Legend: enzyme field
| Version | 2.5 | ||||||||||||||||||
| Creation Date | 2005-11-16 15:48:42 | ||||||||||||||||||
| Update Date | 2009-05-08 12:05:36 | ||||||||||||||||||
| Accession Number | HMDB01432 | ||||||||||||||||||
| Secondary Accession Numbers | Not Available | ||||||||||||||||||
| Common Name | Agmatine | ||||||||||||||||||
| Description | Agmatine ((4-aminobutyl)guanidine, NH2-CH2-CH2-CH2-CH2-NH-C(-NH2)(=NH)) is the decarboxylation product of the amino acid arginine and is an intermediate in polyamine biosynthesis. It is a putative neurotransmitter. It is synthesized in the brain, stored in synaptic vesicles, accumulated by uptake, released by membrane depolarization, and inactivated by agmatinase. Agmatine binds to 2-adrenergic receptor and imidazoline binding sites, and blocks NMDA receptors and other cation ligand-gated channels. Agmatine inhibits nitric oxide synthase (NOS), and induces the release of some peptide hormones. Treatment with exogenous agmatine exerts neuroprotective effects in animal models of neurotrauma. -- Wikipedia | ||||||||||||||||||
| Synonyms |
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| Chemical IUPAC Name | 2-(4-aminobutyl)guanidine | ||||||||||||||||||
| Chemical Formula | C5H14N4 | ||||||||||||||||||
| Chemical Structure | |||||||||||||||||||
| Chemical Taxonomy |
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| Average Molecular Weight | 130.191 | ||||||||||||||||||
| Monoisotopic Molecular Weight | 130.121841 | ||||||||||||||||||
| Isomeric SMILES | NCCCCNC(N)=N | ||||||||||||||||||
| Canonical SMILES | NCCCCNC(N)=N | ||||||||||||||||||
| KEGG Compound ID | C00179 ![]() |
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| BioCyc ID | AGMATHINE ![]() |
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| BiGG ID | 34153 ![]() |
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| Wikipedia Link | Agmatine ![]() |
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| NuGOwiki Link | HMDB01432 ![]() |
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| Metagene Link | HMDB01432 ![]() |
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| METLIN ID | 3523 ![]() |
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| PubChem Compound | 199 ![]() |
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| PubChem Substance | 3885287 ![]() |
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| ChEBI ID | 17431 ![]() |
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| CAS Registry Number | 306-60-5 | ||||||||||||||||||
| InChI Identifier | InChI=1/C5H14N4/c6-3-1-2-4-9-5(7)8/h1-4,6H2,(H4,7,8,9) | ||||||||||||||||||
| Synthesis Reference | Not Available | ||||||||||||||||||
| Melting Point (Experimental) | Not Available | ||||||||||||||||||
| Experimental Water Solubility | Not Available Source: PhysProp | ||||||||||||||||||
| Predicted Water Solubility | 900.0 mg/mL at 25 oC [MEYLAN,WM et al. (1996)]; 3.61 mg/mL [Predicted by ALOGPS] Calculated using ALOGPS | ||||||||||||||||||
| Physiological Charge | 2 | ||||||||||||||||||
| State | Solid | ||||||||||||||||||
| Experimental LogP/Hydrophobicity | Not Available Source: PhysProp | ||||||||||||||||||
| Predicted LogP/Hydrophobicity | -1.01 [Predicted by ALOGPS]; -0.9 [Predicted by PubChem via XLOGP]; -1.16 [MEYLAN,WM & HOWARD,PH (1995)] Calculated using ALOGPS | ||||||||||||||||||
| Material Safety Data Sheet (MSDS) | |||||||||||||||||||
| MOL File | Show | ||||||||||||||||||
| SDF File | Show | ||||||||||||||||||
| PDB File | Show | ||||||||||||||||||
| 2D Structure | |||||||||||||||||||
| 3D Structure | |||||||||||||||||||
| Experimental PDB ID | Not Available | ||||||||||||||||||
| Experimental 1H NMR Spectrum | Download Spectrum Download FID (Bruker) Show Experimental Conditions ![]() |
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| Experimental 13C NMR Spectrum | Not Available | ||||||||||||||||||
| Experimental 13C HSQC Spectrum | Download Spectrum Download FID (Bruker) Show Experimental Conditions ![]() |
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| Predicted 1H NMR Spectrum |
Show Image Show Peaklist |
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| Predicted 13C NMR Spectrum |
Show Image Show Peaklist |
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| Mass Spectrum |
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| Simplified TOCSY Spectrum | Show Image Show Peaklist |
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| BMRB Spectrum | Show Image Show Peaklist |
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| Cellular Location |
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| Biofluid Location |
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| Tissue Location |
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| Concentrations (Normal) |
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| Concentrations (Abnormal) | Not Available | ||||||||||||||||||
| Associated Disorders | Not Available | ||||||||||||||||||
| OMIM ID | Not Available | ||||||||||||||||||
| Pathways | Not Available | ||||||||||||||||||
| General References |
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| Metabolic Enzymes |
| Enzyme 1 [top] | |||||||
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| Enzyme 1 ID | 7724 | ||||||
| Enzyme 1 Name | Arginine decarboxylase | ||||||
| Enzyme 1 Synonyms |
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| Enzyme 1 Gene Name | ADC | ||||||
| Enzyme 1 Protein Sequence |
>Arginine decarboxylase
MAGYLSESDFVMVEEGFSTRDLLKELTLGASQATTDEVAAFFVADLGAIVRKHFCFLKCL PRVRPFYAVKCNSSPGVLKVLAQLGLGFSCANKAEMELVQHIGIPASKIICANPCKQIAQ IKYAAKHGIQLLSFDNEMELAKVVKSHPSAKMVLCIATDDSHSLSCLSLKFGVSLKSCRH LLENAKKHHVEVVGVSFHIGSGCPDPQAYAQSIADARLVFEMGTELGHKMHVLDLGGGFP GTEGAKVRFEEIASVINSALDLYFPEGCGVDIFAELGRYYVTSAFTVAVSIIAKKEVLLD QPGREEENGSTSKTIVYHLDEGVYGIFNSVLFDNICPTPILQKKPSTEQPLYSSSLWGPA VDGCDCVAEGLWLPQLHVGDWLVFDNMGAYTVGMGSPFWGTQACHITYAMSRVAWEALRR QLMAAEQEDDVEGVCKPLSCGWEITDTLCVGPVFTPASIM |
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| Enzyme 1 Number of Residues | 460 | ||||||
| Enzyme 1 Molecular Weight | 49980 | ||||||
| Enzyme 1 Theoretical pI | 5.41 | ||||||
| Enzyme 1 GO Classification |
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| Enzyme 1 General Function | Amino acid transport and metabolism | ||||||
| Enzyme 1 Specific Function | Decarboxylates L-arginine to agmatine. Truncated splice isoforms probably lack activity | ||||||
| Enzyme 1 Pathways | |||||||
| Enzyme 1 Reactions |
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| Enzyme 1 Pfam Domain Function | |||||||
| Enzyme 1 Signals |
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| Enzyme 1 Transmembrane Regions |
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| Enzyme 1 Essentiality | Not Available | ||||||
| Enzyme 1 GenBank ID Protein | 15858863 ![]() |
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| Enzyme 1 UniProtKB/Swiss-Prot ID | Q96A70 ![]() |
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| Enzyme 1 UniProtKB/Swiss-Prot Entry Name | ADC_HUMAN ![]() |
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| Enzyme 1 PDB ID | Not Available | ||||||
| Enzyme 1 Cellular Location | Not Available | ||||||
| Enzyme 1 Gene Sequence |
>1383 bp
ATGGCTGGCTACCTGAGTGAATCGGACTTTGTGATGGTGGAGGAGGGCTTCAGTACCCGA GACCTGCTGAAGGAACTCACTCTGGGGGCCTCACAGGCCACCACGGACGAGGTAGCTGCC TTCTTCGTGGCTGACCTGGGTGCCATAGTGAGGAAGCACTTTTGCTTTCTGAAGTGCCTG CCACGAGTCCGGCCCTTTTATGCTGTCAAGTGCAACAGCAGCCCAGGTGTGCTGAAGGTT CTGGCCCAGCTGGGGCTGGGCTTTAGCTGTGCCAACAAGGCAGAGATGGAGTTGGTCCAG CATATTGGAATCCCTGCCAGTAAGATCATCTGCGCCAACCCCTGTAAGCAAATTGCACAG ATCAAATATGCTGCCAAGCATGGGATCCAGCTGCTGAGCTTTGACAATGAGATGGAGCTG GCAAAGGTGGTAAAGAGCCACCCCAGTGCCAAGATGGTTCTGTGCATTGCTACCGATGAC TCCCACTCCCTGAGCTGCCTGAGCCTAAAGTTTGGAGTGTCACTGAAATCCTGCAGACAC CTGCTTGAAAATGCGAAGAAGCACCATGTGGAGGTGGTGGGTGTGAGTTTTCACATTGGC AGTGGCTGTCCTGACCCTCAGGCCTATGCTCAGTCCATCGCAGACGCCCGGCTCGTGTTT GAAATGGGCACCGAGCTGGGTCACAAGATGCACGTTCTGGACCTTGGTGGTGGCTTCCCT GGCACAGAAGGGGCCAAAGTGAGATTTGAAGAGATTGCTTCCGTGATCAACTCAGCCTTG GACCTGTACTTCCCAGAGGGCTGTGGCGTGGACATCTTTGCTGAGCTGGGGCGCTACTAC GTGACCTCGGCCTTCACTGTGGCAGTCAGCATCATTGCCAAGAAGGAGGTTCTGCTAGAC CAGCCTGGCAGGGAGGAGGAAAATGGTTCCACCTCCAAGACCATCGTGTACCACCTTGAT GAGGGCGTGTATGGGATCTTCAACTCAGTCCTGTTTGACAACATCTGCCCTACCCCCATC CTGCAGAAGAAACCATCCACGGAGCAGCCCCTGTACAGCAGCAGCCTGTGGGGCCCGGCG GTTGATGGCTGTGATTGCGTGGCTGAGGGCCTGTGGCTGCCGCAACTACACGTAGGGGAC TGGCTGGTCTTTGACAACATGGGCGCCTACACTGTGGGCATGGGTTCCCCCTTTTGGGGG ACCCAGGCCTGCCACATCACCTATGCCATGTCCCGGGTGGCCTGGGAAGCGCTGCGAAGG CAGCTGATGGCTGCAGAACAGGAGGATGACGTGGAGGGTGTGTGCAAGCCTCTGTCCTGC GGCTGGGAGATCACAGACACCCTGTGCGTGGGCCCTGTCTTCACCCCAGCGAGCATCATG TGA |
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| Enzyme 1 GenBank Gene ID | AY050634 ![]() |
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| Enzyme 1 GeneCard ID | ADC ![]() |
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| Enzyme 1 GenAtlas ID | ADC ![]() |
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| Enzyme 1 HGNC ID | HGNC:29957 ![]() |
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| Enzyme 1 Chromosome Location | 1 | ||||||
| Enzyme 1 Locus | - | ||||||
| Enzyme 1 SNPs | SNPJam Report ![]() |
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| Enzyme 1 General References |
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| Enzyme 1 Metabolite References | Not Available | ||||||
| Enzyme 2 [top] | |||||||
| Enzyme 2 ID | 8199 | ||||||
| Enzyme 2 Name | Agmatinase, mitochondrial precursor | ||||||
| Enzyme 2 Synonyms |
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| Enzyme 2 Gene Name | AGMAT | ||||||
| Enzyme 2 Protein Sequence |
>Agmatinase, mitochondrial precursor
MLRLLASGCARGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMM RLPVQTSPEGLDAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLM VADLGDVNVNLYNLQDSCRRIQEAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVG LLHVDAHTDTTDKALGEKLYHGAPFRRCVDEGLLDCKRVVQIGIRGSSTTLDPYRYNRSQ GFRVVLAEDCWMKSLVPLMGEVRQQMGGKPIYISFDIDALDPAYAPGTGTPEIAGLTPSQ ALEIIRGCQGLNVMGCDLVEVSPPYDLSGNTALLAANLLFEMLCALPKVTTV |
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| Enzyme 2 Number of Residues | 352 | ||||||
| Enzyme 2 Molecular Weight | 37661 | ||||||
| Enzyme 2 Theoretical pI | 7.66 | ||||||
| Enzyme 2 GO Classification |
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| Enzyme 2 General Function | Amino acid transport and metabolism | ||||||
| Enzyme 2 Specific Function | Agmatine + H(2)O = putrescine + urea | ||||||
| Enzyme 2 Pathways |
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| Enzyme 2 Reactions |
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| Enzyme 2 Pfam Domain Function |
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| Enzyme 2 Signals |
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| Enzyme 2 Transmembrane Regions |
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| Enzyme 2 Essentiality | Not Available | ||||||
| Enzyme 2 GenBank ID Protein | 18031951 ![]() |
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| Enzyme 2 UniProtKB/Swiss-Prot ID | Q9BSE5 ![]() |
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| Enzyme 2 UniProtKB/Swiss-Prot Entry Name | SPEB_HUMAN ![]() |
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| Enzyme 2 PDB ID | Not Available | ||||||
| Enzyme 2 Cellular Location | Not Available | ||||||
| Enzyme 2 Gene Sequence |
>1059 bp
ATGCTGAGGCTGCTGGCGTCCGGGTGCGCCCGGGGCCCGGGGCCCGGCGTGGGCGCGCGT CCTGCCGCAGGGCTCTTTCATCCGGGGCGCCGCCAGAGCCGCCAGGCTTCCGACGCGCCC CGGAACCAGCCCCCCAGCCCCGAGTTCGTGGCCCGGCCGGTGGGCGTCTGCTCCATGATG CGCCTGCCGGTGCAGACCTCCCCCGAGGGGCTGGACGCTGCCTTCATCGGGGTGCCCCTG GATACTGGGACCTCCAACCGGCCTGGGGCGAGATTCGGACCTCGCCGCATCCGGGAAGAA TCAGTGATGCTTCGGACAGTCAATCCTAGCACGGGGGCCCTCCCCTTCCAGTCCCTCATG GTTGCAGACCTAGGCGATGTGAATGTCAATCTTTACAACCTTCAGGACAGCTGCCGGCAA ATTCAAGAGGCCTATGAGAAAATTGTAGCAGCTGGCTGTATTCCTCTGACCTTGGGTGGA GATCACACAATCACATATCCCATATTGCAAGCGATGGCAAAAAAGCATGGCCCAGTGGGG CTGCTGCACGTGGATGCGCACACGGACACGACCGACAAGGCCCTAGGAGAGAAGCTCTAC CACGGGGCGCCCTTCCGCCGGTGTGTGGATGAGGGTCTCCTGGACTGTAAGCGTGTGGTG CAGATTGGCATCCGGGGCTCTTCCACGACCTTGGATCCCTACAGATACAACCGGAGCCAG GGCTTCCGGGTAGTCCTGGCTGAAGACTGCTGGATGAAGTCGCTGGTTCCTCTGATGGGG GAAGTCAGGCAGCAGATGGGAGGCAAACCCATTTATATCAGCTTTGATATTGACGCTCTG GATCCTGCCTATGCGCCAGGGACAGGGACACCTGAAATTGCTGGTCTCACTCCTAGTCAG GCTCTGGAGATCATCAGGGGTTGTCAAGGCCTGAACGTGATGGGCTGTGATCTTGTCGAA GTTTCACCACCGTATGATCTTTCTGGGAACACAGCCCTGCTGGCGGCTAACCTGCTGTTT GAGATGCTATGTGCTCTCCCCAAAGTGACAACCGTCTGA |
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| Enzyme 2 GenBank Gene ID | AY057097 ![]() |
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| Enzyme 2 GeneCard ID | AGMAT ![]() |
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| Enzyme 2 GenAtlas ID | AGMAT ![]() |
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| Enzyme 2 HGNC ID | HGNC:18407 ![]() |
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| Enzyme 2 Chromosome Location | 1 | ||||||
| Enzyme 2 Locus | 1p36.21 | ||||||
| Enzyme 2 SNPs | SNPJam Report ![]() |
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| Enzyme 2 General References |
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| Enzyme 2 Metabolite References | Not Available | ||||||
| Enzyme 3 [top] | |||||||
| Enzyme 3 ID | 13123 | ||||||
| Enzyme 3 Name | cDNA, FLJ96771, Homo sapiens ornithine decarboxylase-like protein (ODC-p), mRNA (Arginine decarboxylase, isoform CRA_d) | ||||||
| Enzyme 3 Synonyms | Not Available | ||||||
| Enzyme 3 Gene Name | ADC | ||||||
| Enzyme 3 Protein Sequence |
>cDNA, FLJ96771, Homo sapiens ornithine decarboxylase-like protein (ODC-p)
MAGYLSESDFVMVEEGFSTRDLLKELTLGASQATTDEVAAFFVADLGAIVRKHFCFLKCL PRVRPFYAVKCNSSPGVLKVLAQLGLGFSCANKAEMELVQHIGIPASKIICANPCKQIAQ IKYAAKHGIQLLSFDNEMELAKVVKSHPSAKMVLCIATDDSHSLSCLSLKFGVSLKSCRH LLENAKKHHVEVVGVSFHIGSGCPDPQAYAQSIADARLVFEMGTELGHKMHVLDLGGGFP GTEGAKVRFEEIASVINSALDLYFPEGCGVDIFAELGRYYVTSAFTVAVSIIAKKEVLLD QPGREEENGSTSKTIVYHLDEGVYGIFNSVLFDNICPTPILQKKPSTEQPLYSSSLWGPA VDGCDCVAEGLWLPQLHVGDWLVFDNMGAYTVGMGSPFWGTQACHITYAMSRVAWEALRR QLMAAEQEDDVEGVCKPLSCGWEITDTLCVGPVFTPASIM |
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| Enzyme 3 Number of Residues | 460 | ||||||
| Enzyme 3 Molecular Weight | 49980 | ||||||
| Enzyme 3 Theoretical pI | Not Available | ||||||
| Enzyme 3 GO Classification | Not Available | ||||||
| Enzyme 3 General Function | Not Available | ||||||
| Enzyme 3 Specific Function | Not Available | ||||||
| Enzyme 3 Pathways | Not Available | ||||||
| Enzyme 3 Reactions | Not Available | ||||||
| Enzyme 3 Pfam Domain Function | Not Available | ||||||
| Enzyme 3 Signals |
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| Enzyme 3 Transmembrane Regions |
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| Enzyme 3 Essentiality | Not Available | ||||||
| Enzyme 3 GenBank ID Protein | Not Available | ||||||
| Enzyme 3 UniProtKB/Swiss-Prot ID | B2RDU5 ![]() |
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| Enzyme 3 UniProtKB/Swiss-Prot Entry Name | B2RDU5_HUMAN ![]() |
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| Enzyme 3 PDB ID | Not Available | ||||||
| Enzyme 3 Cellular Location | Not Available | ||||||
| Enzyme 3 Gene Sequence | Not Available | ||||||
| Enzyme 3 GenBank Gene ID | Not Available | ||||||
| Enzyme 3 GeneCard ID | B2RDU5 ![]() |
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| Enzyme 3 GenAtlas ID | Not Available | ||||||
| Enzyme 3 HGNC ID | Not Available | ||||||
| Enzyme 3 Chromosome Location | Not Available | ||||||
| Enzyme 3 Locus | Not Available | ||||||
| Enzyme 3 SNPs | SNPJam Report ![]() |
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| Enzyme 3 General References | Not Available | ||||||
| Enzyme 3 Metabolite References | Not Available | ||||||
| Enzyme 4 [top] | |||||||
| Enzyme 4 ID | 17231 | ||||||
| Enzyme 4 Name | Solute carrier family 22 member 15 | ||||||
| Enzyme 4 Synonyms |
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| Enzyme 4 Gene Name | SLC22A15 | ||||||
| Enzyme 4 Protein Sequence |
>Solute carrier family 22 member 15
MEVEEAFQAVGEMGIYQMYLCFLLAVLLQLYVATEAILIALVGATPSYHWDLAELLPNQS HGNQSAGEDQAFGDWLLTANGSEIHKHVHFSSSFTSIASEWFLIANRSYKVSAASSFFFS GVFVGVISFGQLSDRFGRKKVYLTGFALDILFAIANGFSPSYEFFAVTRFLVGMMNGGMS LVAFVLLNECVGTAYWALAGSIGGLFFAVGIAQYALLGYFIRSWRTLAILVNLQGTVVFL LSLFIPESPRWLYSQGRLSEAEEALYLIAKRNRKLKCTFSLTHPANRSCRETGSFLDLFR YRVLLGHTLILMFIWFVCSLVYYGLTLSAGDLGGSIYANLALSGLIEIPSYPLCIYLINQ KWFGRKRTLSAFLCLGGLACLIVMFLPEKKDTGVFAVVNSHSLSLLGKLTISAAFNIVYI YTSELYPTVIRNVGLGTCSMFSRVGGIIAPFIPSLKYVQWSLPFIVFGATGLTSGLLSLL LPETLNSPLLETFSDLQVYSYRRLGEEALSLQALDPQQCVDKESSLGSESEEEEEFYDAD EETQMIK |
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| Enzyme 4 Number of Residues | 547 | ||||||
| Enzyme 4 Molecular Weight | 60541 | ||||||
| Enzyme 4 Theoretical pI | 5.29 | ||||||
| Enzyme 4 GO Classification |
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| Enzyme 4 General Function | Carbohydrate transport and metabolism | ||||||
| Enzyme 4 Specific Function | Probably transports organic cations. Appears not to be the agmatine transporter | ||||||
| Enzyme 4 Pathways | Not Available | ||||||
| Enzyme 4 Reactions | Not Available | ||||||
| Enzyme 4 Pfam Domain Function |
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| Enzyme 4 Signals |
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| Enzyme 4 Transmembrane Regions |
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| Enzyme 4 Essentiality | Not Available | ||||||
| Enzyme 4 GenBank ID Protein | Not Available | ||||||
| Enzyme 4 UniProtKB/Swiss-Prot ID | Q8IZD6 ![]() |
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| Enzyme 4 UniProtKB/Swiss-Prot Entry Name | S22AF_HUMAN ![]() |
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| Enzyme 4 PDB ID | Not Available | ||||||
| Enzyme 4 Cellular Location | Not Available | ||||||
| Enzyme 4 Gene Sequence | Not Available | ||||||
| Enzyme 4 GenBank Gene ID | AY145501 ![]() |
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| Enzyme 4 GeneCard ID | Q8IZD6 ![]() |
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| Enzyme 4 GenAtlas ID | SLC22A15 ![]() |
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| Enzyme 4 HGNC ID | HGNC:20301 ![]() |
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| Enzyme 4 Chromosome Location | Not Available | ||||||
| Enzyme 4 Locus | Not Available | ||||||
| Enzyme 4 SNPs | SNPJam Report ![]() |
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| Enzyme 4 General References |
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| Enzyme 4 Metabolite References | Not Available | ||||||