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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 23:15:00 UTC
Update Date2022-03-07 02:55:35 UTC
HMDB IDHMDB0037979
Secondary Accession Numbers
  • HMDB37979
Metabolite Identification
Common NameCyanidin 3-(disinapoylsophoroside) 5-glucoside
DescriptionCyanidin 3-(disinapoylsophoroside) 5-glucoside, also known as 3,3',4',5,7-pentahydroxyflavylium(1+) or 3-O-(di-O-sinapoylsophoroside), 5-O-b-D-glucopyranoside, belongs to the class of organic compounds known as anthocyanidin 3-o-6-p-coumaroyl glycosides. These are anthocyanidin 3-O-glycosides where the carbohydrate moiety is esterified at the C6 position with a p-coumaric acid. P-coumaric acid is an organic derivative of cinnamic acid, that carries a hydroxyl group at the 4-position of the benzene ring. Cyanidin 3-(disinapoylsophoroside) 5-glucoside is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, cyanidin 3-(disinapoylsophoroside) 5-glucoside has been detected, but not quantified in, brassicas and cauliflowers. This could make cyanidin 3-(disinapoylsophoroside) 5-glucoside a potential biomarker for the consumption of these foods.
Structure
Data?1563863119
Synonyms
ValueSource
3,3',4',5,7-Pentahydroxyflavylium(1+)HMDB
3-O-(Di-O-sinapoylsophoroside), 5-O-b-D-glucopyranosideHMDB
Cyanidin 3-(6'',6'''-disinapylsophoroside)-5-glucosideHMDB
Cyanidin 3-O-(di-O-sinapoylsophoroside) 5-glucosideHMDB
Cyanidin 3-O-(di-O-sinapoylsophoroside) 5-O-b-D-glucopyranosideHMDB
Chemical FormulaC55H61O29
Average Molecular Weight1186.0554
Monoisotopic Molecular Weight1185.32985099
IUPAC Name3-{[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-({[(2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}methyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({[(2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}methyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-7-hydroxy-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1λ⁴-chromen-1-ylium
Traditional Name3-{[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-({[(2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}methyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({[(2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}methyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-7-hydroxy-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1λ⁴-chromen-1-ylium
CAS Registry Number110202-93-2
SMILES
COC1=CC(\C=C\C(=O)OC[C@H]2O[C@@H](O[C@H]3[C@@H](OC4=C([O+]=C5C=C(O)C=C(O[C@@H]6O[C@H](CO)[C@@H](O)[C@H](O)[C@H]6O)C5=C4)C4=CC(O)=C(O)C=C4)O[C@H](COC(=O)\C=C\C4=CC(OC)=C(O)C(OC)=C4)[C@@H](O)[C@@H]3O)[C@H](O)[C@@H](O)[C@@H]2O)=CC(OC)=C1O
InChI Identifier
InChI=1S/C55H60O29/c1-72-31-11-22(12-32(73-2)41(31)62)5-9-39(60)76-20-37-44(65)47(68)50(71)54(82-37)84-52-48(69)45(66)38(21-77-40(61)10-6-23-13-33(74-3)42(63)34(14-23)75-4)83-55(52)80-35-18-26-29(78-51(35)24-7-8-27(58)28(59)15-24)16-25(57)17-30(26)79-53-49(70)46(67)43(64)36(19-56)81-53/h5-18,36-38,43-50,52-56,64-71H,19-21H2,1-4H3,(H4-,57,58,59,60,61,62,63)/p+1/t36-,37-,38-,43-,44-,45-,46+,47+,48+,49-,50-,52-,53-,54+,55+/m1/s1
InChI KeyOMKHCRCKDGASQY-SYFUIQBDSA-O
Chemical Taxonomy
Description Belongs to the class of organic compounds known as anthocyanidin 3-o-6-p-coumaroyl glycosides. These are anthocyanidin 3-O-glycosides where the carbohydrate moiety is esterified at the C6 position with a p-coumaric acid. P-coumaric acid is an organic derivative of cinnamic acid, that carries a hydroxyl group at the 4-position of the benzene ring.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassFlavonoid glycosides
Direct ParentAnthocyanidin 3-O-6-p-coumaroyl glycosides
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.11 g/LALOGPS
logP2.51ALOGPS
logP1.42ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)6.65ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count26ChemAxon
Hydrogen Donor Count14ChemAxon
Polar Surface Area441.26 ŲChemAxon
Rotatable Bond Count22ChemAxon
Refractivity289.77 m³·mol⁻¹ChemAxon
Polarizability113.91 ųChemAxon
Number of Rings8ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+320.56330932474
DeepCCS[M-H]-318.84130932474
DeepCCS[M-2H]-352.87330932474
DeepCCS[M+Na]+326.7230932474
AllCCS[M+H]+316.032859911
AllCCS[M+H-H2O]+316.832859911
AllCCS[M+NH4]+315.132859911
AllCCS[M+Na]+314.932859911
AllCCS[M-H]-286.432859911
AllCCS[M+Na-2H]-291.932859911
AllCCS[M+HCOO]-297.732859911

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cyanidin 3-(disinapoylsophoroside) 5-glucoside 10V, Positive-QTOFsplash10-000i-0930000000-34964c31acb6bbf004772016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cyanidin 3-(disinapoylsophoroside) 5-glucoside 20V, Positive-QTOFsplash10-0f79-1940000000-0e6b37b08e8aab6511372016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cyanidin 3-(disinapoylsophoroside) 5-glucoside 40V, Positive-QTOFsplash10-0ika-4910000000-e82271ffeea93e3fbea32016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cyanidin 3-(disinapoylsophoroside) 5-glucoside 10V, Negative-QTOFsplash10-001i-1910000000-42947d350db3fe9be0da2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cyanidin 3-(disinapoylsophoroside) 5-glucoside 20V, Negative-QTOFsplash10-0ue9-3940000001-4f8f3e8a58e0fe302c612016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cyanidin 3-(disinapoylsophoroside) 5-glucoside 40V, Negative-QTOFsplash10-052f-9200000000-fe2afa2c75c32a7fc0b62016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cyanidin 3-(disinapoylsophoroside) 5-glucoside 10V, Positive-QTOFsplash10-05n0-2920000000-fd7abdc801999cf69ed32021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cyanidin 3-(disinapoylsophoroside) 5-glucoside 20V, Positive-QTOFsplash10-0ay1-9841006343-a91239ff749ac086553e2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Cyanidin 3-(disinapoylsophoroside) 5-glucoside 40V, Positive-QTOFsplash10-0ky0-0790000022-6f3644073ab34b90fab42021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB017164
KNApSAcK IDC00006854
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131752261
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .