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Showing metabocard for Dimethyl sulfone (HMDB0004983)

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Record Information
Version5.0
StatusDetected and Quantified
Creation Date2006-09-13 08:28:37 UTC
Update Date2023-02-21 17:17:05 UTC
HMDB IDHMDB0004983
Secondary Accession Numbers
  • HMDB0006702
  • HMDB04983
  • HMDB06702
Metabolite Identification
Common NameDimethyl sulfone
DescriptionDimethyl sulfone, also known as sulfonylbismethane or lignisul MSM, belongs to the class of organic compounds known as sulfones. Sulfones are compounds containing a sulfonyl group, which has the general structure RS(=O)2R' (R,R' =alkyl, aryl), attached to two carbon atoms. Dimethyl sulfone (DMSO2) is an organic sulfur compound belonging to a class of chemicals known as sulfones. It derives from dietary sources, from intestinal bacterial metabolism and from human endogenous methanethiol metabolism. DMSO2 reflects its close chemical relationship to dimethyl sulfoxide (DMSO), which differs only in the oxidation state of the sulfur atom. Dimethyl sulfone is possibly neutral. Dimethyl sulfone exists in all living organisms, ranging from bacteria to humans. DMSO2 is the primary metabolite of DMSO in humans, and it shares some of the properties of DMSO. Dimethyl sulfone is sulfurous tasting compound. dimethyl sulfone is found on average in the highest concentration in milk (cow). Dimethyl sulfone has also been detected, but not quantified in asparagus and guava. This could make dimethyl sulfone a potential biomarker for the consumption of these foods. Dimethyl sulfone can be found in Afipia. It occurs naturally in some primitive plants and is present in small amounts in many foods and beverages. Dimethyl sulfone can be found in plasma and CSF of normal humans.
Structure
Data?1676999825
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0004983 (Dimethyl sulfone)


  Mrv1652303202019002D          

  5  4  0  0  0  0            999 V2000
   15.6007  -12.0678    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   16.3152  -11.6553    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0131  -12.7823    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.8862  -12.4803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1882  -11.3534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  2  0  0  0  0
  1  4  1  0  0  0  0
  1  5  1  0  0  0  0
M  END
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3D MOL for HMDB0004983 (Dimethyl sulfone)

HMDB0004983
     RDKit          3D
Dimethyl sulfone
 11 10  0  0  0  0  0  0  0  0999 V2000
    1.4185    0.3212   -0.2323 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0132   -0.3103    0.6572 S   0  0  0  0  0  6  0  0  0  0  0  0
   -1.4239    0.0000   -0.3327 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1301    0.3478    2.0027 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1833   -1.7918    0.9090 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7515   -0.5056   -0.9100 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1038    1.2140   -0.8397 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2452    0.5829    0.4285 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2312    0.8332   -1.0239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3200    0.2319    0.2684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6101   -0.9232   -0.9272 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  0
  2  5  2  0
  1  6  1  0
  1  7  1  0
  1  8  1  0
  3  9  1  0
  3 10  1  0
  3 11  1  0
M  END
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3D SDF for HMDB0004983 (Dimethyl sulfone)


  Mrv1652303202019002D          

  5  4  0  0  0  0            999 V2000
   15.6007  -12.0678    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   16.3152  -11.6553    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0131  -12.7823    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.8862  -12.4803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1882  -11.3534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  2  0  0  0  0
  1  4  1  0  0  0  0
  1  5  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0004983

> <DATABASE_NAME>
hmdb

> <SMILES>
CS(C)(=O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C2H6O2S/c1-5(2,3)4/h1-2H3

> <INCHI_KEY>
HHVIBTZHLRERCL-UHFFFAOYSA-N

> <FORMULA>
C2H6O2S

> <MOLECULAR_WEIGHT>
94.133

> <EXACT_MASS>
94.008850126

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
11

> <JCHEM_AVERAGE_POLARIZABILITY>
8.602570349100972

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
methanesulfonylmethane

> <ALOGPS_LOGP>
-0.95

> <JCHEM_LOGP>
-1.3009717433333332

> <ALOGPS_LOGS>
-0.23

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
34.14

> <JCHEM_REFRACTIVITY>
20.533

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.58e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methylsulfonylmethane

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for HMDB0004983 (Dimethyl sulfone)

HMDB0004983
     RDKit          3D
Dimethyl sulfone
 11 10  0  0  0  0  0  0  0  0999 V2000
    1.4185    0.3212   -0.2323 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0132   -0.3103    0.6572 S   0  0  0  0  0  6  0  0  0  0  0  0
   -1.4239    0.0000   -0.3327 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1301    0.3478    2.0027 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1833   -1.7918    0.9090 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7515   -0.5056   -0.9100 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1038    1.2140   -0.8397 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2452    0.5829    0.4285 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2312    0.8332   -1.0239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3200    0.2319    0.2684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6101   -0.9232   -0.9272 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  0
  2  5  2  0
  1  6  1  0
  1  7  1  0
  1  8  1  0
  3  9  1  0
  3 10  1  0
  3 11  1  0
M  END
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PDB for HMDB0004983 (Dimethyl sulfone)

HEADER    PROTEIN                                 20-MAR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-MAR-20         0                                  
HETATM    1  S   UNK     0      29.121 -22.527   0.000  0.00  0.00           S+0
HETATM    2  O   UNK     0      30.455 -21.757   0.000  0.00  0.00           O+0
HETATM    3  O   UNK     0      29.891 -23.860   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      27.788 -23.297   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      28.351 -21.193   0.000  0.00  0.00           C+0
CONECT    1    2    3    4    5                                             
CONECT    2    1                                                            
CONECT    3    1                                                            
CONECT    4    1                                                            
CONECT    5    1                                                            
MASTER        0    0    0    0    0    0    0    0    5    0    8    0
END
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3D PDB for HMDB0004983 (Dimethyl sulfone)

COMPND    HMDB0004983
HETATM    1  C1  UNL     1       1.418   0.321  -0.232  1.00  0.00           C  
HETATM    2  S1  UNL     1       0.013  -0.310   0.657  1.00  0.00           S  
HETATM    3  C2  UNL     1      -1.424   0.000  -0.333  1.00  0.00           C  
HETATM    4  O1  UNL     1      -0.130   0.348   2.003  1.00  0.00           O  
HETATM    5  O2  UNL     1       0.183  -1.792   0.909  1.00  0.00           O  
HETATM    6  H1  UNL     1       1.752  -0.506  -0.910  1.00  0.00           H  
HETATM    7  H2  UNL     1       1.104   1.214  -0.840  1.00  0.00           H  
HETATM    8  H3  UNL     1       2.245   0.583   0.429  1.00  0.00           H  
HETATM    9  H4  UNL     1      -1.231   0.833  -1.024  1.00  0.00           H  
HETATM   10  H5  UNL     1      -2.320   0.232   0.268  1.00  0.00           H  
HETATM   11  H6  UNL     1      -1.610  -0.923  -0.927  1.00  0.00           H  
CONECT    1    2    6    7    8
CONECT    2    3    4    4    5
CONECT    2    5
CONECT    3    9   10   11
END
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SMILES for HMDB0004983 (Dimethyl sulfone)

CS(C)(=O)=O
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INCHI for HMDB0004983 (Dimethyl sulfone)

InChI=1S/C2H6O2S/c1-5(2,3)4/h1-2H3
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View in JSmolView NMR AssignmentsView Stereo Labels
Synonyms
ValueSource
Dimethyl sulphoneChEBI
MethylsulfonylmethaneChEBI
SulfonylbismethaneChEBI
SulphonylbismethaneChEBI
MethylsulphonylmethaneGenerator
Dimethyl sulfone, 13C-labeledMeSH
Methyl sulfoneMeSH
Methyl sulfonmethaneMeSH
(Methylsulfonyl)methaneHMDB
DimethylsulfoneHMDB
Lignisul MSMHMDB
Opti MSMHMDB
Sulfonylbis-methaneHMDB
Dimethyl sulfoneChEBI
SulphonyldimethaneGenerator, HMDB
Chemical FormulaC2H6O2S
Average Molecular Weight94.133
Monoisotopic Molecular Weight94.008850126
IUPAC Namemethanesulfonylmethane
Traditional Namemethylsulfonylmethane
CAS Registry Number67-71-0
SMILES
CS(C)(=O)=O
InChI Identifier
InChI=1S/C2H6O2S/c1-5(2,3)4/h1-2H3
InChI KeyHHVIBTZHLRERCL-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sulfones. Sulfones are compounds containing a sulfonyl group( which as the general structure RS(=O)2R' (R,R' =alkyl, aryl)) attached to two carbon atoms.
KingdomOrganic compounds
Super ClassOrganosulfur compounds
ClassSulfonyls
Sub ClassSulfones
Direct ParentSulfones
Alternative Parents
Substituents
  • Sulfone
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Source