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Showing metabocard for 2-Heptenoic acid (HMDB0031484)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:43:36 UTC
Update Date2023-02-21 17:20:38 UTC
HMDB IDHMDB0031484
Secondary Accession Numbers
  • HMDB31484
Metabolite Identification
Common Name2-Heptenoic acid
Description2-Heptenoic acid, also known as 7:1, N-5 trans or (e)-2-heptenoate, belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms. Based on a literature review a small amount of articles have been published on 2-Heptenoic acid.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0031484 (2-Heptenoic acid)

  Mrv0541 02241216432D          

  9  8  0  0  0  0            999 V2000
   -1.4434   -1.4434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7009   -1.0308    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0409   -1.4434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7009   -0.2058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0409    0.2059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0409    1.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7009    1.4434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4434    1.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4434    0.2059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
M  END
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3D MOL for HMDB0031484 (2-Heptenoic acid)

HMDB0031484
     RDKit          3D
2-Heptenoic acid
 21 20  0  0  0  0  0  0  0  0999 V2000
   -1.7175    1.1280   -0.4809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1447   -0.2758   -0.2626 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1396   -1.3409   -0.4285 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0488   -1.3737    0.4368 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8986   -0.1863    0.3309 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1764   -0.2521   -0.0735 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9353    0.9832   -0.1449 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1463    0.9050   -0.5302 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3738    2.1997    0.1901 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5860    1.6653   -0.9827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6068    1.6989    0.4689 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8935    1.2719   -1.2005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9710   -0.5073   -1.0046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6780   -0.3324    0.7224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6924   -2.3251   -0.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8454   -1.3872   -1.5068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1975   -1.6107    1.5193 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7025   -2.2560    0.1520 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5437    0.7974    0.5878 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5976   -1.2067   -0.3304 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0494    2.4048    1.1266 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  1 10  1  0
  1 11  1  0
  1 12  1  0
  2 13  1  0
  2 14  1  0
  3 15  1  0
  3 16  1  0
  4 17  1  0
  4 18  1  0
  5 19  1  0
  6 20  1  0
  9 21  1  0
M  END
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3D SDF for HMDB0031484 (2-Heptenoic acid)

  Mrv0541 02241216432D          

  9  8  0  0  0  0            999 V2000
   -1.4434   -1.4434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7009   -1.0308    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0409   -1.4434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7009   -0.2058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0409    0.2059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0409    1.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7009    1.4434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4434    1.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4434    0.2059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0031484

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCC\C=C\C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C7H12O2/c1-2-3-4-5-6-7(8)9/h5-6H,2-4H2,1H3,(H,8,9)/b6-5+

> <INCHI_KEY>
YURNCBVQZBJDAJ-AATRIKPKSA-N

> <FORMULA>
C7H12O2

> <MOLECULAR_WEIGHT>
128.169

> <EXACT_MASS>
128.083729628

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
14.364370463538695

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E)-hept-2-enoic acid

> <ALOGPS_LOGP>
2.41

> <JCHEM_LOGP>
2.253288282333333

> <ALOGPS_LOGS>
-1.91

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.196746623470561

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
36.7679

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.59e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(E)-2-heptenoic acid

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for HMDB0031484 (2-Heptenoic acid)

HMDB0031484
     RDKit          3D
2-Heptenoic acid
 21 20  0  0  0  0  0  0  0  0999 V2000
   -1.7175    1.1280   -0.4809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1447   -0.2758   -0.2626 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1396   -1.3409   -0.4285 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0488   -1.3737    0.4368 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8986   -0.1863    0.3309 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1764   -0.2521   -0.0735 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9353    0.9832   -0.1449 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1463    0.9050   -0.5302 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3738    2.1997    0.1901 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5860    1.6653   -0.9827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6068    1.6989    0.4689 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8935    1.2719   -1.2005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9710   -0.5073   -1.0046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6780   -0.3324    0.7224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6924   -2.3251   -0.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8454   -1.3872   -1.5068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1975   -1.6107    1.5193 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7025   -2.2560    0.1520 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5437    0.7974    0.5878 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5976   -1.2067   -0.3304 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0494    2.4048    1.1266 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  1 10  1  0
  1 11  1  0
  1 12  1  0
  2 13  1  0
  2 14  1  0
  3 15  1  0
  3 16  1  0
  4 17  1  0
  4 18  1  0
  5 19  1  0
  6 20  1  0
  9 21  1  0
M  END
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PDB for HMDB0031484 (2-Heptenoic acid)

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  O   UNK     0      -2.694  -2.694   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -1.308  -1.924   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -0.076  -2.694   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      -1.308  -0.384   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.076   0.384   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.076   1.924   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.308   2.694   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.694   1.924   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.694   0.384   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8                                                            
MASTER        0    0    0    0    0    0    0    0    9    0   16    0
END
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3D PDB for HMDB0031484 (2-Heptenoic acid)

COMPND    HMDB0031484
HETATM    1  C1  UNL     1      -1.718   1.128  -0.481  1.00  0.00           C  
HETATM    2  C2  UNL     1      -2.145  -0.276  -0.263  1.00  0.00           C  
HETATM    3  C3  UNL     1      -1.140  -1.341  -0.428  1.00  0.00           C  
HETATM    4  C4  UNL     1       0.049  -1.374   0.437  1.00  0.00           C  
HETATM    5  C5  UNL     1       0.899  -0.186   0.331  1.00  0.00           C  
HETATM    6  C6  UNL     1       2.176  -0.252  -0.073  1.00  0.00           C  
HETATM    7  C7  UNL     1       2.935   0.983  -0.145  1.00  0.00           C  
HETATM    8  O1  UNL     1       4.146   0.905  -0.530  1.00  0.00           O  
HETATM    9  O2  UNL     1       2.374   2.200   0.190  1.00  0.00           O  
HETATM   10  H1  UNL     1      -2.586   1.665  -0.983  1.00  0.00           H  
HETATM   11  H2  UNL     1      -1.607   1.699   0.469  1.00  0.00           H  
HETATM   12  H3  UNL     1      -0.893   1.272  -1.201  1.00  0.00           H  
HETATM   13  H4  UNL     1      -2.971  -0.507  -1.005  1.00  0.00           H  
HETATM   14  H5  UNL     1      -2.678  -0.332   0.722  1.00  0.00           H  
HETATM   15  H6  UNL     1      -1.692  -2.325  -0.278  1.00  0.00           H  
HETATM   16  H7  UNL     1      -0.845  -1.387  -1.507  1.00  0.00           H  
HETATM   17  H8  UNL     1      -0.197  -1.611   1.519  1.00  0.00           H  
HETATM   18  H9  UNL     1       0.703  -2.256   0.152  1.00  0.00           H  
HETATM   19  H10 UNL     1       0.544   0.797   0.588  1.00  0.00           H  
HETATM   20  H11 UNL     1       2.598  -1.207  -0.330  1.00  0.00           H  
HETATM   21  H12 UNL     1       2.049   2.405   1.127  1.00  0.00           H  
CONECT    1    2   10   11   12
CONECT    2    3   13   14
CONECT    3    4   15   16
CONECT    4    5   17   18
CONECT    5    6    6   19
CONECT    6    7   20
CONECT    7    8    8    9
CONECT    9   21
END
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SMILES for HMDB0031484 (2-Heptenoic acid)

CCCC\C=C\C(O)=O
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INCHI for HMDB0031484 (2-Heptenoic acid)

InChI=1S/C7H12O2/c1-2-3-4-5-6-7(8)9/h5-6H,2-4H2,1H3,(H,8,9)/b6-5+
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View in JSmolView NMR AssignmentsView Stereo Labels
Synonyms
Chemical FormulaC7H12O2
Average Molecular Weight128.169
Monoisotopic Molecular Weight128.083729628
IUPAC Name(2E)-hept-2-enoic acid
Traditional Name(E)-2-heptenoic acid
CAS Registry Number18999-28-5
SMILES
CCCC\C=C\C(O)=O
InChI Identifier
InChI=1S/C7H12O2/c1-2-3-4-5-6-7(8)9/h5-6H,2-4H2,1H3,(H,8,9)/b6-5+
InChI KeyYURNCBVQZBJDAJ-AATRIKPKSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentMedium-chain fatty acids
Alternative Parents
Substituents
  • Medium-chain fatty acid
  • Unsaturated fatty acid
  • Straight chain fatty acid
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effect
Organoleptic effect
Disposition
Biological locationRoute of exposureSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling Point224.00 to 228.00 °C. @ 760.00 mm HgThe Good Scents Company Information System
Water Solubility2389 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP2.186 (est)The Good Scents Company Information System
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB014141
KNApSAcK IDC00011896
Chemspider ID4445836
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5282709
PDB IDNot Available
ChEBI ID38364
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1436261
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.