Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2014-04-11 22:17:08 UTC
Update Date2021-09-14 14:59:01 UTC
HMDB IDHMDB0061658
Secondary Accession Numbers
  • HMDB61658
Metabolite Identification
Common Name3-Hydroxyhexadecanoic acid
Description(S)-3-hydroxypalmitic acid, also known as (S)-beta-hydroxypalmitate, belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms (S)-3-hydroxypalmitic acid is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.
Structure
Data?1571929409
Synonyms
ValueSource
(S)-beta-Hydroxypalmitic acidChEBI
(S)-b-HydroxypalmitateGenerator
(S)-b-Hydroxypalmitic acidGenerator
(S)-beta-HydroxypalmitateGenerator
(S)-Β-hydroxypalmitateGenerator
(S)-Β-hydroxypalmitic acidGenerator
(S)-3-HydroxypalmitateGenerator
(3RS)-3-HydroxyhexadecanoateHMDB
(3RS)-3-Hydroxyhexadecanoic acidHMDB
(3S)-3-HydroxyhexadecanoateHMDB
(3S)-3-Hydroxyhexadecanoic acidHMDB
3-HydroxyhexadecanoateHMDB
3-Hydroxyhexadecanoic acidHMDB
3-HydroxypalmitateHMDB
3-Hydroxypalmitic acidHMDB
C16:0 3-OHHMDB
DL-3-HydroxyhexadecanoateHMDB
DL-3-Hydroxyhexadecanoic acidHMDB
DL-3-HydroxypalmitateHMDB
DL-3-Hydroxypalmitic acidHMDB
FA(16:0(3-OH))HMDB
FA(16:0(3S-OH))HMDB
beta-HydroxyhexadecanoateHMDB
beta-Hydroxyhexadecanoic acidHMDB
beta-HydroxypalmitateHMDB
beta-Hydroxypalmitic acidHMDB
β-HydroxyhexadecanoateHMDB
β-Hydroxyhexadecanoic acidHMDB
β-HydroxypalmitateHMDB
β-Hydroxypalmitic acidHMDB
Chemical FormulaC16H32O3
Average Molecular Weight272.429
Monoisotopic Molecular Weight272.23514489
IUPAC Name(3S)-3-hydroxyhexadecanoic acid
Traditional Name(S)-3-hydroxypalmitic acid
CAS Registry Number83780-74-9
SMILES
CCCCCCCCCCCCC[C@H](O)CC(O)=O
InChI Identifier
InChI=1S/C16H32O3/c1-2-3-4-5-6-7-8-9-10-11-12-13-15(17)14-16(18)19/h15,17H,2-14H2,1H3,(H,18,19)/t15-/m0/s1
InChI KeyCBWALJHXHCJYTE-HNNXBMFYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentLong-chain fatty acids
Alternative Parents
Substituents
  • Long-chain fatty acid
  • Hydroxy fatty acid
  • Beta-hydroxy acid
  • Hydroxy acid
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0056 g/LALOGPS
logP5.75ALOGPS
logP5.03ChemAxon
logS-4.7ALOGPS
pKa (Strongest Acidic)4.67ChemAxon
pKa (Strongest Basic)-2.8ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area57.53 ŲChemAxon
Rotatable Bond Count14ChemAxon
Refractivity78.6 m³·mol⁻¹ChemAxon
Polarizability34.88 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+172.63330932474
DeepCCS[M-H]-168.61330932474
DeepCCS[M-2H]-205.64930932474
DeepCCS[M+Na]+181.54230932474
AllCCS[M+H]+175.932859911
AllCCS[M+H-H2O]+172.832859911
AllCCS[M+NH4]+178.732859911
AllCCS[M+Na]+179.632859911
AllCCS[M-H]-173.332859911
AllCCS[M+Na-2H]-174.432859911
AllCCS[M+HCOO]-175.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
3-Hydroxyhexadecanoic acidCCCCCCCCCCCCC[C@H](O)CC(O)=O3237.6Standard polar33892256
3-Hydroxyhexadecanoic acidCCCCCCCCCCCCC[C@H](O)CC(O)=O2044.4Standard non polar33892256
3-Hydroxyhexadecanoic acidCCCCCCCCCCCCC[C@H](O)CC(O)=O2178.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
3-Hydroxyhexadecanoic acid,1TMS,isomer #1CCCCCCCCCCCCC[C@@H](CC(=O)O)O[Si](C)(C)C2181.6Semi standard non polar33892256
3-Hydroxyhexadecanoic acid,1TMS,isomer #2CCCCCCCCCCCCC[C@H](O)CC(=O)O[Si](C)(C)C2161.4Semi standard non polar33892256
3-Hydroxyhexadecanoic acid,2TMS,isomer #1CCCCCCCCCCCCC[C@@H](CC(=O)O[Si](C)(C)C)O[Si](C)(C)C2249.9Semi standard non polar33892256
3-Hydroxyhexadecanoic acid,1TBDMS,isomer #1CCCCCCCCCCCCC[C@@H](CC(=O)O)O[Si](C)(C)C(C)(C)C2426.9Semi standard non polar33892256
3-Hydroxyhexadecanoic acid,1TBDMS,isomer #2CCCCCCCCCCCCC[C@H](O)CC(=O)O[Si](C)(C)C(C)(C)C2413.1Semi standard non polar33892256
3-Hydroxyhexadecanoic acid,2TBDMS,isomer #1CCCCCCCCCCCCC[C@@H](CC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2717.7Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - 3-Hydroxyhexadecanoic acid GC-MS (2 TMS)splash10-001i-4940000000-fece8d1d85c8077f5cbe2019-10-24HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-Hydroxyhexadecanoic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - 3-Hydroxyhexadecanoic acid ESI-TOF 10V, Negative-QTOFsplash10-00di-0090000000-c4f61f86f8bc38c456a72019-10-24HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Hydroxyhexadecanoic acid 10V, Negative-QTOFsplash10-05fr-7090000000-e8d2f54d26a4035d475f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Hydroxyhexadecanoic acid 20V, Negative-QTOFsplash10-0a4i-9000000000-892da1ca30be239efc1b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Hydroxyhexadecanoic acid 40V, Negative-QTOFsplash10-0006-9000000000-627566fd3e62dca9f83f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Hydroxyhexadecanoic acid 10V, Positive-QTOFsplash10-00di-3190000000-df5736262a67f3445a1a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Hydroxyhexadecanoic acid 20V, Positive-QTOFsplash10-0abi-9210000000-397dd878d270127fa3c22021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Hydroxyhexadecanoic acid 40V, Positive-QTOFsplash10-0a4l-9000000000-02809ff94eb6d545758f2021-09-22Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10989404
PDB IDNot Available
ChEBI ID37250
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.
  6. The AOCS Lipid Library [Link]