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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-03-20 21:10:55 UTC
Update Date2023-02-21 17:29:38 UTC
HMDB IDHMDB0059932
Secondary Accession Numbers
  • HMDB59932
Metabolite Identification
Common Name3-(Carboxymethyl)-3-hydroxypentanedioic acid
Description3-(Carboxymethyl)-3-hydroxypentanedioic acid belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups. 3-(Carboxymethyl)-3-hydroxypentanedioic acid is an extremely weak basic (essentially neutral) compound (based on its pKa). These are organic compounds containing three carboxylic acid groups (or salt/ester derivatives thereof).
Structure
Data?1677000578
Synonyms
ValueSource
3-(Carboxymethyl)-3-hydroxypentanedioateGenerator
Chemical FormulaC7H10O7
Average Molecular Weight206.1501
Monoisotopic Molecular Weight206.042652674
IUPAC Name3-(carboxymethyl)-3-hydroxypentanedioic acid
Traditional Name3-(carboxymethyl)-3-hydroxypentanedioic acid
CAS Registry NumberNot Available
SMILES
OC(=O)CC(O)(CC(O)=O)CC(O)=O
InChI Identifier
InChI=1S/C7H10O7/c8-4(9)1-7(14,2-5(10)11)3-6(12)13/h14H,1-3H2,(H,8,9)(H,10,11)(H,12,13)
InChI KeyCQOIYSASVHVTBU-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassTricarboxylic acids and derivatives
Direct ParentTricarboxylic acids and derivatives
Alternative Parents
Substituents
  • Tricarboxylic acid or derivatives
  • Tertiary alcohol
  • Carboxylic acid
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility197 g/LALOGPS
logP-1.6ALOGPS
logP-1.4ChemAxon
logS-0.02ALOGPS
pKa (Strongest Acidic)3.2ChemAxon
pKa (Strongest Basic)-3.3ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area132.13 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity40.17 m³·mol⁻¹ChemAxon
Polarizability17.34 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+146.07631661259
DarkChem[M-H]-140.44431661259
DeepCCS[M+H]+137.44830932474
DeepCCS[M-H]-133.61930932474
DeepCCS[M-2H]-171.2930932474
DeepCCS[M+Na]+146.82930932474
AllCCS[M+H]+144.232859911
AllCCS[M+H-H2O]+140.732859911
AllCCS[M+NH4]+147.632859911
AllCCS[M+Na]+148.532859911
AllCCS[M-H]-137.332859911
AllCCS[M+Na-2H]-138.332859911
AllCCS[M+HCOO]-139.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
3-(Carboxymethyl)-3-hydroxypentanedioic acidOC(=O)CC(O)(CC(O)=O)CC(O)=O3024.5Standard polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acidOC(=O)CC(O)(CC(O)=O)CC(O)=O1310.3Standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acidOC(=O)CC(O)(CC(O)=O)CC(O)=O1856.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
3-(Carboxymethyl)-3-hydroxypentanedioic acid,1TMS,isomer #1C[Si](C)(C)OC(=O)CC(O)(CC(=O)O)CC(=O)O1801.0Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,1TMS,isomer #2C[Si](C)(C)OC(CC(=O)O)(CC(=O)O)CC(=O)O1845.9Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,2TMS,isomer #1C[Si](C)(C)OC(=O)CC(CC(=O)O)(CC(=O)O)O[Si](C)(C)C1877.1Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,2TMS,isomer #2C[Si](C)(C)OC(=O)CC(O)(CC(=O)O)CC(=O)O[Si](C)(C)C1889.7Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)CC(CC(=O)O)(CC(=O)O[Si](C)(C)C)O[Si](C)(C)C1902.3Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,3TMS,isomer #2C[Si](C)(C)OC(=O)CC(O)(CC(=O)O[Si](C)(C)C)CC(=O)O[Si](C)(C)C1902.2Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,4TMS,isomer #1C[Si](C)(C)OC(=O)CC(CC(=O)O[Si](C)(C)C)(CC(=O)O[Si](C)(C)C)O[Si](C)(C)C1956.9Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC(O)(CC(=O)O)CC(=O)O2094.1Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(CC(=O)O)(CC(=O)O)CC(=O)O2082.4Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC(CC(=O)O)(CC(=O)O)O[Si](C)(C)C(C)(C)C2348.4Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)CC(O)(CC(=O)O)CC(=O)O[Si](C)(C)C(C)(C)C2385.6Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC(CC(=O)O)(CC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2591.4Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)CC(O)(CC(=O)O[Si](C)(C)C(C)(C)C)CC(=O)O[Si](C)(C)C(C)(C)C2592.9Semi standard non polar33892256
3-(Carboxymethyl)-3-hydroxypentanedioic acid,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC(CC(=O)O[Si](C)(C)C(C)(C)C)(CC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2772.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-052s-5900000000-9494222d1dcf58d5e4772017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid GC-MS (4 TMS) - 70eV, Positivesplash10-0200-9108700000-5c5ce29930b7d3e9fcec2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 10V, Positive-QTOFsplash10-000i-0910000000-8d7e43dd4b65299b6ca02017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 20V, Positive-QTOFsplash10-007c-0900000000-1880c0ffee62454d06ee2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 40V, Positive-QTOFsplash10-004l-1900000000-71d0aaa051e9b30c52e32017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 10V, Negative-QTOFsplash10-0bt9-0950000000-0a8dd2e4f1d0561d38082017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 20V, Negative-QTOFsplash10-0a4u-1920000000-901e1ea0e7f104f0c4ed2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 40V, Negative-QTOFsplash10-0a4l-6900000000-622a120283c41bde9c122017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 10V, Positive-QTOFsplash10-0a4s-0930000000-98472145ced83d293dfc2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 20V, Positive-QTOFsplash10-0006-9000000000-6bbb147570d091a891082021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 40V, Positive-QTOFsplash10-0w4i-4900000000-4b2a3493803907b9fc182021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 10V, Negative-QTOFsplash10-0nmu-0910000000-cca1e2bf35492ffb49672021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 20V, Negative-QTOFsplash10-0fr6-0900000000-789d7028d78521bbd5292021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(Carboxymethyl)-3-hydroxypentanedioic acid 40V, Negative-QTOFsplash10-0pbc-6900000000-7699e543a43e159a44132021-10-12Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound22471
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available