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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 20:15:03 UTC
Update Date2022-03-07 02:54:27 UTC
HMDB IDHMDB0035294
Secondary Accession Numbers
  • HMDB35294
Metabolite Identification
Common NameGanoderic acid Mk
DescriptionGanoderic acid Mk, also known as ganoderate MK, belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. Ganoderic acid Mk is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563862695
Synonyms
ValueSource
Ganoderate MKGenerator
3a,22X-Diacetoxy-15a-hydroxylanosta-7,9(11),24-trien-26-Oic acidHMDB
(2E)-5-(Acetyloxy)-6-[5-(acetyloxy)-12-hydroxy-2,6,6,11,15-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-1(17),9-dien-14-yl]-2-methylhept-2-enoateGenerator
Chemical FormulaC34H50O7
Average Molecular Weight570.7566
Monoisotopic Molecular Weight570.355653954
IUPAC Name(2E)-5-(acetyloxy)-6-[5-(acetyloxy)-12-hydroxy-2,6,6,11,15-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-1(17),9-dien-14-yl]-2-methylhept-2-enoic acid
Traditional Name(2E)-5-(acetyloxy)-6-[5-(acetyloxy)-12-hydroxy-2,6,6,11,15-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-1(17),9-dien-14-yl]-2-methylhept-2-enoic acid
CAS Registry NumberNot Available
SMILES
CC(C(C\C=C(/C)C(O)=O)OC(C)=O)C1CC(O)C2(C)C3=CCC4C(C)(C)C(CCC4(C)C3=CCC12C)OC(C)=O
InChI Identifier
InChI=1S/C34H50O7/c1-19(30(38)39)10-12-26(40-21(3)35)20(2)25-18-28(37)34(9)24-11-13-27-31(5,6)29(41-22(4)36)15-16-32(27,7)23(24)14-17-33(25,34)8/h10-11,14,20,25-29,37H,12-13,15-18H2,1-9H3,(H,38,39)/b19-10+
InChI KeyBCZACVDBVIYNMZ-VXLYETTFSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTriterpenoids
Direct ParentTriterpenoids
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0013 g/LALOGPS
logP6.28ALOGPS
logP4.88ChemAxon
logS-5.6ALOGPS
pKa (Strongest Acidic)4.45ChemAxon
pKa (Strongest Basic)-0.44ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area110.13 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity158.79 m³·mol⁻¹ChemAxon
Polarizability64.75 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+234.18931661259
DarkChem[M-H]-227.58331661259
DeepCCS[M-2H]-260.10630932474
DeepCCS[M+Na]+235.46930932474
AllCCS[M+H]+236.832859911
AllCCS[M+H-H2O]+235.632859911
AllCCS[M+NH4]+237.932859911
AllCCS[M+Na]+238.232859911
AllCCS[M-H]-233.432859911
AllCCS[M+Na-2H]-237.032859911
AllCCS[M+HCOO]-241.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Ganoderic acid MkCC(C(C\C=C(/C)C(O)=O)OC(C)=O)C1CC(O)C2(C)C3=CCC4C(C)(C)C(CCC4(C)C3=CCC12C)OC(C)=O5598.4Standard polar33892256
Ganoderic acid MkCC(C(C\C=C(/C)C(O)=O)OC(C)=O)C1CC(O)C2(C)C3=CCC4C(C)(C)C(CCC4(C)C3=CCC12C)OC(C)=O3574.2Standard non polar33892256
Ganoderic acid MkCC(C(C\C=C(/C)C(O)=O)OC(C)=O)C1CC(O)C2(C)C3=CCC4C(C)(C)C(CCC4(C)C3=CCC12C)OC(C)=O4122.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Ganoderic acid Mk,1TMS,isomer #1CC(=O)OC(C/C=C(\C)C(=O)O[Si](C)(C)C)C(C)C1CC(O)C2(C)C3=CCC4C(C)(CCC(OC(C)=O)C4(C)C)C3=CCC12C3915.7Semi standard non polar33892256
Ganoderic acid Mk,1TMS,isomer #2CC(=O)OC(C/C=C(\C)C(=O)O)C(C)C1CC(O[Si](C)(C)C)C2(C)C3=CCC4C(C)(CCC(OC(C)=O)C4(C)C)C3=CCC12C3961.2Semi standard non polar33892256
Ganoderic acid Mk,2TMS,isomer #1CC(=O)OC(C/C=C(\C)C(=O)O[Si](C)(C)C)C(C)C1CC(O[Si](C)(C)C)C2(C)C3=CCC4C(C)(CCC(OC(C)=O)C4(C)C)C3=CCC12C3795.3Semi standard non polar33892256
Ganoderic acid Mk,1TBDMS,isomer #1CC(=O)OC(C/C=C(\C)C(=O)O[Si](C)(C)C(C)(C)C)C(C)C1CC(O)C2(C)C3=CCC4C(C)(CCC(OC(C)=O)C4(C)C)C3=CCC12C4161.1Semi standard non polar33892256
Ganoderic acid Mk,1TBDMS,isomer #2CC(=O)OC(C/C=C(\C)C(=O)O)C(C)C1CC(O[Si](C)(C)C(C)(C)C)C2(C)C3=CCC4C(C)(CCC(OC(C)=O)C4(C)C)C3=CCC12C4206.7Semi standard non polar33892256
Ganoderic acid Mk,2TBDMS,isomer #1CC(=O)OC(C/C=C(\C)C(=O)O[Si](C)(C)C(C)(C)C)C(C)C1CC(O[Si](C)(C)C(C)(C)C)C2(C)C3=CCC4C(C)(CCC(OC(C)=O)C4(C)C)C3=CCC12C4287.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid Mk GC-MS (Non-derivatized) - 70eV, Positivesplash10-06vi-1003290000-5bfffb44d0deb51949642017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid Mk GC-MS (1 TMS) - 70eV, Positivesplash10-00c1-2014093000-fceec1eb3a97423a8b5a2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid Mk GC-MS ("Ganoderic acid Mk,1TMS,#1" TMS) - 70eV, PositiveNot Available2021-10-14Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid Mk GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid Mk GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid Mk GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid Mk GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid Mk GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 10V, Positive-QTOFsplash10-0wb9-0000190000-67292530320970b7d80a2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 20V, Positive-QTOFsplash10-03fu-0000970000-ba3e0d3a14e88d3055d52016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 40V, Positive-QTOFsplash10-0159-0100920000-7d83d365438511449e1b2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 10V, Negative-QTOFsplash10-0690-1000090000-bcabba3a2baecf16b4ca2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 20V, Negative-QTOFsplash10-0a6r-2000390000-adcd41e2608b8b58d0272016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 40V, Negative-QTOFsplash10-053u-7001940000-f65c8473b83417242f132016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 10V, Negative-QTOFsplash10-0a4i-9000250000-f62cdd0136f5836e51ae2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 20V, Negative-QTOFsplash10-0a4i-9001110000-c74df55613bafa20ca6c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 40V, Negative-QTOFsplash10-0a4l-9301100000-c06aa07855e654c8627a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 10V, Positive-QTOFsplash10-0ikl-0305940000-b0b279812f3492cda5692021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 20V, Positive-QTOFsplash10-014i-0205920000-7da527a9d1e7449733852021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid Mk 40V, Positive-QTOFsplash10-0h6u-5904000000-1c1d6dacab27f5dfbf372021-09-23Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB013960
KNApSAcK IDC00035103
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound13916707
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.