Hmdb loader
Record Information
Version5.0
StatusDetected and Quantified
Creation Date2006-08-13 23:51:34 UTC
Update Date2022-09-22 17:43:53 UTC
HMDB IDHMDB0004669
Secondary Accession Numbers
  • HMDB04669
Metabolite Identification
Common Name9-OxoODE
Description9-OxoODE, also known as 9-KODE or (10E,12Z)9-oxoode, belongs to the class of organic compounds known as lineolic acids and derivatives. These are derivatives of lineolic acid. Lineolic acid is a polyunsaturated omega-6 18 carbon long fatty acid, with two CC double bonds at the 9- and 12-positions. Thus, 9-oxoode is considered to be an octadecanoid. Based on a literature review a significant number of articles have been published on 9-OxoODE.
Structure
Data?1582752311
Synonyms
ValueSource
(10E,12Z)-9-Oxooctadeca-10,12-dienoic acidChEBI
(10E,12Z)9-oxo-ODEChEBI
(10E,12Z)9-OxoODEChEBI
9-Keto-10E,12Z-octadecadienoic acidChEBI
9-KODEChEBI
9-oxo-10E,12Z-Octadecadienoic acidChEBI
(10E,12Z)-9-Oxooctadeca-10,12-dienoateGenerator
9-Keto-10E,12Z-octadecadienoateGenerator
9-oxo-10E,12Z-OctadecadienoateGenerator
9-oxo-ODEHMDB
9-OxoODEChEBI
Chemical FormulaC18H30O3
Average Molecular Weight294.429
Monoisotopic Molecular Weight294.219494826
IUPAC Name(10E,12Z)-9-oxooctadeca-10,12-dienoic acid
Traditional Name9-OxoODE
CAS Registry NumberNot Available
SMILES
CCCCC\C=C/C=C/C(=O)CCCCCCCC(O)=O
InChI Identifier
InChI=1S/C18H30O3/c1-2-3-4-5-6-8-11-14-17(19)15-12-9-7-10-13-16-18(20)21/h6,8,11,14H,2-5,7,9-10,12-13,15-16H2,1H3,(H,20,21)/b8-6-,14-11+
InChI KeyLUZSWWYKKLTDHU-ZJHFMPGASA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as lineolic acids and derivatives. These are derivatives of lineolic acid. Lineolic acid is a polyunsaturated omega-6 18 carbon long fatty acid, with two CC double bonds at the 9- and 12-positions.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassLineolic acids and derivatives
Direct ParentLineolic acids and derivatives
Alternative Parents
Substituents
  • Octadecanoid
  • Long-chain fatty acid
  • Unsaturated fatty acid
  • Fatty acid
  • Acryloyl-group
  • Enone
  • Alpha,beta-unsaturated ketone
  • Ketone
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxide
  • Organic oxygen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic Properties

Experimental Collision Cross Sections

Adduct TypeData SourceCCS Value (Å2)Reference
[M-H]-Not Available180.567http://allccs.zhulab.cn/database/detail?ID=AllCCS00001900
[M+H]+Not Available184.2http://allccs.zhulab.cn/database/detail?ID=AllCCS00001900
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0013 g/LALOGPS
logP5.62ALOGPS
logP5.6ChemAxon
logS-5.4ALOGPS
pKa (Strongest Acidic)4.61ChemAxon
pKa (Strongest Basic)-4.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area54.37 ŲChemAxon
Rotatable Bond Count14ChemAxon
Refractivity89.14 m³·mol⁻¹ChemAxon
Polarizability35.92 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+183.00930932474
DeepCCS[M-H]-180.65130932474
DeepCCS[M-2H]-213.53730932474
DeepCCS[M+Na]+189.10330932474
AllCCS[M+H]+179.332859911
AllCCS[M+H-H2O]+176.232859911
AllCCS[M+NH4]+182.132859911
AllCCS[M+Na]+182.932859911
AllCCS[M-H]-179.532859911
AllCCS[M+Na-2H]-181.032859911
AllCCS[M+HCOO]-182.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
9-OxoODECCCCC\C=C/C=C/C(=O)CCCCCCCC(O)=O3780.3Standard polar33892256
9-OxoODECCCCC\C=C/C=C/C(=O)CCCCCCCC(O)=O2277.5Standard non polar33892256
9-OxoODECCCCC\C=C/C=C/C(=O)CCCCCCCC(O)=O2465.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
9-OxoODE,1TMS,isomer #1CCCCC/C=C\C=C\C(=O)CCCCCCCC(=O)O[Si](C)(C)C2508.0Semi standard non polar33892256
9-OxoODE,1TMS,isomer #2CCCCC/C=C\C=C\C(=CCCCCCCC(=O)O)O[Si](C)(C)C2650.5Semi standard non polar33892256
9-OxoODE,2TMS,isomer #1CCCCC/C=C\C=C\C(=CCCCCCCC(=O)O[Si](C)(C)C)O[Si](C)(C)C2639.5Semi standard non polar33892256
9-OxoODE,2TMS,isomer #1CCCCC/C=C\C=C\C(=CCCCCCCC(=O)O[Si](C)(C)C)O[Si](C)(C)C2548.5Standard non polar33892256
9-OxoODE,2TMS,isomer #1CCCCC/C=C\C=C\C(=CCCCCCCC(=O)O[Si](C)(C)C)O[Si](C)(C)C2653.1Standard polar33892256
9-OxoODE,1TBDMS,isomer #1CCCCC/C=C\C=C\C(=O)CCCCCCCC(=O)O[Si](C)(C)C(C)(C)C2757.7Semi standard non polar33892256
9-OxoODE,1TBDMS,isomer #2CCCCC/C=C\C=C\C(=CCCCCCCC(=O)O)O[Si](C)(C)C(C)(C)C2900.5Semi standard non polar33892256
9-OxoODE,2TBDMS,isomer #1CCCCC/C=C\C=C\C(=CCCCCCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3131.2Semi standard non polar33892256
9-OxoODE,2TBDMS,isomer #1CCCCC/C=C\C=C\C(=CCCCCCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2937.3Standard non polar33892256
9-OxoODE,2TBDMS,isomer #1CCCCC/C=C\C=C\C(=CCCCCCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2807.4Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 9-OxoODE GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-9460000000-15e80ef34a1debfc09682017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-OxoODE GC-MS (1 TMS) - 70eV, Positivesplash10-0kmr-9542000000-0ccd4c1d848269239ab62017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-OxoODE GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 10V, Positive-QTOFsplash10-004j-0190000000-60d81d12a11892c6999a2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 20V, Positive-QTOFsplash10-0a7j-8980000000-a60d7dfde80f5bf722b52017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 40V, Positive-QTOFsplash10-05nf-9310000000-09391ce48e072e4093fd2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 10V, Negative-QTOFsplash10-0006-0090000000-fa2d23e4158dbe12aafe2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 20V, Negative-QTOFsplash10-00tg-1790000000-63f9d414f1b5928183282017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 40V, Negative-QTOFsplash10-0c03-7910000000-5bf4d335642db628bb482017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 10V, Negative-QTOFsplash10-0006-0090000000-e925eef3dc0f4d8cea022021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 20V, Negative-QTOFsplash10-0006-0390000000-398c3f7d6e13ca3e756f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 40V, Negative-QTOFsplash10-0a6u-5920000000-79b91d8ba73ffe3a75972021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 10V, Positive-QTOFsplash10-004j-1290000000-605222a3edda7b9c44602021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 20V, Positive-QTOFsplash10-0a7i-8940000000-46e196ac4439dda358822021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-OxoODE 40V, Positive-QTOFsplash10-0api-9200000000-a3f4eb735df6176bb3ff2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen Locations
  • Blood
  • Cerebrospinal Fluid (CSF)
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified0.00241 +/- 0.00029 uMAdult (>18 years old)Both
Normal
details
BloodDetected and Quantified0.00241 +/- 0.00029 uMAdult (>18 years old)Both
Normal
details
BloodDetected and Quantified0.0053 +/- 0.0027 uMAdult (>18 years old)Both
Normal
details
Cerebrospinal Fluid (CSF)Detected and Quantified0.00063 +/- 0.00011 uMAdult (>18 years old)Both
Normal
    • John W. Newman, U...
details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
UrineDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedCancer patients undergoing total body irradiation details
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB023397
KNApSAcK IDNot Available
Chemspider ID8014803
KEGG Compound IDC14766
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound9839084
PDB IDNot Available
ChEBI ID72842
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available