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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 19:57:52 UTC

Update Date

2022-03-07 02:54:19 UTC

HMDB ID

HMDB0035025

Secondary Accession Numbers

HMDB35025

Metabolite Identification

Common Name

6Z-8-Hydroxygeraniol 8-O-glucoside

Description

6Z-8-Hydroxygeraniol 8-O-glucoside belongs to the class of organic compounds known as terpene glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically bound to a terpene backbone. Based on a literature review a small amount of articles have been published on 6Z-8-Hydroxygeraniol 8-O-glucoside.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0035025
     RDKit          3D
6Z-8-Hydroxygeraniol 8-O-glucoside
 51 51  0  0  0  0  0  0  0  0999 V2000
   -5.7660    0.0093    3.2206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0502   -0.4515    1.9632 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7699   -0.2414    1.7968 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9682   -0.6431    0.6200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3976    0.6137    0.0022 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5678    0.3179   -1.1988 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1208   -0.3652   -2.4026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2821    0.6576   -1.2427 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5836    0.3803   -2.4242 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6588   -0.4212   -2.1413 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5165    0.1001   -1.1911 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5607   -0.7644   -0.1267 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4421   -0.4356    0.8639 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4651   -1.5510    1.1034 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8357   -2.7279    1.4761 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1337    0.8767    0.6917 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2540    1.8795    1.1368 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6600    1.1299   -0.6790 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0322    0.8616   -0.7947 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9207    0.2958   -1.7076 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9544    1.0049   -2.9044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8923   -1.1296    0.9741 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4610   -2.2915    1.5575 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5162    0.7792    2.9859 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0078    0.4379    3.9010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2663   -0.8915    3.6216 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2432    0.2890    2.6213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5170   -1.2549   -0.0754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0850   -1.2705    0.9565 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2025    1.2978   -0.3081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7767    1.1423    0.7349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0717    0.2779   -3.2986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5150   -1.2867   -2.5978 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1625   -0.7389   -2.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1130    1.1542   -0.3634 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0141   -0.0852   -3.2530 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9921    1.3801   -2.7402 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1364    1.0845   -0.8535 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8596   -0.3732    1.8269 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1104   -1.6798    0.1979 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1560   -1.2793    1.9234 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4059   -3.4876    1.1701 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9978    0.8855    1.4188 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0977    1.6708    2.1118 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5474    2.2280   -0.9035 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3233    1.3192   -1.6337 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4666   -0.6433   -1.8707 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4866    0.5566   -3.6084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4373   -1.4623    0.0550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8058   -0.4785    0.7884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8415   -2.8239    0.8141 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 13 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
  2 22  1  0
 22 23  1  0
 20 11  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  0
  4 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  7 32  1  0
  7 33  1  0
  7 34  1  0
  8 35  1  0
  9 36  1  0
  9 37  1  0
 11 38  1  0
 13 39  1  0
 14 40  1  0
 14 41  1  0
 15 42  1  0
 16 43  1  0
 17 44  1  0
 18 45  1  0
 19 46  1  0
 20 47  1  0
 21 48  1  0
 22 49  1  0
 22 50  1  0
 23 51  1  0
M  END


  Mrv0541 02241207422D          

 23 23  0  0  0  0            999 V2000
    1.3422    2.3399    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3422    1.5136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5864    1.1697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1028    1.5136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7673    1.0118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0993    1.1003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0993    0.2753    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3422   -0.2072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3422   -1.0324    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5864   -1.4443    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0993   -2.3399    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0993   -1.4443    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7673    0.2419    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4320   -0.1431    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4320   -0.9118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7673   -1.2954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1039   -0.9118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1039   -0.1431    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2810   -1.5790    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1039   -2.2463    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7673   -2.0654    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0993   -1.2968    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0993    0.2419    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  6  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5 13  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  9 12  1  0  0  0  0
 11 12  1  0  0  0  0
 13 14  1  0  0  0  0
 13 18  1  0  0  0  0
 14 15  1  0  0  0  0
 14 23  1  0  0  0  0
 15 16  1  0  0  0  0
 15 22  1  0  0  0  0
 16 17  1  0  0  0  0
 16 21  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0035025

> <DATABASE_NAME>
hmdb

> <SMILES>
C\C(CO)=C\CC\C(C)=C\COC1OC(CO)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C16H28O7/c1-10(4-3-5-11(2)8-17)6-7-22-16-15(21)14(20)13(19)12(9-18)23-16/h5-6,12-21H,3-4,7-9H2,1-2H3/b10-6+,11-5-

> <INCHI_KEY>
XZHWSTJFHFQEOY-NYHKZRGGSA-N

> <FORMULA>
C16H28O7

> <MOLECULAR_WEIGHT>
332.3893

> <EXACT_MASS>
332.18350325

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_AVERAGE_POLARIZABILITY>
36.06316798612159

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-{[(2E,6Z)-8-hydroxy-3,7-dimethylocta-2,6-dien-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <ALOGPS_LOGP>
-0.36

> <JCHEM_LOGP>
-0.5492235063333332

> <ALOGPS_LOGS>
-1.96

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.19993517227886

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.210507742544406

> <JCHEM_PKA_STRONGEST_BASIC>
-2.0797068162582972

> <JCHEM_POLAR_SURFACE_AREA>
119.61000000000001

> <JCHEM_REFRACTIVITY>
85.37009999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.63e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-{[(2E,6Z)-8-hydroxy-3,7-dimethylocta-2,6-dien-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0035025
     RDKit          3D
6Z-8-Hydroxygeraniol 8-O-glucoside
 51 51  0  0  0  0  0  0  0  0999 V2000
   -5.7660    0.0093    3.2206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0502   -0.4515    1.9632 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7699   -0.2414    1.7968 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9682   -0.6431    0.6200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3976    0.6137    0.0022 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5678    0.3179   -1.1988 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1208   -0.3652   -2.4026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2821    0.6576   -1.2427 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5836    0.3803   -2.4242 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6588   -0.4212   -2.1413 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5165    0.1001   -1.1911 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5607   -0.7644   -0.1267 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4421   -0.4356    0.8639 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4651   -1.5510    1.1034 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8357   -2.7279    1.4761 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1337    0.8767    0.6917 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2540    1.8795    1.1368 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6600    1.1299   -0.6790 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0322    0.8616   -0.7947 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9207    0.2958   -1.7076 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9544    1.0049   -2.9044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8923   -1.1296    0.9741 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4610   -2.2915    1.5575 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5162    0.7792    2.9859 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0078    0.4379    3.9010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2663   -0.8915    3.6216 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2432    0.2890    2.6213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5170   -1.2549   -0.0754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0850   -1.2705    0.9565 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2025    1.2978   -0.3081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7767    1.1423    0.7349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0717    0.2779   -3.2986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5150   -1.2867   -2.5978 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1625   -0.7389   -2.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1130    1.1542   -0.3634 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0141   -0.0852   -3.2530 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9921    1.3801   -2.7402 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1364    1.0845   -0.8535 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8596   -0.3732    1.8269 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1104   -1.6798    0.1979 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1560   -1.2793    1.9234 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4059   -3.4876    1.1701 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9978    0.8855    1.4188 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0977    1.6708    2.1118 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5474    2.2280   -0.9035 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3233    1.3192   -1.6337 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4666   -0.6433   -1.8707 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4866    0.5566   -3.6084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4373   -1.4623    0.0550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8058   -0.4785    0.7884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8415   -2.8239    0.8141 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 13 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
  2 22  1  0
 22 23  1  0
 20 11  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  0
  4 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  7 32  1  0
  7 33  1  0
  7 34  1  0
  8 35  1  0
  9 36  1  0
  9 37  1  0
 11 38  1  0
 13 39  1  0
 14 40  1  0
 14 41  1  0
 15 42  1  0
 16 43  1  0
 17 44  1  0
 18 45  1  0
 19 46  1  0
 20 47  1  0
 21 48  1  0
 22 49  1  0
 22 50  1  0
 23 51  1  0
M  END

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0       2.505   4.368   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.505   2.825   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.095   2.183   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.192   2.825   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -1.432   1.889   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       3.919   2.054   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.919   0.514   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.505  -0.387   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.505  -1.927   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.095  -2.696   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       3.919  -4.368   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       3.919  -2.696   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.432   0.452   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.673  -0.267   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.673  -1.702   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.432  -2.418   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.194  -1.702   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -0.194  -0.267   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       0.525  -2.947   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -0.194  -4.193   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      -1.432  -3.855   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      -3.919  -2.421   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      -3.919   0.452   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4   13                                                       
CONECT    6    2    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   12                                                  
CONECT   10    9                                                            
CONECT   11   12                                                            
CONECT   12    9   11                                                       
CONECT   13    5   14   18                                                  
CONECT   14   13   15   23                                                  
CONECT   15   14   16   22                                                  
CONECT   16   15   17   21                                                  
CONECT   17   16   18   19                                                  
CONECT   18   13   17                                                       
CONECT   19   17   20                                                       
CONECT   20   19                                                            
CONECT   21   16                                                            
CONECT   22   15                                                            
CONECT   23   14                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   46    0
END

COMPND    HMDB0035025
HETATM    1  C1  UNL     1      -5.766   0.009   3.221  1.00  0.00           C  
HETATM    2  C2  UNL     1      -5.050  -0.452   1.963  1.00  0.00           C  
HETATM    3  C3  UNL     1      -3.770  -0.241   1.797  1.00  0.00           C  
HETATM    4  C4  UNL     1      -2.968  -0.643   0.620  1.00  0.00           C  
HETATM    5  C5  UNL     1      -2.398   0.614   0.002  1.00  0.00           C  
HETATM    6  C6  UNL     1      -1.568   0.318  -1.199  1.00  0.00           C  
HETATM    7  C7  UNL     1      -2.121  -0.365  -2.403  1.00  0.00           C  
HETATM    8  C8  UNL     1      -0.282   0.658  -1.243  1.00  0.00           C  
HETATM    9  C9  UNL     1       0.584   0.380  -2.424  1.00  0.00           C  
HETATM   10  O1  UNL     1       1.659  -0.421  -2.141  1.00  0.00           O  
HETATM   11  C10 UNL     1       2.517   0.100  -1.191  1.00  0.00           C  
HETATM   12  O2  UNL     1       2.561  -0.764  -0.127  1.00  0.00           O  
HETATM   13  C11 UNL     1       3.442  -0.436   0.864  1.00  0.00           C  
HETATM   14  C12 UNL     1       4.465  -1.551   1.103  1.00  0.00           C  
HETATM   15  O3  UNL     1       3.836  -2.728   1.476  1.00  0.00           O  
HETATM   16  C13 UNL     1       4.134   0.877   0.692  1.00  0.00           C  
HETATM   17  O4  UNL     1       3.254   1.880   1.137  1.00  0.00           O  
HETATM   18  C14 UNL     1       4.660   1.130  -0.679  1.00  0.00           C  
HETATM   19  O5  UNL     1       6.032   0.862  -0.795  1.00  0.00           O  
HETATM   20  C15 UNL     1       3.921   0.296  -1.708  1.00  0.00           C  
HETATM   21  O6  UNL     1       3.954   1.005  -2.904  1.00  0.00           O  
HETATM   22  C16 UNL     1      -5.892  -1.130   0.974  1.00  0.00           C  
HETATM   23  O7  UNL     1      -6.461  -2.292   1.558  1.00  0.00           O  
HETATM   24  H1  UNL     1      -6.516   0.779   2.986  1.00  0.00           H  
HETATM   25  H2  UNL     1      -5.008   0.438   3.901  1.00  0.00           H  
HETATM   26  H3  UNL     1      -6.266  -0.891   3.622  1.00  0.00           H  
HETATM   27  H4  UNL     1      -3.243   0.289   2.621  1.00  0.00           H  
HETATM   28  H5  UNL     1      -3.517  -1.255  -0.075  1.00  0.00           H  
HETATM   29  H6  UNL     1      -2.085  -1.270   0.956  1.00  0.00           H  
HETATM   30  H7  UNL     1      -3.203   1.298  -0.308  1.00  0.00           H  
HETATM   31  H8  UNL     1      -1.777   1.142   0.735  1.00  0.00           H  
HETATM   32  H9  UNL     1      -2.072   0.278  -3.299  1.00  0.00           H  
HETATM   33  H10 UNL     1      -1.515  -1.287  -2.598  1.00  0.00           H  
HETATM   34  H11 UNL     1      -3.163  -0.739  -2.215  1.00  0.00           H  
HETATM   35  H12 UNL     1       0.113   1.154  -0.363  1.00  0.00           H  
HETATM   36  H13 UNL     1       0.014  -0.085  -3.253  1.00  0.00           H  
HETATM   37  H14 UNL     1       0.992   1.380  -2.740  1.00  0.00           H  
HETATM   38  H15 UNL     1       2.136   1.085  -0.853  1.00  0.00           H  
HETATM   39  H16 UNL     1       2.860  -0.373   1.827  1.00  0.00           H  
HETATM   40  H17 UNL     1       5.110  -1.680   0.198  1.00  0.00           H  
HETATM   41  H18 UNL     1       5.156  -1.279   1.923  1.00  0.00           H  
HETATM   42  H19 UNL     1       4.406  -3.488   1.170  1.00  0.00           H  
HETATM   43  H20 UNL     1       4.998   0.885   1.419  1.00  0.00           H  
HETATM   44  H21 UNL     1       3.098   1.671   2.112  1.00  0.00           H  
HETATM   45  H22 UNL     1       4.547   2.228  -0.904  1.00  0.00           H  
HETATM   46  H23 UNL     1       6.323   1.319  -1.634  1.00  0.00           H  
HETATM   47  H24 UNL     1       4.467  -0.643  -1.871  1.00  0.00           H  
HETATM   48  H25 UNL     1       4.487   0.557  -3.608  1.00  0.00           H  
HETATM   49  H26 UNL     1      -5.437  -1.462   0.055  1.00  0.00           H  
HETATM   50  H27 UNL     1      -6.806  -0.478   0.788  1.00  0.00           H  
HETATM   51  H28 UNL     1      -6.842  -2.824   0.814  1.00  0.00           H  
CONECT    1    2   24   25   26
CONECT    2    3    3   22
CONECT    3    4   27
CONECT    4    5   28   29
CONECT    5    6   30   31
CONECT    6    7    8    8
CONECT    7   32   33   34
CONECT    8    9   35
CONECT    9   10   36   37
CONECT   10   11
CONECT   11   12   20   38
CONECT   12   13
CONECT   13   14   16   39
CONECT   14   15   40   41
CONECT   15   42
CONECT   16   17   18   43
CONECT   17   44
CONECT   18   19   20   45
CONECT   19   46
CONECT   20   21   47
CONECT   21   48
CONECT   22   23   49   50
CONECT   23   51
END

HMDB0035025
     RDKit          3D
6Z-8-Hydroxygeraniol 8-O-glucoside
 51 51  0  0  0  0  0  0  0  0999 V2000
   -5.7660    0.0093    3.2206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0502   -0.4515    1.9632 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7699   -0.2414    1.7968 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9682   -0.6431    0.6200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3976    0.6137    0.0022 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5678    0.3179   -1.1988 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1208   -0.3652   -2.4026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2821    0.6576   -1.2427 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5836    0.3803   -2.4242 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6588   -0.4212   -2.1413 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5165    0.1001   -1.1911 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5607   -0.7644   -0.1267 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4421   -0.4356    0.8639 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4651   -1.5510    1.1034 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8357   -2.7279    1.4761 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1337    0.8767    0.6917 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2540    1.8795    1.1368 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6600    1.1299   -0.6790 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0322    0.8616   -0.7947 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9207    0.2958   -1.7076 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9544    1.0049   -2.9044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8923   -1.1296    0.9741 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4610   -2.2915    1.5575 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5162    0.7792    2.9859 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0078    0.4379    3.9010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2663   -0.8915    3.6216 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2432    0.2890    2.6213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5170   -1.2549   -0.0754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0850   -1.2705    0.9565 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2025    1.2978   -0.3081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7767    1.1423    0.7349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0717    0.2779   -3.2986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5150   -1.2867   -2.5978 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1625   -0.7389   -2.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1130    1.1542   -0.3634 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0141   -0.0852   -3.2530 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9921    1.3801   -2.7402 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1364    1.0845   -0.8535 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8596   -0.3732    1.8269 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1104   -1.6798    0.1979 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1560   -1.2793    1.9234 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4059   -3.4876    1.1701 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9978    0.8855    1.4188 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0977    1.6708    2.1118 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5474    2.2280   -0.9035 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3233    1.3192   -1.6337 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4666   -0.6433   -1.8707 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4866    0.5566   -3.6084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4373   -1.4623    0.0550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8058   -0.4785    0.7884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8415   -2.8239    0.8141 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 13 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
  2 22  1  0
 22 23  1  0
 20 11  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  0
  4 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  7 32  1  0
  7 33  1  0
  7 34  1  0
  8 35  1  0
  9 36  1  0
  9 37  1  0
 11 38  1  0
 13 39  1  0
 14 40  1  0
 14 41  1  0
 15 42  1  0
 16 43  1  0
 17 44  1  0
 18 45  1  0
 19 46  1  0
 20 47  1  0
 21 48  1  0
 22 49  1  0
 22 50  1  0
 23 51  1  0
M  END

View in JSmol View NMR Assignments View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₁₆H₂₈O₇

Average Molecular Weight

332.3893

Monoisotopic Molecular Weight

332.18350325

IUPAC Name

2-{[(2E,6Z)-8-hydroxy-3,7-dimethylocta-2,6-dien-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

2-{[(2E,6Z)-8-hydroxy-3,7-dimethylocta-2,6-dien-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

C\C(CO)=C\CC\C(C)=C\COC1OC(CO)C(O)C(O)C1O

InChI Identifier

InChI=1S/C16H28O7/c1-10(4-3-5-11(2)8-17)6-7-22-16-15(21)14(20)13(19)12(9-18)23-16/h5-6,12-21H,3-4,7-9H2,1-2H3/b10-6+,11-5-

InChI Key

XZHWSTJFHFQEOY-NYHKZRGGSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically bound to a terpene backbone.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Terpene glycosides

Alternative Parents

Substituents

Terpene glycoside
Fatty acyl glycoside
Fatty acyl glycoside of mono- or disaccharide
Alkyl glycoside
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Monoterpenoid
Monocyclic monoterpenoid
Fatty alcohol
Oxane
Monosaccharide
Fatty acyl
Secondary alcohol
Organoheterocyclic compound
Polyol
Oxacycle
Acetal
Primary alcohol
Alcohol
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cytoplasm (FooDB: )
Extracellular (FooDB: )
Membrane (FooDB: )
Cell membrane (FooDB: )

Route of exposure

Enteral

Ingestion (FooDB: )

Source

Endogenous

Endogenous (FooDB: )

Plant

Plant (FooDB: )

Animal

Animal (FooDB: )

Exogenous

Food

Food (FooDB: )

Herb and spice

Herbs and Spices (FooDB: FOOD00866)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid peroxidation (FooDB: )

Biochemical process

Fatty acid metabolism (FooDB: )

Cellular process

Cell signaling (FooDB: )

Biochemical pathway

Lipid metabolism pathway (FooDB: )

Role

Biological role

Membrane stabilizer (FooDB: )

Nutrient

Nutrient (FooDB: )

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (FooDB: )

Emulsifier (FooDB: )

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	3.63 g/L	ALOGPS
logP	-0.36	ALOGPS
logP	-0.55	ChemAxon
logS	-2	ALOGPS
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-2.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	119.61 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	85.37 m³·mol⁻¹	ChemAxon
Polarizability	36.06 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	178.341	31661259
DarkChem	[M-H]-	172.29	31661259
DeepCCS	[M+H]+	188.807	30932474
DeepCCS	[M-H]-	186.448	30932474
DeepCCS	[M-2H]-	220.187	30932474
DeepCCS	[M+Na]+	195.539	30932474
AllCCS	[M+H]+	182.5	32859911
AllCCS	[M+H-H2O]+	179.8	32859911
AllCCS	[M+NH4]+	185.1	32859911
AllCCS	[M+Na]+	185.8	32859911
AllCCS	[M-H]-	178.9	32859911
AllCCS	[M+Na-2H]-	179.8	32859911
AllCCS	[M+HCOO]-	180.8	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
6Z-8-Hydroxygeraniol 8-O-glucoside	C\C(CO)=C\CC\C(C)=C\COC1OC(CO)C(O)C(O)C1O	3955.1	Standard polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside	C\C(CO)=C\CC\C(C)=C\COC1OC(CO)C(O)C(O)C1O	2712.7	Standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside	C\C(CO)=C\CC\C(C)=C\COC1OC(CO)C(O)C(O)C1O	2794.9	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
6Z-8-Hydroxygeraniol 8-O-glucoside,1TMS,isomer #1	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O)C1O)CO[Si](C)(C)C	2747.2	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,1TMS,isomer #2	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O)C(O)C1O)CO	2739.2	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,1TMS,isomer #3	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C)C(O)C1O)CO	2701.8	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,1TMS,isomer #4	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O[Si](C)(C)C)C1O)CO	2696.7	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,1TMS,isomer #5	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O)C1O[Si](C)(C)C)CO	2694.8	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TMS,isomer #1	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O)C(O)C1O)CO[Si](C)(C)C	2735.0	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TMS,isomer #10	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O[Si](C)(C)C)C1O[Si](C)(C)C)CO	2695.7	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TMS,isomer #2	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C)C(O)C1O)CO[Si](C)(C)C	2721.8	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TMS,isomer #3	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O[Si](C)(C)C)C1O)CO[Si](C)(C)C	2711.4	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TMS,isomer #4	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O)C1O[Si](C)(C)C)CO[Si](C)(C)C	2716.3	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TMS,isomer #5	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O)C1O)CO	2715.6	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TMS,isomer #6	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O)C(O[Si](C)(C)C)C1O)CO	2698.6	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TMS,isomer #7	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O)C(O)C1O[Si](C)(C)C)CO	2711.5	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TMS,isomer #8	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O)CO	2682.2	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TMS,isomer #9	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C)C(O)C1O[Si](C)(C)C)CO	2689.4	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TMS,isomer #1	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O)C1O)CO[Si](C)(C)C	2697.4	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TMS,isomer #10	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O[Si](C)(C)C)CO	2693.4	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TMS,isomer #2	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O)C(O[Si](C)(C)C)C1O)CO[Si](C)(C)C	2682.1	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TMS,isomer #3	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O)C(O)C1O[Si](C)(C)C)CO[Si](C)(C)C	2695.8	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TMS,isomer #4	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O)CO[Si](C)(C)C	2694.1	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TMS,isomer #5	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C)C(O)C1O[Si](C)(C)C)CO[Si](C)(C)C	2703.1	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TMS,isomer #6	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O[Si](C)(C)C)C1O[Si](C)(C)C)CO[Si](C)(C)C	2700.5	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TMS,isomer #7	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O)CO	2705.6	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TMS,isomer #8	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O)C1O[Si](C)(C)C)CO	2721.3	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TMS,isomer #9	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O)C(O[Si](C)(C)C)C1O[Si](C)(C)C)CO	2703.2	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,4TMS,isomer #1	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O)CO[Si](C)(C)C	2688.9	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,4TMS,isomer #2	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O)C1O[Si](C)(C)C)CO[Si](C)(C)C	2714.2	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,4TMS,isomer #3	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O)C(O[Si](C)(C)C)C1O[Si](C)(C)C)CO[Si](C)(C)C	2673.7	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,4TMS,isomer #4	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O[Si](C)(C)C)CO[Si](C)(C)C	2656.4	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,4TMS,isomer #5	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O[Si](C)(C)C)CO	2719.1	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,5TMS,isomer #1	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O[Si](C)(C)C)CO[Si](C)(C)C	2710.5	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,1TBDMS,isomer #1	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O)C1O)CO[Si](C)(C)C(C)(C)C	2979.8	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,1TBDMS,isomer #2	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O)C1O)CO	2949.3	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,1TBDMS,isomer #3	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O)C1O)CO	2955.8	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,1TBDMS,isomer #4	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O[Si](C)(C)C(C)(C)C)C1O)CO	2941.5	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,1TBDMS,isomer #5	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O)C1O[Si](C)(C)C(C)(C)C)CO	2948.0	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TBDMS,isomer #1	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O)C1O)CO[Si](C)(C)C(C)(C)C	3150.4	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TBDMS,isomer #10	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C)CO	3115.0	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TBDMS,isomer #2	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O)C1O)CO[Si](C)(C)C(C)(C)C	3162.5	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TBDMS,isomer #3	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O[Si](C)(C)C(C)(C)C)C1O)CO[Si](C)(C)C(C)(C)C	3144.1	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TBDMS,isomer #4	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O)C1O[Si](C)(C)C(C)(C)C)CO[Si](C)(C)C(C)(C)C	3157.2	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TBDMS,isomer #5	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O)C1O)CO	3122.7	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TBDMS,isomer #6	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O[Si](C)(C)C(C)(C)C)C1O)CO	3106.1	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TBDMS,isomer #7	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O)C1O[Si](C)(C)C(C)(C)C)CO	3111.5	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TBDMS,isomer #8	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O)CO	3107.5	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,2TBDMS,isomer #9	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O)C1O[Si](C)(C)C(C)(C)C)CO	3119.9	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TBDMS,isomer #1	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O)C1O)CO[Si](C)(C)C(C)(C)C	3354.6	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TBDMS,isomer #10	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C)CO	3283.0	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TBDMS,isomer #2	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O[Si](C)(C)C(C)(C)C)C1O)CO[Si](C)(C)C(C)(C)C	3349.4	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TBDMS,isomer #3	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O)C1O[Si](C)(C)C(C)(C)C)CO[Si](C)(C)C(C)(C)C	3347.8	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TBDMS,isomer #4	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O)CO[Si](C)(C)C(C)(C)C	3351.6	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TBDMS,isomer #5	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O)C1O[Si](C)(C)C(C)(C)C)CO[Si](C)(C)C(C)(C)C	3356.9	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TBDMS,isomer #6	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C)CO[Si](C)(C)C(C)(C)C	3359.2	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TBDMS,isomer #7	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O)CO	3299.3	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TBDMS,isomer #8	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O)C1O[Si](C)(C)C(C)(C)C)CO	3329.0	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,3TBDMS,isomer #9	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C)CO	3305.4	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,4TBDMS,isomer #1	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O)CO[Si](C)(C)C(C)(C)C	3544.4	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,4TBDMS,isomer #2	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O)C1O[Si](C)(C)C(C)(C)C)CO[Si](C)(C)C(C)(C)C	3573.1	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,4TBDMS,isomer #3	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C)CO[Si](C)(C)C(C)(C)C	3538.9	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,4TBDMS,isomer #4	C/C(=C/CC/C(C)=C/COC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C)CO[Si](C)(C)C(C)(C)C	3510.5	Semi standard non polar	33892256
6Z-8-Hydroxygeraniol 8-O-glucoside,4TBDMS,isomer #5	C/C(=C/CC/C(C)=C/COC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C)CO	3499.8	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside GC-MS (Non-derivatized) - 70eV, Positive	splash10-0w29-5968000000-d68f6a6132c1fbd1c7d7	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside GC-MS (5 TMS) - 70eV, Positive	splash10-004i-1120119000-5b2a7ca0f1fd8723679e	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 10V, Positive-QTOF	splash10-0159-1529000000-f0e54b720cc4090f3efe	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 20V, Positive-QTOF	splash10-0udi-3911000000-300526ab370b22c01fb1	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 40V, Positive-QTOF	splash10-0ukl-9510000000-b4f68506467ae77b1128	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 10V, Negative-QTOF	splash10-01q9-2619000000-b2150c304cf31edae863	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 20V, Negative-QTOF	splash10-03di-3912000000-1facb3144b976ede62f6	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 40V, Negative-QTOF	splash10-0a4l-9400000000-a5f79ac694a75669955d	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 10V, Negative-QTOF	splash10-001i-0009000000-0d8fc13ccd539e142ca8	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 20V, Negative-QTOF	splash10-0f8i-5649000000-c24d4ba072a3fdbb1020	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 40V, Negative-QTOF	splash10-0a70-9513000000-a290bb01cb519d648d6b	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 10V, Positive-QTOF	splash10-001i-2915000000-23b26c67a2f1139be1f0	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 20V, Positive-QTOF	splash10-0uyr-7900000000-2b356e2fa437fbe19f00	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 6Z-8-Hydroxygeraniol 8-O-glucoside 40V, Positive-QTOF	splash10-067i-9300000000-af3e1d3399aadce5ed78	2021-09-24	Wishart Lab	View Spectrum

NMR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted 1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm
Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB013630

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

131751650

PDB ID

Not Available

ChEBI ID

174514

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for 6Z-8-Hydroxygeraniol 8-O-glucoside (HMDB0035025)

MOL for HMDB0035025 (6Z-8-Hydroxygeraniol 8-O-glucoside)

3D MOL for HMDB0035025 (6Z-8-Hydroxygeraniol 8-O-glucoside)

3D SDF for HMDB0035025 (6Z-8-Hydroxygeraniol 8-O-glucoside)

3D-SDF for HMDB0035025 (6Z-8-Hydroxygeraniol 8-O-glucoside)

PDB for HMDB0035025 (6Z-8-Hydroxygeraniol 8-O-glucoside)

3D PDB for HMDB0035025 (6Z-8-Hydroxygeraniol 8-O-glucoside)

SMILES for HMDB0035025 (6Z-8-Hydroxygeraniol 8-O-glucoside)

INCHI for HMDB0035025 (6Z-8-Hydroxygeraniol 8-O-glucoside)

Structure for HMDB0035025 (6Z-8-Hydroxygeraniol 8-O-glucoside)

3D Structure for HMDB0035025 (6Z-8-Hydroxygeraniol 8-O-glucoside)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra

NMR Spectra