trihydroxypreg-nenolone Show HMDB06754 11b,21-Dihydroxy-3,20-oxo-5b-pregnan-18-al Show HMDB06757 11b,21-Dihydroxy-5b-pregnane-3,20-dione Show HMDB04031 11b-Hydroxyprogesterone Show HMDB00374 17-Hydroxyprogesterone Show HMDB06764 17a,20a-Dihydroxycholesterol Show HMDB06758 17a,21-Dihydroxy-5b-pregnane-3,11,20-trione Show HMDB06762 17a,21-Dihydroxypreg-nenolone Show HMDB00363 17a-Hydroxypregnenolone Show HMDB06763 20a,22b-Dihydroxycholesterol Show HMDB06283 20alpha-Hydroxycholesterol Show HMDB04030 21-Deoxycortisol Show HMDB04026 21-Hydroxypregnenolone Show HMDB04035 22b-Hydroxycholesterol Show HMDB06753 3a,11b,21-Trihydroxy-20-oxo-5b-pregnan-18-al Show HMDB06755 3a,21-Dihydroxy-5b-pregnane-11,20-dione Show HMDB06759 3a-Hydroxy-5b-pregnane-20-one Show HMDB01318 4-Methylpentanal Show HMDB03759 5a-Pregnane-3,20-dione Show HMDB00037 Aldosterone Show HMDB00067 Cholesterol Show HMDB00015 Cortexolone Show HMDB01547 Corticosterone Show HMDB00063 Cortisol Show HMDB02802 Cortisone Show HMDB00016 Deoxycorticosterone Show HMDB00253 Pregnenolone Show HMDB01830 Progesterone Show HMDB00949 Tetrahydrocortisol Show HMDB00903 Tetrahydrocortisone Show
Sulfate/Sulfite Metabolism (7 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00061 Adenosine 3',5'-diphosphate Show HMDB01003 Adenosine phosphosulfate Show HMDB00145 Estrone Show HMDB01425 Estrone sulfate Show HMDB01134 Phosphoadenosine phosphosulfate Show HMDB01448 Sulfate Show HMDB00240 Sulfite Show
Taurine and Hypotaurine Metabolism (7 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00996 3-Sulfinoalanine Show HMDB04195 5-L-Glutamyl-taurine Show HMDB02991 Cysteamine Show HMDB02757 Cysteic acid Show HMDB00965 Hypotaurine Show HMDB00574 L-Cysteine Show HMDB00251 Taurine Show
Thiamine Metabolism (4 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01512 Thiamin triphosphate Show HMDB00235 Thiamine Show HMDB02666 Thiamine monophosphate Show HMDB01372 Thiamine pyrophosphate Show
Transcription/Translation (28 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00045 Adenosine monophosphate Show HMDB00538 Adenosine triphosphate Show HMDB00095 Cytidine monophosphate Show HMDB00082 Cytidine triphosphate Show HMDB03406 D-Serine Show HMDB01397 Guanosine monophosphate Show HMDB01273 Guanosine triphosphate Show HMDB00161 L-Alanine Show HMDB00517 L-Arginine Show HMDB00168 L-Asparagine Show HMDB00191 L-Aspartic acid Show HMDB00574 L-Cysteine Show HMDB00148 L-Glutamic acid Show HMDB00641 L-Glutamine Show HMDB00177 L-Histidine Show HMDB00172 L-Isoleucine Show HMDB00687 L-Leucine Show HMDB00182 L-Lysine Show HMDB00696 L-Methionine Show HMDB00159 L-Phenylalanine Show HMDB00162 L-Proline Show HMDB00167 L-Threonine Show HMDB00929 L-Tryptophan Show HMDB00158 L-Tyrosine Show HMDB00883 L-Valine Show HMDB00250 Pyrophosphate Show HMDB00288 Uridine 5'-monophosphate Show HMDB00285 Uridine triphosphate Show
Tryptophan Metabolism (34 metabolites)
HMDB ID Name Pathway (highlighted) HMDB01330 2-Amino-3-carboxymuconic acid semialdehyde Show HMDB01123 2-Aminobenzoic acid Show HMDB01280 2-Aminomuconic acid semialdehyde Show HMDB01476 3-Hydroxyanthranilic acid Show HMDB04077 4,6-Dihydroxyquinoline Show HMDB04083 4-(2-Amino-3-hydroxyphenyl)-2,4-dioxobutanoic acid Show HMDB00978 4-(2-Aminophenyl)-2,4-dioxobutanoic acid Show HMDB00472 5-Hydroxy-L-tryptophan Show HMDB04086 5-Hydroxy-N-formylkynurenine Show HMDB04073 5-Hydroxyindoleacetaldehyde Show HMDB00763 5-Hydroxyindoleacetic acid Show HMDB04076 5-Hydroxykynurenamine Show HMDB12819 5-Hydroxykynurenine Show HMDB04096 5-Methoxyindoleacetate Show HMDB04081 6-Hydroxymelatonin Show HMDB04259 Acetyl-N-formyl-5-methoxykynurenamine Show HMDB04078 Cinnavalininate Show HMDB12948 Formyl-5-hydroxykynurenamine Show HMDB04089 Formylanthranilic acid Show HMDB01190 Indoleacetaldehyde Show HMDB00197 Indoleacetic acid Show HMDB00715 Kynurenic acid Show HMDB11631 L-3-Hydroxykynurenine Show HMDB00684 L-Kynurenine Show HMDB00929 L-Tryptophan Show HMDB01389 Melatonin Show HMDB01200 N'-Formylkynurenine Show HMDB01238 N-Acetylserotonin Show HMDB04369 N-Methylserotonin Show HMDB04370 N-Methyltryptamine Show HMDB00232 Quinolinic acid Show HMDB00259 Serotonin Show HMDB00303 Tryptamine Show HMDB00881 Xanthurenic acid Show
Tyrosine Metabolism (38 metabolites)
HMDB ID Name Pathway (highlighted) HMDB06915 2-Hydroxy-3-(4-hydroxyphenyl)propenoic acid Show HMDB01336 3,4-Dihydroxybenzeneacetic acid Show HMDB06242 3,4-Dihydroxymandelaldehyde Show HMDB01866 3,4-Dihydroxymandelic acid Show HMDB03791 3,4-Dihydroxyphenylacetaldehyde Show HMDB00318 3,4-Dihydroxyphenylglycol Show HMDB03474 3,5-Diiodo-L-tyrosine Show HMDB04061 3-Methoxy-4-hydroxyphenylglycolaldehyde Show HMDB00022 3-Methoxytyramine Show HMDB01268 4-Fumarylacetoacetic acid Show HMDB00707 4-Hydroxyphenylpyruvic acid Show HMDB04058 5,6-Dihydroxyindole Show HMDB01253 5,6-Dihydroxyindole-2-carboxylic acid Show HMDB00060 Acetoacetic acid Show HMDB00073 Dopamine Show HMDB01229 Dopaquinone Show HMDB00068 Epinephrine Show HMDB00134 Fumaric acid Show HMDB00130 Homogentisic acid Show HMDB00118 Homovanillic acid Show HMDB05175 Homovanillin Show HMDB06779 Indole-5,6-quinone Show HMDB00021 Iodotyrosine Show HMDB00181 L-Dopa Show HMDB01430 L-Dopachrome Show HMDB00158 L-Tyrosine Show HMDB04067 Leucodopachrome Show HMDB00265 Liothyronine Show HMDB02052 Maleylacetoacetic acid Show HMDB04068 Melanin Show HMDB04063 Metanephrine Show HMDB00216 Norepinephrine Show HMDB00819 Normetanephrine Show HMDB00020 p-Hydroxyphenylacetic acid Show HMDB00248 Thyroxine Show HMDB00306 Tyramine Show HMDB00291 Vanillylmandelic acid Show HMDB01490 Vanylglycol Show
Ubiquinone Biosynthesis (10 metabolites)
HMDB ID Name Pathway (highlighted) HMDB06820 2-Hexaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone Show HMDB06819 2-Hexaprenyl-3-methyl-6-methoxy-1,4 benzoquinone Show HMDB06818 2-Hexaprenyl-6-methoxy-1,4-benzoquinone Show HMDB06817 2-Hexaprenyl-6-methoxyphenol Show HMDB01063 3-Hexaprenyl-4,5-Dihydroxybenzoic acid Show HMDB00977 3-Hexaprenyl-4-hydroxy-5-methoxybenzoic acid Show HMDB06816 3-hexaprenyl-4-hydroxybenzoic acid Show HMDB00500 4-Hydroxybenzoic acid Show HMDB12188 All-trans-hexaprenyl diphosphate Show HMDB02012 Ubiquinone Q1 Show
Urea Cycle (20 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00045 Adenosine monophosphate Show HMDB00538 Adenosine triphosphate Show HMDB01341 ADP Show HMDB00051 Ammonia Show HMDB00052 Argininosuccinic acid Show HMDB01096 Carbamoylphosphate Show HMDB00904 Citrulline Show HMDB00134 Fumaric acid Show HMDB00595 Hydrogen carbonate Show HMDB00161 L-Alanine Show HMDB00517 L-Arginine Show HMDB00191 L-Aspartic acid Show HMDB00148 L-Glutamic acid Show HMDB00641 L-Glutamine Show HMDB00214 Ornithine Show HMDB00223 Oxalacetic acid Show HMDB00208 Oxoglutaric acid Show HMDB00243 Pyruvic acid Show HMDB00294 Urea Show HMDB02111 Water Show
Valine, Leucine and Isoleucine Degradation (36 metabolites)
HMDB ID Name Pathway (highlighted) HMDB00023 (S)-3-Hydroxyisobutyric acid Show HMDB01052 (S)-3-Hydroxyisobutyryl-CoA Show HMDB02166 (S)-b-aminoisobutyric acid Show HMDB02217 (S)-Methylmalonic acid semialdehyde Show HMDB06866 2-Methyl-1-hydroxypropyl-ThPP Show HMDB01356 2-Methyl-3-hydroxybutyryl-CoA Show HMDB01157 2-Methylacetoacetyl-CoA Show HMDB01041 2-Methylbutyryl-CoA Show HMDB01375 3-Hydroxy-3-methylglutaryl-CoA Show HMDB06870 3-Hydroxyisovaleryl-CoA Show HMDB06865 3-Methyl-1-hydroxybutyl-ThPP Show HMDB00491 3-Methyl-2-oxovaleric acid Show HMDB01493 3-Methylcrotonyl-CoA Show HMDB01057 3-Methylglutaconyl-CoA Show HMDB00060 Acetoacetic acid Show HMDB01484 Acetoacetyl-CoA Show HMDB01206 Acetyl-CoA Show HMDB00019 Alpha-ketoisovaleric acid Show HMDB00985 Dihydrolipoamide Show HMDB01243 Isobutyryl-CoA Show HMDB01113 Isovaleryl-CoA Show HMDB00695 Ketoleucine Show HMDB00172 L-Isoleucine Show HMDB00687 L-Leucine Show HMDB00883 L-Valine Show HMDB00962 Lipoamide Show HMDB01011 Methacrylyl-CoA Show HMDB00202 Methylmalonic acid Show HMDB01269 Methylmalonyl-CoA Show HMDB01275 Propionyl-CoA Show HMDB06869 S-(2-Methylbutanoyl)-dihydrolipoamide Show HMDB06868 S-(2-Methylpropionyl)-dihydrolipoamide-E Show HMDB06867 S-(3-Methylbutanoyl)-dihydrolipoamide-E Show HMDB01022 Succinyl-CoA Show HMDB01372 Thiamine pyrophosphate Show HMDB02054 Tiglyl-CoA Show
Vitamin B6 Metabolism (10 metabolites)
HMDB ID Name Pathway (highlighted) HMDB06954 2-Methyl-3-hydroxy-5-formylpyridine-4-carboxylate Show HMDB06955 3-Hydroxy-2-methylpyridine-4,5-dicarboxylate Show HMDB00017 4-Pyridoxic acid Show HMDB03344 Glycolaldehyde Show HMDB01545 Pyridoxal Show HMDB01491 Pyridoxal 5'-phosphate Show HMDB01431 Pyridoxamine Show HMDB01555 Pyridoxamine 5'-phosphate Show HMDB00239 Pyridoxine Show HMDB01319 Pyridoxine 5'-phosphate Show