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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2017-03-21 06:13:25 UTC

Update Date

2022-03-07 03:17:54 UTC

HMDB ID

HMDB0062392

Secondary Accession Numbers

HMDB62392

Metabolite Identification

Common Name

4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol

Description

4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol belongs to the class of organic compounds known as cholesterols and derivatives. Cholesterols and derivatives are compounds containing a 3-hydroxylated cholestane core. Thus, 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol is considered to be a sterol lipid molecule. 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1572001241622292D          

 36 39  0  0  0  0            999 V2000
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M  END

HMDB0062392
     RDKit          3D
4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol
 76 79  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1572001241622292D          

 36 39  0  0  0  0            999 V2000
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 20  9  1  0  0  0  0
 21 17  1  1  0  0  0
 22 11  1  0  0  0  0
 22 19  1  6  0  0  0
 23 12  1  0  0  0  0
 23 20  1  0  0  0  0
 24 10  1  0  0  0  0
 24 21  1  0  0  0  0
 25 13  1  0  0  0  0
 25 20  2  0  0  0  0
 26 14  1  0  0  0  0
 26 21  1  0  0  0  0
 27  4  1  6  0  0  0
 27 15  1  0  0  0  0
 27 22  1  0  0  0  0
 27 23  1  0  0  0  0
 28  5  1  6  0  0  0
 28 16  1  0  0  0  0
 28 24  1  0  0  0  0
 28 25  1  0  0  0  0
 29 17  1  0  0  0  0
 26 30  1  6  0  0  0
 19 31  1  6  0  0  0
 21 32  1  6  0  0  0
 22 33  1  1  0  0  0
 23 34  1  1  0  0  0
 24 35  1  1  0  0  0
 26 36  1  1  0  0  0
M  END
> <DATABASE_ID>
HMDB0062392

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@](C)(CCC=C(C)C)[C@@]1([H])CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@]([H])(O)[C@@]([H])(CO)[C@]1([H])CC3

> <INCHI_IDENTIFIER>
InChI=1S/C28H46O2/c1-18(2)7-6-8-19(3)22-11-12-23-20-9-10-24-21(17-29)26(30)14-16-28(24,5)25(20)13-15-27(22,23)4/h7,19,21-24,26,29-30H,6,8-17H2,1-5H3/t19-,21+,22-,23+,24+,26+,27-,28+/m1/s1

> <INCHI_KEY>
ORZKEIGPXNMCHC-NUESBDPTSA-N

> <FORMULA>
C28H46O2

> <MOLECULAR_WEIGHT>
414.674

> <EXACT_MASS>
414.349780721

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
52.65580444370327

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,5S,6R,7S,11R,14R,15R)-6-(hydroxymethyl)-2,15-dimethyl-14-[(2R)-6-methylhept-5-en-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-5-ol

> <ALOGPS_LOGP>
5.55

> <JCHEM_LOGP>
5.633502661333333

> <ALOGPS_LOGS>
-5.13

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.59369511512546

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.750839275122246

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6325899108555157

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
127.50139999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.05e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,5S,6R,7S,11R,14R,15R)-6-(hydroxymethyl)-2,15-dimethyl-14-[(2R)-6-methylhept-5-en-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-5-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0062392
     RDKit          3D
4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol
 76 79  0  0  0  0  0  0  0  0999 V2000
    7.9572    0.8797   -0.0585 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0083    0.4857    1.0273 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5100    0.0744    2.3454 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6776    0.5025    0.8112 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1785    0.9123   -0.5025 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4875   -0.0678   -1.3565 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2297   -0.7091   -0.8760 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5130   -1.4973    0.3639 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1517    0.3130   -0.5787 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8729    1.1236   -1.8536 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3860    1.3345   -1.9282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0603    1.0007   -0.5214 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4809    0.6623   -0.4379 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8543   -0.1639    0.5346 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8982   -0.6793    1.5403 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5363   -0.6855    1.0973 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7947   -0.2584   -0.2974 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3842   -1.2915   -1.3269 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2757   -0.6197    0.6715 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4086   -1.9531   -0.0107 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7242   -0.6965    2.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0983   -1.3401    2.0825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0982   -0.6121    1.2623 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.9571   -1.5909    0.6977 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6003    0.2384    0.1542 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.2229    1.6339    0.3818 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8422    2.5406   -0.5852 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1454    0.4391    0.0329 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.7493    0.6155   -1.4244 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4054    1.2640   -1.4314 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8439    1.9629   -0.2498 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7717    0.2781   -0.9947 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9732    0.6387    0.2568 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7811    0.2353    3.1655 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7806   -1.0203    2.3913 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4398    0.6355    2.6180 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0497    0.2369    1.6357 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0416    1.3661   -1.1009 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4379    1.7835   -0.3720 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3849    0.3154   -2.4099 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2175   -0.9388   -1.5063 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9070   -1.4253   -1.6600 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1780   -1.0035    1.2798 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6164   -1.7141    0.4709 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9710   -2.4835    0.3202 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4359    0.9953    0.2278 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3831    2.0912   -1.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2245    0.5709   -2.7486 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1127    2.3751   -2.1603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0358    0.6073   -2.6570 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2754    1.7927    0.1582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1908   -1.7201    1.7842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0306   -0.0644    2.4550 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1062   -0.0215    1.7834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9617   -1.7213    1.2384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6697   -1.1262   -1.5499 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9862   -1.1499   -2.2723 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5537   -2.3176   -1.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7964   -2.0330   -0.9303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4630   -2.1398   -0.3400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1121   -2.7958    0.6467 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0864   -1.3142    2.7456 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8783    0.3421    2.4921 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0362   -2.4093    1.7781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4376   -1.3700    3.1430 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7707   -0.0300    1.9657 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5682   -1.9450    1.4174 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0537   -0.0836   -0.8238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3427    1.5522    0.3361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9843    1.9850    1.4224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3847    3.3538   -0.4336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8467    1.3997    0.5275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6407   -0.3929   -1.8752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4976    1.2286   -1.9134 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5396    2.3318   -1.1021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9341    1.2868   -2.4354 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  6
 14 19  1  0
 19 20  1  6
 19 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 26 27  1  0
 25 28  1  0
 28 29  1  0
 29 30  1  0
 17  9  1  0
 28 19  1  0
 17 12  1  0
 30 13  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  3 34  1  0
  3 35  1  0
  3 36  1  0
  4 37  1  0
  5 38  1  0
  5 39  1  0
  6 40  1  0
  6 41  1  0
  7 42  1  6
  8 43  1  0
  8 44  1  0
  8 45  1  0
  9 46  1  1
 10 47  1  0
 10 48  1  0
 11 49  1  0
 11 50  1  0
 12 51  1  1
 15 52  1  0
 15 53  1  0
 16 54  1  0
 16 55  1  0
 18 56  1  0
 18 57  1  0
 18 58  1  0
 20 59  1  0
 20 60  1  0
 20 61  1  0
 21 62  1  0
 21 63  1  0
 22 64  1  0
 22 65  1  0
 23 66  1  1
 24 67  1  0
 25 68  1  6
 26 69  1  0
 26 70  1  0
 27 71  1  0
 28 72  1  1
 29 73  1  0
 29 74  1  0
 30 75  1  0
 30 76  1  0
M  END

HEADER    PROTEIN                                 24-JAN-16   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JAN-16         0                                  
HETATM    1  C   UNK     0       9.023  -2.790   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.918  -4.427   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.976  -2.417   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.744  -1.211   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.952  -0.460   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.027  -1.996   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.553  -1.785   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.082  -0.780   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.490   3.343   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.006   3.614   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.039   1.704   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.765   2.569   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.436  -0.731   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -6.984   0.082   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.920  -1.002   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -5.468  -0.189   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -7.038   4.156   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.498  -3.001   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.556  -0.990   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.967   1.895   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -6.515   2.708   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.611   0.225   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.451   1.623   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -4.999   2.437   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -2.960   0.717   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -7.508   1.530   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.072   0.175   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -4.476   0.988   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -8.554   4.427   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      -9.023   1.802   0.000  0.00  0.00           O+0
HETATM   31  H   UNK     0       3.502  -2.206   0.000  0.00  0.00           H+0
HETATM   32  H   UNK     0      -5.522   3.885   0.000  0.00  0.00           H+0
HETATM   33  H   UNK     0       3.124   0.515   0.000  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.820   3.119   0.000  0.00  0.00           H+0
HETATM   35  H   UNK     0      -5.992   1.259   0.000  0.00  0.00           H+0
HETATM   36  H   UNK     0      -8.031   2.979   0.000  0.00  0.00           H+0
CONECT    1   18                                                            
CONECT    2   18                                                            
CONECT    3   19                                                            
CONECT    4   27                                                            
CONECT    5   28                                                            
CONECT    6    7    8                                                       
CONECT    7    6   18                                                       
CONECT    8    6   19                                                       
CONECT    9   10   20                                                       
CONECT   10    9   24                                                       
CONECT   11   12   22                                                       
CONECT   12   11   23                                                       
CONECT   13   15   25                                                       
CONECT   14   16   26                                                       
CONECT   15   13   27                                                       
CONECT   16   14   28                                                       
CONECT   17   21   29                                                       
CONECT   18    1    2    7                                                  
CONECT   19    3    8   22   31                                             
CONECT   20    9   23   25                                                  
CONECT   21   17   24   26   32                                             
CONECT   22   11   19   27   33                                             
CONECT   23   12   20   27   34                                             
CONECT   24   10   21   28   35                                             
CONECT   25   13   20   28                                                  
CONECT   26   14   21   30   36                                             
CONECT   27    4   15   22   23                                             
CONECT   28    5   16   24   25                                             
CONECT   29   17                                                            
CONECT   30   26                                                            
CONECT   31   19                                                            
CONECT   32   21                                                            
CONECT   33   22                                                            
CONECT   34   23                                                            
CONECT   35   24                                                            
CONECT   36   26                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   78    0
END

COMPND    HMDB0062392
HETATM    1  C1  UNL     1       7.957   0.880  -0.058  1.00  0.00           C  
HETATM    2  C2  UNL     1       7.008   0.486   1.027  1.00  0.00           C  
HETATM    3  C3  UNL     1       7.510   0.074   2.345  1.00  0.00           C  
HETATM    4  C4  UNL     1       5.678   0.502   0.811  1.00  0.00           C  
HETATM    5  C5  UNL     1       5.178   0.912  -0.503  1.00  0.00           C  
HETATM    6  C6  UNL     1       4.488  -0.068  -1.357  1.00  0.00           C  
HETATM    7  C7  UNL     1       3.230  -0.709  -0.876  1.00  0.00           C  
HETATM    8  C8  UNL     1       3.513  -1.497   0.364  1.00  0.00           C  
HETATM    9  C9  UNL     1       2.152   0.313  -0.579  1.00  0.00           C  
HETATM   10  C10 UNL     1       1.873   1.124  -1.854  1.00  0.00           C  
HETATM   11  C11 UNL     1       0.386   1.335  -1.928  1.00  0.00           C  
HETATM   12  C12 UNL     1      -0.060   1.001  -0.521  1.00  0.00           C  
HETATM   13  C13 UNL     1      -1.481   0.662  -0.438  1.00  0.00           C  
HETATM   14  C14 UNL     1      -1.854  -0.164   0.535  1.00  0.00           C  
HETATM   15  C15 UNL     1      -0.898  -0.679   1.540  1.00  0.00           C  
HETATM   16  C16 UNL     1       0.536  -0.685   1.097  1.00  0.00           C  
HETATM   17  C17 UNL     1       0.795  -0.258  -0.297  1.00  0.00           C  
HETATM   18  C18 UNL     1       0.384  -1.291  -1.327  1.00  0.00           C  
HETATM   19  C19 UNL     1      -3.276  -0.620   0.672  1.00  0.00           C  
HETATM   20  C20 UNL     1      -3.409  -1.953  -0.011  1.00  0.00           C  
HETATM   21  C21 UNL     1      -3.724  -0.696   2.115  1.00  0.00           C  
HETATM   22  C22 UNL     1      -5.098  -1.340   2.083  1.00  0.00           C  
HETATM   23  C23 UNL     1      -6.098  -0.612   1.262  1.00  0.00           C  
HETATM   24  O1  UNL     1      -6.957  -1.591   0.698  1.00  0.00           O  
HETATM   25  C24 UNL     1      -5.600   0.238   0.154  1.00  0.00           C  
HETATM   26  C25 UNL     1      -6.223   1.634   0.382  1.00  0.00           C  
HETATM   27  O2  UNL     1      -5.842   2.541  -0.585  1.00  0.00           O  
HETATM   28  C26 UNL     1      -4.145   0.439   0.033  1.00  0.00           C  
HETATM   29  C27 UNL     1      -3.749   0.615  -1.424  1.00  0.00           C  
HETATM   30  C28 UNL     1      -2.405   1.264  -1.431  1.00  0.00           C  
HETATM   31  H1  UNL     1       7.844   1.963  -0.250  1.00  0.00           H  
HETATM   32  H2  UNL     1       7.772   0.278  -0.995  1.00  0.00           H  
HETATM   33  H3  UNL     1       8.973   0.639   0.257  1.00  0.00           H  
HETATM   34  H4  UNL     1       6.781   0.235   3.166  1.00  0.00           H  
HETATM   35  H5  UNL     1       7.781  -1.020   2.391  1.00  0.00           H  
HETATM   36  H6  UNL     1       8.440   0.636   2.618  1.00  0.00           H  
HETATM   37  H7  UNL     1       5.050   0.237   1.636  1.00  0.00           H  
HETATM   38  H8  UNL     1       6.042   1.366  -1.101  1.00  0.00           H  
HETATM   39  H9  UNL     1       4.438   1.784  -0.372  1.00  0.00           H  
HETATM   40  H10 UNL     1       4.385   0.315  -2.410  1.00  0.00           H  
HETATM   41  H11 UNL     1       5.218  -0.939  -1.506  1.00  0.00           H  
HETATM   42  H12 UNL     1       2.907  -1.425  -1.660  1.00  0.00           H  
HETATM   43  H13 UNL     1       3.178  -1.004   1.280  1.00  0.00           H  
HETATM   44  H14 UNL     1       4.616  -1.714   0.471  1.00  0.00           H  
HETATM   45  H15 UNL     1       2.971  -2.483   0.320  1.00  0.00           H  
HETATM   46  H16 UNL     1       2.436   0.995   0.228  1.00  0.00           H  
HETATM   47  H17 UNL     1       2.383   2.091  -1.799  1.00  0.00           H  
HETATM   48  H18 UNL     1       2.224   0.571  -2.749  1.00  0.00           H  
HETATM   49  H19 UNL     1       0.113   2.375  -2.160  1.00  0.00           H  
HETATM   50  H20 UNL     1      -0.036   0.607  -2.657  1.00  0.00           H  
HETATM   51  H21 UNL     1       0.275   1.793   0.158  1.00  0.00           H  
HETATM   52  H22 UNL     1      -1.191  -1.720   1.784  1.00  0.00           H  
HETATM   53  H23 UNL     1      -1.031  -0.064   2.455  1.00  0.00           H  
HETATM   54  H24 UNL     1       1.106  -0.021   1.783  1.00  0.00           H  
HETATM   55  H25 UNL     1       0.962  -1.721   1.238  1.00  0.00           H  
HETATM   56  H26 UNL     1      -0.670  -1.126  -1.550  1.00  0.00           H  
HETATM   57  H27 UNL     1       0.986  -1.150  -2.272  1.00  0.00           H  
HETATM   58  H28 UNL     1       0.554  -2.318  -1.000  1.00  0.00           H  
HETATM   59  H29 UNL     1      -2.796  -2.033  -0.930  1.00  0.00           H  
HETATM   60  H30 UNL     1      -4.463  -2.140  -0.340  1.00  0.00           H  
HETATM   61  H31 UNL     1      -3.112  -2.796   0.647  1.00  0.00           H  
HETATM   62  H32 UNL     1      -3.086  -1.314   2.746  1.00  0.00           H  
HETATM   63  H33 UNL     1      -3.878   0.342   2.492  1.00  0.00           H  
HETATM   64  H34 UNL     1      -5.036  -2.409   1.778  1.00  0.00           H  
HETATM   65  H35 UNL     1      -5.438  -1.370   3.143  1.00  0.00           H  
HETATM   66  H36 UNL     1      -6.771  -0.030   1.966  1.00  0.00           H  
HETATM   67  H37 UNL     1      -7.568  -1.945   1.417  1.00  0.00           H  
HETATM   68  H38 UNL     1      -6.054  -0.084  -0.824  1.00  0.00           H  
HETATM   69  H39 UNL     1      -7.343   1.552   0.336  1.00  0.00           H  
HETATM   70  H40 UNL     1      -5.984   1.985   1.422  1.00  0.00           H  
HETATM   71  H41 UNL     1      -6.385   3.354  -0.434  1.00  0.00           H  
HETATM   72  H42 UNL     1      -3.847   1.400   0.528  1.00  0.00           H  
HETATM   73  H43 UNL     1      -3.641  -0.393  -1.875  1.00  0.00           H  
HETATM   74  H44 UNL     1      -4.498   1.229  -1.913  1.00  0.00           H  
HETATM   75  H45 UNL     1      -2.540   2.332  -1.102  1.00  0.00           H  
HETATM   76  H46 UNL     1      -1.934   1.287  -2.435  1.00  0.00           H  
CONECT    1    2   31   32   33
CONECT    2    3    4    4
CONECT    3   34   35   36
CONECT    4    5   37
CONECT    5    6   38   39
CONECT    6    7   40   41
CONECT    7    8    9   42
CONECT    8   43   44   45
CONECT    9   10   17   46
CONECT   10   11   47   48
CONECT   11   12   49   50
CONECT   12   13   17   51
CONECT   13   14   14   30
CONECT   14   15   19
CONECT   15   16   52   53
CONECT   16   17   54   55
CONECT   17   18
CONECT   18   56   57   58
CONECT   19   20   21   28
CONECT   20   59   60   61
CONECT   21   22   62   63
CONECT   22   23   64   65
CONECT   23   24   25   66
CONECT   24   67
CONECT   25   26   28   68
CONECT   26   27   69   70
CONECT   27   71
CONECT   28   29   72
CONECT   29   30   73   74
CONECT   30   75   76
END

HMDB0062392
     RDKit          3D
4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol
 76 79  0  0  0  0  0  0  0  0999 V2000
    7.9572    0.8797   -0.0585 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0083    0.4857    1.0273 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5100    0.0744    2.3454 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6776    0.5025    0.8112 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1785    0.9123   -0.5025 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4875   -0.0678   -1.3565 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2297   -0.7091   -0.8760 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5130   -1.4973    0.3639 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1517    0.3130   -0.5787 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8729    1.1236   -1.8536 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3860    1.3345   -1.9282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0603    1.0007   -0.5214 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4809    0.6623   -0.4379 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8543   -0.1639    0.5346 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8982   -0.6793    1.5403 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5363   -0.6855    1.0973 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7947   -0.2584   -0.2974 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3842   -1.2915   -1.3269 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2757   -0.6197    0.6715 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4086   -1.9531   -0.0107 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7242   -0.6965    2.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0983   -1.3401    2.0825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0982   -0.6121    1.2623 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.9571   -1.5909    0.6977 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6003    0.2384    0.1542 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.2229    1.6339    0.3818 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8422    2.5406   -0.5852 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1454    0.4391    0.0329 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.7493    0.6155   -1.4244 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4054    1.2640   -1.4314 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8439    1.9629   -0.2498 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7717    0.2781   -0.9947 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9732    0.6387    0.2568 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7811    0.2353    3.1655 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7806   -1.0203    2.3913 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4398    0.6355    2.6180 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0497    0.2369    1.6357 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0416    1.3661   -1.1009 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4379    1.7835   -0.3720 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3849    0.3154   -2.4099 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2175   -0.9388   -1.5063 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9070   -1.4253   -1.6600 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1780   -1.0035    1.2798 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6164   -1.7141    0.4709 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9710   -2.4835    0.3202 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4359    0.9953    0.2278 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3831    2.0912   -1.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2245    0.5709   -2.7486 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1127    2.3751   -2.1603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0358    0.6073   -2.6570 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2754    1.7927    0.1582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1908   -1.7201    1.7842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0306   -0.0644    2.4550 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1062   -0.0215    1.7834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9617   -1.7213    1.2384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6697   -1.1262   -1.5499 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9862   -1.1499   -2.2723 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5537   -2.3176   -1.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7964   -2.0330   -0.9303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4630   -2.1398   -0.3400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1121   -2.7958    0.6467 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0864   -1.3142    2.7456 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8783    0.3421    2.4921 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0362   -2.4093    1.7781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4376   -1.3700    3.1430 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7707   -0.0300    1.9657 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5682   -1.9450    1.4174 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0537   -0.0836   -0.8238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3427    1.5522    0.3361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9843    1.9850    1.4224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3847    3.3538   -0.4336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8467    1.3997    0.5275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6407   -0.3929   -1.8752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4976    1.2286   -1.9134 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5396    2.3318   -1.1021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9341    1.2868   -2.4354 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  6
 14 19  1  0
 19 20  1  6
 19 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 26 27  1  0
 25 28  1  0
 28 29  1  0
 29 30  1  0
 17  9  1  0
 28 19  1  0
 17 12  1  0
 30 13  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  3 34  1  0
  3 35  1  0
  3 36  1  0
  4 37  1  0
  5 38  1  0
  5 39  1  0
  6 40  1  0
  6 41  1  0
  7 42  1  6
  8 43  1  0
  8 44  1  0
  8 45  1  0
  9 46  1  1
 10 47  1  0
 10 48  1  0
 11 49  1  0
 11 50  1  0
 12 51  1  1
 15 52  1  0
 15 53  1  0
 16 54  1  0
 16 55  1  0
 18 56  1  0
 18 57  1  0
 18 58  1  0
 20 59  1  0
 20 60  1  0
 20 61  1  0
 21 62  1  0
 21 63  1  0
 22 64  1  0
 22 65  1  0
 23 66  1  1
 24 67  1  0
 25 68  1  6
 26 69  1  0
 26 70  1  0
 27 71  1  0
 28 72  1  1
 29 73  1  0
 29 74  1  0
 30 75  1  0
 30 76  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₂₈H₄₆O₂

Average Molecular Weight

414.674

Monoisotopic Molecular Weight

414.349780721

IUPAC Name

(2S,5S,6R,7S,11R,14R,15R)-6-(hydroxymethyl)-2,15-dimethyl-14-[(2R)-6-methylhept-5-en-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-5-ol

Traditional Name

(2S,5S,6R,7S,11R,14R,15R)-6-(hydroxymethyl)-2,15-dimethyl-14-[(2R)-6-methylhept-5-en-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-5-ol

CAS Registry Number

Not Available

SMILES

[H][C@@](C)(CCC=C(C)C)[C@@]1([H])CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@]([H])(O)[C@@]([H])(CO)[C@]1([H])CC3

InChI Identifier

InChI=1S/C28H46O2/c1-18(2)7-6-8-19(3)22-11-12-23-20-9-10-24-21(17-29)26(30)14-16-28(24,5)25(20)13-15-27(22,23)4/h7,19,21-24,26,29-30H,6,8-17H2,1-5H3/t19-,21+,22-,23+,24+,26+,27-,28+/m1/s1

InChI Key

ORZKEIGPXNMCHC-NUESBDPTSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cholesterols and derivatives. Cholesterols and derivatives are compounds containing a 3-hydroxylated cholestane core.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Cholestane steroids

Direct Parent

Cholesterols and derivatives

Alternative Parents

Substituents

Cholesterol-skeleton
3-beta-hydroxysteroid
Hydroxysteroid
3-hydroxysteroid
Cyclic alcohol
Secondary alcohol
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Cholesterol and derivatives (LMST01010234 )

Ontology

Not Available

Herbs and Spices (FooDB: FOOD00866)

Nut

Almond (FooDB: FOOD00148)
Brazil nut (FooDB: FOOD00024)
Cashew nut (FooDB: FOOD00011)
Chestnut (FooDB: FOOD00045)
Hazelnut (FooDB: FOOD00376)
Peanut (FooDB: FOOD00016)
Pecan nut (FooDB: FOOD00044)
Pine nut (FooDB: FOOD00138)
Pistachio (FooDB: FOOD00140)
Walnut (FooDB: FOOD00608)
Acorn (FooDB: FOOD00282)
Beech nut (FooDB: FOOD00299)
Butternut (FooDB: FOOD00316)
Chinese chestnut (FooDB: FOOD00331)
European chestnut (FooDB: FOOD00363)
Hickory nut (FooDB: FOOD00377)
Macadamia nut (FooDB: FOOD00525)
Mixed nuts (FooDB: FOOD00771)
Pili nut (FooDB: FOOD00432)
Colorado pinyon (FooDB: FOOD00433)
Black walnut (FooDB: FOOD00093)
Common walnut (FooDB: FOOD00094)
Japanese chestnut (FooDB: FOOD00385)
Common hazelnut (FooDB: FOOD00062)
Macadamia nut (M. tetraphylla) (FooDB: FOOD00225)
Japanese walnut (FooDB: FOOD00240)
Nuts (FooDB: FOOD00869)

Fruit

Pome

Drupe

Apricot (FooDB: FOOD00144)
Prunus (Cherry, Plum) (FooDB: FOOD00143)
Nectarine (FooDB: FOOD00229)
Peach (FooDB: FOOD00149)
European plum (FooDB: FOOD00147)
Sour cherry (FooDB: FOOD00146)
Sweet cherry (FooDB: FOOD00145)
Common chokecherry (FooDB: FOOD00562)
Peach (var.) (FooDB: FOOD00230)

Tropical fruit

Berry

Bilberry (FooDB: FOOD00193)
Rubus (Blackberry, Raspberry) (FooDB: FOOD00160)
Vaccinium (Blueberry, Cranberry, Huckleberry) (FooDB: FOOD00188)
Blackcurrant (FooDB: FOOD00155)
Redcurrant (FooDB: FOOD00156)
Elderberry (FooDB: FOOD00358)
Gooseberry (FooDB: FOOD00157)
Grape (FooDB: FOOD00369)
Lingonberry (FooDB: FOOD00194)
Loganberry (FooDB: FOOD00400)
Strawberry (FooDB: FOOD00083)
Boysenberry (FooDB: FOOD00542)
American cranberry (FooDB: FOOD00192)
Common grape (FooDB: FOOD00204)
Strawberry guava (FooDB: FOOD00482)
Black mulberry (FooDB: FOOD00117)
Red raspberry (FooDB: FOOD00162)
Muscadine grape (FooDB: FOOD00203)
Salmonberry (FooDB: FOOD00456)
Alaska blueberry (FooDB: FOOD00380)
Sea-buckthornberry (FooDB: FOOD00087)
Black elderberry (FooDB: FOOD00166)
Black crowberry (FooDB: FOOD00075)
Black huckleberry (FooDB: FOOD00084)
Mulberry (FooDB: FOOD00116)
Black chokeberry (FooDB: FOOD00136)
Cloudberry (FooDB: FOOD00161)
Black raspberry (FooDB: FOOD00163)
Rowanberry (FooDB: FOOD00176)
Lowbush blueberry (FooDB: FOOD00189)
Sparkleberry (FooDB: FOOD00190)
Highbush blueberry (FooDB: FOOD00191)
Arctic blackberry (FooDB: FOOD00207)
Bayberry (FooDB: FOOD00209)
Elliott's blueberry (FooDB: FOOD00210)
Canada blueberry (FooDB: FOOD00211)
Bog bilberry (FooDB: FOOD00212)
Buffalo currant (FooDB: FOOD00213)
European cranberry (FooDB: FOOD00217)
Deerberry (FooDB: FOOD00218)
Cascade huckleberry (FooDB: FOOD00220)
Oval-leaf huckleberry (FooDB: FOOD00221)
Evergreen huckleberry (FooDB: FOOD00222)
Red huckleberry (FooDB: FOOD00223)
Summer grape (FooDB: FOOD00227)
Fox grape (FooDB: FOOD00228)
Half-highbush blueberry (FooDB: FOOD00248)
Jostaberry (FooDB: FOOD00257)
Sweet rowanberry (FooDB: FOOD00265)
Skunk currant (FooDB: FOOD00267)
Squashberry (FooDB: FOOD00344)
Ohelo berry (FooDB: FOOD00419)
Chinese bayberry (FooDB: FOOD00852)
Saskatoon berry (FooDB: FOOD00884)
Nanking cherry (FooDB: FOOD00885)

Other fruit

Date (FooDB: FOOD00135)
Fig (FooDB: FOOD00081)
Jujube (FooDB: FOOD00388)

Citrus

Grapefruit (FooDB: FOOD00256)
Lemon (FooDB: FOOD00054)
Lime (FooDB: FOOD00053)
Sweet orange (FooDB: FOOD00057)
Mandarin orange (Clementine, Tangerine) (FooDB: FOOD00056)
Persian lime (FooDB: FOOD00543)
Pummelo (FooDB: FOOD00055)
Grapefruit/Pummelo hybrid (FooDB: FOOD00255)
Citrus (FooDB: FOOD00859)

Fruits (FooDB: FOOD00871)

Vegetable

Shoot vegetable

Fruit vegetable

Eggplant (FooDB: FOOD00174)
Avocado (FooDB: FOOD00130)
Groundcherry (FooDB: FOOD00371)
Olive (FooDB: FOOD00121)
Pepper (FooDB: FOOD00040)
Garden tomato (FooDB: FOOD00171)
Mexican groundcherry (FooDB: FOOD00491)
Green bell pepper (FooDB: FOOD00877)
Yellow bell pepper (FooDB: FOOD00878)
Red bell pepper (FooDB: FOOD00880)
Italian sweet red pepper (FooDB: FOOD00881)
Garden tomato (var.) (FooDB: FOOD00173)
Cherry tomato (FooDB: FOOD00172)
Pepper (C. baccatum) (FooDB: FOOD00231)
Pepper (C. chinense) (FooDB: FOOD00232)
Pepper (Capsicum) (FooDB: FOOD00233)
Pepper (C. frutescens) (FooDB: FOOD00428)
Pepper (C. pubescens) (FooDB: FOOD00849)
Orange bell pepper (FooDB: FOOD00879)

Root vegetable

Cabbage

Leaf vegetable

Lettuce (FooDB: FOOD00095)
Swiss chard (FooDB: FOOD00237)
Garden cress (FooDB: FOOD00099)
Endive (FooDB: FOOD00048)
Spinach (FooDB: FOOD00178)
Common beet (FooDB: FOOD00025)
Garland chrysanthemum (FooDB: FOOD00333)
Jute (FooDB: FOOD00389)
Lambsquarters (FooDB: FOOD00394)
New Zealand spinach (FooDB: FOOD00415)
Swamp cabbage (FooDB: FOOD00091)
Rocket salad (ssp.) (FooDB: FOOD00077)
Yautia (FooDB: FOOD00510)
Romaine lettuce (FooDB: FOOD00888)
Rocket salad (FooDB: FOOD00244)
Chicory leaves (FooDB: FOOD00250)
Corn salad (FooDB: FOOD00340)
Malabar spinach (FooDB: FOOD00404)
Ostrich fern (FooDB: FOOD00556)
Green vegetables (FooDB: FOOD00872)

Mushroom

Tuber

Onion-family vegetable

Leek (FooDB: FOOD00007)
Allium (FooDB: FOOD00005)
Wild leek (FooDB: FOOD00396)
Shallot (FooDB: FOOD00243)
Garden onion (FooDB: FOOD00006)
Garden onion (var.) (FooDB: FOOD00226)
Onion-family vegetables (FooDB: FOOD00855)
Green onion (FooDB: FOOD00963)
Red onion (FooDB: FOOD00962)

Other vegetable

Okra (FooDB: FOOD00420)
Horseradish tree (FooDB: FOOD00379)
Sacred lotus (FooDB: FOOD00402)
Tree fern (FooDB: FOOD00797)
Chinese water chestnut (FooDB: FOOD00332)
Nopal (FooDB: FOOD00416)
Carob (FooDB: FOOD00321)
Agave (FooDB: FOOD00563)
Narrowleaf cattail (FooDB: FOOD00564)
Giant butterbur (FooDB: FOOD00314)
Sesbania flower (FooDB: FOOD00469)

Stalk vegetable

Brassica

Brassicas (FooDB: FOOD00857)

Cereal and cereal product

Other bread

Other bread (FooDB: FOOD00269)

Cereal

Cereal product

Dough

Sourdough (FooDB: FOOD00275)

Cereals and cereal products (FooDB: FOOD00858)

Pulse

Bean

Lentil

Lentils (FooDB: FOOD00098)

Pea

Other pulse

White lupine (FooDB: FOOD00403)
Lupine (FooDB: FOOD00104)

Pulses (FooDB: FOOD00867)

Soy

Soy bean (FooDB: FOOD00085)

Soy product

Other soy product (FooDB: FOOD00271)

Abalone (FooDB: FOOD00279)
Conch (FooDB: FOOD00611)

Gourd

Chayote (FooDB: FOOD00325)
Cucumber (FooDB: FOOD00065)
Muskmelon (FooDB: FOOD00064)
Cucurbita (FooDB: FOOD00066)
Watermelon (FooDB: FOOD00052)
Bitter gourd (FooDB: FOOD00115)
Calabash (FooDB: FOOD00318)
Towel gourd (FooDB: FOOD00492)
Winter squash (FooDB: FOOD00283)
Butternut squash (FooDB: FOOD00317)
Wax gourd (FooDB: FOOD00499)
Green zucchini (FooDB: FOOD00875)
Yellow zucchini (FooDB: FOOD00876)
Japanese pumpkin (FooDB: FOOD00886)
Sunburst squash (pattypan squash) (FooDB: FOOD00874)
Tinda (FooDB: FOOD00559)
Horned melon (FooDB: FOOD00761)

Tea

Herbal tea

Greenthread tea (FooDB: FOOD00820)

Cocoa and cocoa product

Cocoa

Cocoa bean (FooDB: FOOD00182)

Process

Naturally occurring process

Biological process

Biochemical pathway

Metabolic pathway

Steroid Biosynthesis (PathBank: SMP0002381)
Cholesterol Biosynthesis and Metabolism CE(14:0) (PathBank: SMP0002435)
Cholesterol Biosynthesis and Metabolism CE(10:0) (PathBank: SMP0002436)
Cholesterol Biosynthesis and Metabolism CE(12:0) (PathBank: SMP0002438)
Cholesterol Biosynthesis and Metabolism CE(16:0) (PathBank: SMP0002440)
Cholesterol Biosynthesis and Metabolism CE(18:0) (PathBank: SMP0002441)
Cholesterol Biosynthesis and Metabolism (PathBank: SMP0070041)

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	0.003 g/l	ALOGPS
LogP	5.55	ALOGPS

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	5.55	ALOGPS
logP	5.63	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	14.75	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	127.5 m³·mol⁻¹	ChemAxon
Polarizability	52.66 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	198.368	31661259
DarkChem	[M-H]-	194.076	31661259
DeepCCS	[M-2H]-	237.167	30932474
DeepCCS	[M+Na]+	211.007	30932474
AllCCS	[M+H]+	207.6	32859911
AllCCS	[M+H-H2O]+	205.6	32859911
AllCCS	[M+NH4]+	209.4	32859911
AllCCS	[M+Na]+	210.0	32859911
AllCCS	[M-H]-	207.3	32859911
AllCCS	[M+Na-2H]-	209.2	32859911
AllCCS	[M+HCOO]-	211.5	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
4??-hydroxymethyl-5??-cholesta-8,24-dien-3??-ol	[H][C@@](C)(CCC=C(C)C)[C@@]1([H])CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@]([H])(O)[C@@]([H])(CO)[C@]1([H])CC3	2437.6	Standard polar	33892256
4??-hydroxymethyl-5??-cholesta-8,24-dien-3??-ol	[H][C@@](C)(CCC=C(C)C)[C@@]1([H])CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@]([H])(O)[C@@]([H])(CO)[C@]1([H])CC3	3397.5	Standard non polar	33892256
4??-hydroxymethyl-5??-cholesta-8,24-dien-3??-ol	[H][C@@](C)(CCC=C(C)C)[C@@]1([H])CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@]([H])(O)[C@@]([H])(CO)[C@]1([H])CC3	3540.1	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
4??-hydroxymethyl-5??-cholesta-8,24-dien-3??-ol,1TMS,isomer #1	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O[Si](C)(C)C)[C@@H](CO)[C@@H]1CC3	3400.1	Semi standard non polar	33892256
4??-hydroxymethyl-5??-cholesta-8,24-dien-3??-ol,1TMS,isomer #2	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O)[C@@H](CO[Si](C)(C)C)[C@@H]1CC3	3393.8	Semi standard non polar	33892256
4??-hydroxymethyl-5??-cholesta-8,24-dien-3??-ol,2TMS,isomer #1	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O[Si](C)(C)C)[C@@H](CO[Si](C)(C)C)[C@@H]1CC3	3364.0	Semi standard non polar	33892256
4??-hydroxymethyl-5??-cholesta-8,24-dien-3??-ol,1TBDMS,isomer #1	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](CO)[C@@H]1CC3	3638.3	Semi standard non polar	33892256
4??-hydroxymethyl-5??-cholesta-8,24-dien-3??-ol,1TBDMS,isomer #2	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O)[C@@H](CO[Si](C)(C)C(C)(C)C)[C@@H]1CC3	3642.6	Semi standard non polar	33892256
4??-hydroxymethyl-5??-cholesta-8,24-dien-3??-ol,2TBDMS,isomer #1	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](CO[Si](C)(C)C(C)(C)C)[C@@H]1CC3	3845.6	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol GC-MS (Non-derivatized) - 70eV, Positive	splash10-01pa-1009000000-26a6475677afe7b86ff0	2017-09-20	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol GC-MS (2 TMS) - 70eV, Positive	splash10-0006-3101390000-9a7be192c5b850bae998	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 10V, Positive-QTOF	splash10-00kb-0009200000-fb9d9da8d800cbb77c57	2016-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 20V, Positive-QTOF	splash10-00mk-1129000000-07f91a13ea0c71c30b46	2016-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 40V, Positive-QTOF	splash10-00kr-3349000000-007fd27f2aa78fbc9668	2016-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 10V, Negative-QTOF	splash10-03di-0005900000-382ae0402f58c37c22b8	2016-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 20V, Negative-QTOF	splash10-03yj-0009300000-45e0d9ea13779bd99e48	2016-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 40V, Negative-QTOF	splash10-014i-0009000000-60f16771dffdf7c66ae3	2016-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 10V, Negative-QTOF	splash10-03di-0000900000-801eb48ce946466924ed	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 20V, Negative-QTOF	splash10-03di-0004900000-92d53d75d6e6153b2131	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 40V, Negative-QTOF	splash10-0159-0019100000-cd2bf3ea42d6768ccc4a	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 10V, Positive-QTOF	splash10-014i-1009600000-97b72d6eac7ef795f857	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 20V, Positive-QTOF	splash10-03di-5039600000-31180bbee1c6dd4345e5	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol 40V, Positive-QTOF	splash10-053l-9002000000-6af8af0e7d43f4dfe3c9	2021-09-24	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

20059530

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

22298940

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
Dietschy JM, Turley SD: Thematic review series: brain Lipids. Cholesterol metabolism in the central nervous system during early development and in the mature animal. J Lipid Res. 2004 Aug;45(8):1375-97. [PubMed:15254070 ]
O'Byrne SM, Blaner WS: Retinol and retinyl esters: biochemistry and physiology. J Lipid Res. 2013 Jul;54(7):1731-43. doi: 10.1194/jlr.R037648. Epub 2013 Apr 26. [PubMed:23625372 ]
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.
Linda T. Welson (2006). Triglycerides and Cholesterol Research. Nova Science Publishers Inc..

Showing metabocard for 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol (HMDB0062392)

MOL for HMDB0062392 (4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol)

3D MOL for HMDB0062392 (4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol)

3D SDF for HMDB0062392 (4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol)

3D-SDF for HMDB0062392 (4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol)

PDB for HMDB0062392 (4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol)

3D PDB for HMDB0062392 (4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol)

SMILES for HMDB0062392 (4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol)

INCHI for HMDB0062392 (4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol)

Structure for HMDB0062392 (4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol)

3D Structure for HMDB0062392 (4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra