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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-03-16 03:42:24 UTC
Update Date2022-03-07 03:17:52 UTC
HMDB IDHMDB0062304
Secondary Accession Numbers
  • HMDB62304
Metabolite Identification
Common Name1-(11Z-docosenoyl)-glycero-3-phosphate
DescriptionPA(22:1(11z)/0:0)is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(22:1(11z)/0:0), in particular, consists of two 11Z-docosenoyl chain at positions C-1 and C2. The oleic acid moiety is derived from vegetable oils, especially olive and canola oil, while the oleic acid moiety is derived from vegetable oils, especially olive and canola oil. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids.
Structure
Data?1563866293
Synonyms
ValueSource
1-(11Z-Docosenoyl)-glycero-3-phosphoric acidGenerator
Chemical FormulaC25H49O7P
Average Molecular Weight492.634
Monoisotopic Molecular Weight492.321590916
IUPAC Name[(2R)-3-[(11Z)-docos-11-enoyloxy]-2-hydroxypropoxy]phosphonic acid
Traditional Name(2R)-3-[(11Z)-docos-11-enoyloxy]-2-hydroxypropoxyphosphonic acid
CAS Registry NumberNot Available
SMILES
[H]\C(CCCCCCCCCC)=C(/[H])CCCCCCCCCC(=O)OC[C@@]([H])(O)COP(O)(O)=O
InChI Identifier
InChI=1S/C25H49O7P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-25(27)31-22-24(26)23-32-33(28,29)30/h11-12,24,26H,2-10,13-23H2,1H3,(H2,28,29,30)/b12-11-/t24-/m1/s1
InChI KeySNGZFCPKZNNZFT-FJIRUFBNSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 1-acylglycerol-3-phosphates. These are lysophosphatidic acids where the glycerol is esterified with a fatty acid at O-1 position.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphates
Direct Parent1-acylglycerol-3-phosphates
Alternative Parents
Substituents
  • 1-acylglycerol-3-phosphate
  • Fatty acid ester
  • Monoalkyl phosphate
  • Fatty acyl
  • Alkyl phosphate
  • Phosphoric acid ester
  • Organic phosphoric acid derivative
  • Carboxylic acid ester
  • Secondary alcohol
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Carbonyl group
  • Alcohol
  • Organooxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility0.00063 g/lALOGPS
LogP6.36ALOGPS
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP6.36ALOGPS
logP7.26ChemAxon
logS-5.9ALOGPS
pKa (Strongest Acidic)1.51ChemAxon
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area113.29 ŲChemAxon
Rotatable Bond Count25ChemAxon
Refractivity133.7 m³·mol⁻¹ChemAxon
Polarizability58.35 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+225.75831661259
DarkChem[M-H]-226.74831661259
DeepCCS[M+H]+231.62830932474
DeepCCS[M-H]-228.17630932474
DeepCCS[M-2H]-264.1230932474
DeepCCS[M+Na]+240.41130932474
AllCCS[M+H]+228.632859911
AllCCS[M+H-H2O]+227.032859911
AllCCS[M+NH4]+230.132859911
AllCCS[M+Na]+230.532859911
AllCCS[M-H]-221.932859911
AllCCS[M+Na-2H]-225.532859911
AllCCS[M+HCOO]-229.832859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.9.84 minutes32390414
Predicted by Siyang on May 30, 202218.0244 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.55 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid3242.3 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid234.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid234.8 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid175.9 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid635.7 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid906.9 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid810.7 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)414.1 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1892.8 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid711.8 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1631.8 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid721.7 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid478.8 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate366.6 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA364.0 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.4 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1-(11Z-docosenoyl)-glycero-3-phosphate[H]\C(CCCCCCCCCC)=C(/[H])CCCCCCCCCC(=O)OC[C@@]([H])(O)COP(O)(O)=O3942.3Standard polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate[H]\C(CCCCCCCCCC)=C(/[H])CCCCCCCCCC(=O)OC[C@@]([H])(O)COP(O)(O)=O3224.8Standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate[H]\C(CCCCCCCCCC)=C(/[H])CCCCCCCCCC(=O)OC[C@@]([H])(O)COP(O)(O)=O3689.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
1-(11Z-docosenoyl)-glycero-3-phosphate,1TMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)O)O[Si](C)(C)C3702.5Semi standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,1TMS,isomer #2CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O)O[Si](C)(C)C3696.6Semi standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C3661.5Semi standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C3390.1Standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C4280.7Standard polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TMS,isomer #2CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C3655.4Semi standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TMS,isomer #2CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C3409.4Standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TMS,isomer #2CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C3959.5Standard polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,3TMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3632.4Semi standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,3TMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3403.7Standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,3TMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3695.5Standard polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,1TBDMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)O)O[Si](C)(C)C(C)(C)C3953.5Semi standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,1TBDMS,isomer #2CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O)O[Si](C)(C)C(C)(C)C3918.6Semi standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TBDMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4137.4Semi standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TBDMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3664.1Standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TBDMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4288.0Standard polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TBDMS,isomer #2CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4112.0Semi standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TBDMS,isomer #2CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3654.3Standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,2TBDMS,isomer #2CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@@H](O)COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4073.7Standard polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,3TBDMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4328.2Semi standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,3TBDMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3763.1Standard non polar33892256
1-(11Z-docosenoyl)-glycero-3-phosphate,3TBDMS,isomer #1CCCCCCCCCC/C=C\CCCCCCCCCC(=O)OC[C@H](COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3864.5Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 1-(11Z-docosenoyl)-glycero-3-phosphate GC-MS (1 TMS) - 70eV, Positivesplash10-01vk-9431000000-c517bc2ed373431b01592017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-(11Z-docosenoyl)-glycero-3-phosphate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-(11Z-docosenoyl)-glycero-3-phosphate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(11Z-docosenoyl)-glycero-3-phosphate 10V, Positive-QTOFsplash10-0006-0000900000-4c1c06ee7eb7a46a79ed2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(11Z-docosenoyl)-glycero-3-phosphate 20V, Positive-QTOFsplash10-0006-0000900000-4c1c06ee7eb7a46a79ed2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(11Z-docosenoyl)-glycero-3-phosphate 40V, Positive-QTOFsplash10-00di-0905700000-bcf9678f2804f9abc1fc2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(11Z-docosenoyl)-glycero-3-phosphate 10V, Negative-QTOFsplash10-0006-0000900000-84ccfe6cab2714cae7932021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(11Z-docosenoyl)-glycero-3-phosphate 20V, Negative-QTOFsplash10-0006-0000900000-84ccfe6cab2714cae7932021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(11Z-docosenoyl)-glycero-3-phosphate 40V, Negative-QTOFsplash10-0udu-2905600000-b8513af04434a988bb2e2021-09-23Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound52929762
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Moritz A, De Graan PN, Gispen WH, Wirtz KW: Phosphatidic acid is a specific activator of phosphatidylinositol-4-phosphate kinase. J Biol Chem. 1992 Apr 15;267(11):7207-10. [PubMed:1313792 ]
  2. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  3. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  4. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  5. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  6. Divecha N, Irvine RF: Phospholipid signaling. Cell. 1995 Jan 27;80(2):269-78. [PubMed:7834746 ]
  7. Moolenaar WH, Kruijer W, Tilly BC, Verlaan I, Bierman AJ, de Laat SW: Growth factor-like action of phosphatidic acid. Nature. 1986 Sep 11-17;323(6084):171-3. [PubMed:3748188 ]
  8. Yang CY, Frohman MA: Mitochondria: signaling with phosphatidic acid. Int J Biochem Cell Biol. 2012 Aug;44(8):1346-50. doi: 10.1016/j.biocel.2012.05.006. Epub 2012 May 15. [PubMed:22609101 ]
  9. Cevc, Gregor (1993). Phospholipids Handbook. Marcel Dekker.
  10. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.