Record Information |
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Version | 5.0 |
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Status | Detected and Quantified |
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Creation Date | 2006-02-21 08:21:58 UTC |
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Update Date | 2023-02-21 17:15:50 UTC |
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HMDB ID | HMDB0001856 |
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Secondary Accession Numbers | |
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Metabolite Identification |
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Common Name | Protocatechuic acid |
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Description | Protocatechuic acid, also known as protocatechuate or 3,4-dihydroxybenzoate, belongs to the class of organic compounds known as hydroxybenzoic acid derivatives. Hydroxybenzoic acid derivatives are compounds containing a hydroxybenzoic acid (or a derivative), which is a benzene ring bearing a carboxyl and a hydroxyl groups. The enzyme protocatechuate 3,4-dioxygenase uses 3,4-dihydroxybenzoate and O2 to produce 3-carboxy-cis,cis-muconate. Protocatechuic acid is a drug. In the analogous hardening of the cockroach ootheca, the phenolic substance concerned is protocatechuic acid. Protocatechuic acid is a mild, balsamic, and phenolic tasting compound. Outside of the human body, protocatechuic acid is found, on average, in the highest concentration in a few different foods, such as garden onions, cocoa powders, and star anises and in a lower concentration in lentils, liquors, and red raspberries. Protocatechuic acid has also been detected, but not quantified in several different foods, such as cloud ear fungus, american pokeweeds, common mushrooms, fruits, and feijoa. This could make protocatechuic acid a potential biomarker for the consumption of these foods. It is also found in Allium cepa (17,540 ppm). It is a major metabolite of antioxidant polyphenols found in green tea. Similarly, PCA was reported to increase proliferation and inhibit apoptosis of neural stem cells. In vitro testing documented antioxidant and anti-inflammatory activity of PCA, while liver protection in vivo was measured by chemical markers and histological assessment. |
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Structure | InChI=1S/C7H6O4/c8-5-2-1-4(7(10)11)3-6(5)9/h1-3,8-9H,(H,10,11) |
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Synonyms | Value | Source |
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4,5-Dihydroxybenzoic acid | ChEBI | 4-Carboxy-1,2-dihydroxybenzene | ChEBI | Protocatehuic acid | ChEBI | 3,4-Dihydroxybenzoic acid | Kegg | Protocatechuate | Kegg | 4,5-Dihydroxybenzoate | Generator | Protocatehuate | Generator | 3,4-Dihydroxybenzoate | Generator | Protocatechuic acid, monosodium salt | HMDB | Protocatechuic acid, carboxy-14C-labeled | HMDB | 2,4-Dihydroxybenzoate | HMDB | 2,4-Dihydroxybenzoic acid | HMDB | b-Resorcylate | HMDB | b-Resorcylic acid | HMDB | beta-Resorcylate | HMDB | beta-Resorcylic acid | HMDB | 3,4-DHBA | HMDB | 1,2-Dihydroxybenzene-4-carboxylic acid | PhytoBank | Protocatechoic acid | PhytoBank | Proto-catechuic acid | PhytoBank | Protocatechuic acid | HMDB |
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Chemical Formula | C7H6O4 |
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Average Molecular Weight | 154.121 |
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Monoisotopic Molecular Weight | 154.026608673 |
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IUPAC Name | 3,4-dihydroxybenzoic acid |
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Traditional Name | 3,4-dihydroxybenzoic acid |
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CAS Registry Number | 99-50-3 |
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SMILES | OC(=O)C1=CC(O)=C(O)C=C1 |
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InChI Identifier | InChI=1S/C7H6O4/c8-5-2-1-4(7(10)11)3-6(5)9/h1-3,8-9H,(H,10,11) |
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InChI Key | YQUVCSBJEUQKSH-UHFFFAOYSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as hydroxybenzoic acid derivatives. Hydroxybenzoic acid derivatives are compounds containing a hydroxybenzoic acid (or a derivative), which is a benzene ring bearing a carboxyl and a hydroxyl groups. |
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Kingdom | Organic compounds |
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Super Class | Benzenoids |
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Class | Benzene and substituted derivatives |
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Sub Class | Benzoic acids and derivatives |
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Direct Parent | Hydroxybenzoic acid derivatives |
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Alternative Parents | |
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Substituents | - Dihydroxybenzoic acid
- Hydroxybenzoic acid
- Benzoic acid
- Benzoyl
- Catechol
- 1-hydroxy-4-unsubstituted benzenoid
- 1-hydroxy-2-unsubstituted benzenoid
- Phenol
- Carboxylic acid derivative
- Carboxylic acid
- Monocarboxylic acid or derivatives
- Organic oxygen compound
- Hydrocarbon derivative
- Organooxygen compound
- Organic oxide
- Aromatic homomonocyclic compound
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Molecular Framework | Aromatic homomonocyclic compounds |
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External Descriptors | |
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Ontology |
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Physiological effect | |
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Disposition | |
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Process | Not Available |
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Role | |
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Physical Properties |
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State | Solid |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | 221 °C | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | 18.2 mg/mL at 14 °C | YALKOWSKY,SH & DANNENFELSER,RM (1992) | LogP | 0.86 | HANSCH,C ET AL. (1995) |
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Experimental Chromatographic Properties | Experimental Collision Cross Sections |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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Protocatechuic acid,1TMS,isomer #1 | C[Si](C)(C)OC(=O)C1=CC=C(O)C(O)=C1 | 1814.1 | Semi standard non polar | 33892256 | Protocatechuic acid,1TMS,isomer #2 | C[Si](C)(C)OC1=CC(C(=O)O)=CC=C1O | 1749.4 | Semi standard non polar | 33892256 | Protocatechuic acid,1TMS,isomer #3 | C[Si](C)(C)OC1=CC=C(C(=O)O)C=C1O | 1791.0 | Semi standard non polar | 33892256 | Protocatechuic acid,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C1=CC=C(O[Si](C)(C)C)C(O)=C1 | 1771.4 | Semi standard non polar | 33892256 | Protocatechuic acid,2TMS,isomer #2 | C[Si](C)(C)OC(=O)C1=CC=C(O)C(O[Si](C)(C)C)=C1 | 1747.8 | Semi standard non polar | 33892256 | Protocatechuic acid,2TMS,isomer #3 | C[Si](C)(C)OC1=CC=C(C(=O)O)C=C1O[Si](C)(C)C | 1778.8 | Semi standard non polar | 33892256 | Protocatechuic acid,3TMS,isomer #1 | C[Si](C)(C)OC(=O)C1=CC=C(O[Si](C)(C)C)C(O[Si](C)(C)C)=C1 | 1809.4 | Semi standard non polar | 33892256 | Protocatechuic acid,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C1=CC=C(O)C(O)=C1 | 2065.6 | Semi standard non polar | 33892256 | Protocatechuic acid,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC1=CC(C(=O)O)=CC=C1O | 2005.0 | Semi standard non polar | 33892256 | Protocatechuic acid,1TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC1=CC=C(C(=O)O)C=C1O | 2054.4 | Semi standard non polar | 33892256 | Protocatechuic acid,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C1=CC=C(O[Si](C)(C)C(C)(C)C)C(O)=C1 | 2288.9 | Semi standard non polar | 33892256 | Protocatechuic acid,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)C1=CC=C(O)C(O[Si](C)(C)C(C)(C)C)=C1 | 2234.8 | Semi standard non polar | 33892256 | Protocatechuic acid,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC1=CC=C(C(=O)O)C=C1O[Si](C)(C)C(C)(C)C | 2280.4 | Semi standard non polar | 33892256 | Protocatechuic acid,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C1=CC=C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C1 | 2482.8 | Semi standard non polar | 33892256 |
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| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Experimental GC-MS | GC-MS Spectrum - Protocatechuic acid GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies) (3 TMS) | splash10-0006-0913000000-0933eeed3701393aa41f | 2014-06-16 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Protocatechuic acid GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies) (Non-derivatized) | splash10-0006-0911000000-ca1452bfe34749c0d8c1 | 2014-06-16 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Protocatechuic acid GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies) (3 TMS) | splash10-00dl-9711000000-595a58baf84bb73670ae | 2014-06-16 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Protocatechuic acid GC-MS (3 TMS) | splash10-0006-4912000000-a095cbdb4d3809a9b775 | 2014-06-16 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Protocatechuic acid EI-B (Non-derivatized) | splash10-0gb9-9800000000-f08a8e55f19d388091c0 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Protocatechuic acid GC-EI-TOF (Non-derivatized) | splash10-0006-0913000000-0933eeed3701393aa41f | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Protocatechuic acid GC-EI-TOF (Non-derivatized) | splash10-0006-0911000000-ca1452bfe34749c0d8c1 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Protocatechuic acid GC-EI-TOF (Non-derivatized) | splash10-00dl-9711000000-595a58baf84bb73670ae | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Protocatechuic acid GC-MS (Non-derivatized) | splash10-0006-4912000000-a095cbdb4d3809a9b775 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Protocatechuic acid GC-EI-TOF (Non-derivatized) | splash10-0006-0911000000-c141d09a094e57440cd4 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Protocatechuic acid GC-MS (Non-derivatized) - 70eV, Positive | splash10-114r-2900000000-ad8c99ac8e347f2d0a02 | 2016-09-22 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Protocatechuic acid GC-MS (3 TMS) - 70eV, Positive | splash10-05aj-4092000000-dfefa4fd6fad51de9dbc | 2017-10-06 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Protocatechuic acid GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Protocatechuic acid GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid Quattro_QQQ 10V, Positive-QTOF (Annotated) | splash10-03di-0900000000-9e8a76eec66c42952ee9 | 2012-07-24 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid Quattro_QQQ 25V, Positive-QTOF (Annotated) | splash10-0296-9100000000-145f71b183841a31fdc8 | 2012-07-24 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid Quattro_QQQ 40V, Positive-QTOF (Annotated) | splash10-014i-9000000000-9044e5839d8d0b8f8ee6 | 2012-07-24 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid EI-B (HITACHI M-52) , Positive-QTOF | splash10-0gb9-9800000000-f08a8e55f19d388091c0 | 2012-08-31 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid LC-ESI-QTOF (UPLC Q-Tof Premier, Waters) , Negative-QTOF | splash10-0a4i-0900000000-58c9b8232fbc187217d4 | 2012-08-31 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid LC-ESI-QTOF , negative-QTOF | splash10-0a4i-0900000000-58c9b8232fbc187217d4 | 2017-09-14 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid , negative-QTOF | splash10-0a4i-0900000000-43a650326b83e2dfe589 | 2017-09-14 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid , positive-QTOF | splash10-0a4i-0900000000-61ebd9558aeeb60dda89 | 2017-09-14 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid 40V, Negative-QTOF | splash10-0a4i-6900000000-dbc2159e590d48566b2c | 2021-09-20 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid 35V, Negative-QTOF | splash10-0a4i-0900000000-e6774ca1e916f97ad70d | 2021-09-20 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid 35V, Negative-QTOF | splash10-0a4i-0900000000-0bc46bd9df728e43dc63 | 2021-09-20 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid 20V, Negative-QTOF | splash10-0a4i-1900000000-0d999db8c8012fe5222c | 2021-09-20 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Protocatechuic acid 10V, Negative-QTOF | splash10-0a4i-0900000000-7ecb0cf92a0c6bd88150 | 2021-09-20 | HMDB team, MONA | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 10V, Positive-QTOF | splash10-0a4r-0900000000-99ac3661fc7809f28796 | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 20V, Positive-QTOF | splash10-0a4r-0900000000-df55ffdd340947acfac9 | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 40V, Positive-QTOF | splash10-0pc9-9500000000-201668ae66ab0379946f | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 10V, Positive-QTOF | splash10-0a4r-0900000000-99ac3661fc7809f28796 | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 20V, Positive-QTOF | splash10-0a4r-0900000000-df55ffdd340947acfac9 | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 40V, Positive-QTOF | splash10-0pc9-9500000000-201668ae66ab0379946f | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 10V, Negative-QTOF | splash10-0udi-0900000000-0595d63853a488b9c6cf | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 20V, Negative-QTOF | splash10-0pb9-0900000000-d794b62eb087aaa84f94 | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 40V, Negative-QTOF | splash10-0a4i-9700000000-32a6fa42639cb300cdc9 | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 10V, Negative-QTOF | splash10-0udi-0900000000-0595d63853a488b9c6cf | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 20V, Negative-QTOF | splash10-0pb9-0900000000-d794b62eb087aaa84f94 | 2015-05-27 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Protocatechuic acid 40V, Negative-QTOF | splash10-0a4i-9700000000-32a6fa42639cb300cdc9 | 2015-05-27 | Wishart Lab | View Spectrum |
NMR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Experimental 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, experimental) | 2012-12-04 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | Experimental 2D NMR | [1H, 13C]-HSQC NMR Spectrum (2D, 600 MHz, CD3OD, experimental) | 2012-12-05 | Wishart Lab | View Spectrum |
IR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-03 | FELIX lab | View Spectrum |
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Disease References | Colorectal cancer |
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- Brown DG, Rao S, Weir TL, O'Malia J, Bazan M, Brown RJ, Ryan EP: Metabolomics and metabolic pathway networks from human colorectal cancers, adjacent mucosa, and stool. Cancer Metab. 2016 Jun 6;4:11. doi: 10.1186/s40170-016-0151-y. eCollection 2016. [PubMed:27275383 ]
- Sinha R, Ahn J, Sampson JN, Shi J, Yu G, Xiong X, Hayes RB, Goedert JJ: Fecal Microbiota, Fecal Metabolome, and Colorectal Cancer Interrelations. PLoS One. 2016 Mar 25;11(3):e0152126. doi: 10.1371/journal.pone.0152126. eCollection 2016. [PubMed:27015276 ]
- Goedert JJ, Sampson JN, Moore SC, Xiao Q, Xiong X, Hayes RB, Ahn J, Shi J, Sinha R: Fecal metabolomics: assay performance and association with colorectal cancer. Carcinogenesis. 2014 Sep;35(9):2089-96. doi: 10.1093/carcin/bgu131. Epub 2014 Jul 18. [PubMed:25037050 ]
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