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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-03-21 06:15:27 UTC
Update Date2022-03-07 03:17:54 UTC
HMDB IDHMDB0062407
Secondary Accession Numbers
  • HMDB62407
Metabolite Identification
Common Name5-(3-Pyridyl)-2-hydroxytetrahydrofuran
Description5-(3-Pyridyl)-2-hydroxytetrahydrofuran belongs to the class of organic compounds known as pyridines and derivatives. Pyridines and derivatives are compounds containing a pyridine ring, which is a six-member aromatic heterocycle which consists of one nitrogen atom and five carbon atoms. 5-(3-Pyridyl)-2-hydroxytetrahydrofuran is a strong basic compound (based on its pKa).
Structure
Data?1563866307
SynonymsNot Available
Chemical FormulaC9H11NO2
Average Molecular Weight165.192
Monoisotopic Molecular Weight165.078978598
IUPAC Name5-(pyridin-3-yl)oxolan-2-ol
Traditional Name5-(pyridin-3-yl)oxolan-2-ol
CAS Registry Number53798-73-5
SMILES
OC1CCC(O1)C1=CN=CC=C1
InChI Identifier
InChI=1S/C9H11NO2/c11-9-4-3-8(12-9)7-2-1-5-10-6-7/h1-2,5-6,8-9,11H,3-4H2
InChI KeyLHGVLZHIYVKZBT-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyridines and derivatives. Pyridines and derivatives are compounds containing a pyridine ring, which is a six-member aromatic heterocycle which consists of one nitrogen atom and five carbon atoms.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyridines and derivatives
Sub ClassNot Available
Direct ParentPyridines and derivatives
Alternative Parents
Substituents
  • Pyridine
  • Heteroaromatic compound
  • Tetrahydrofuran
  • Hemiacetal
  • Oxacycle
  • Azacycle
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility239 g/lALOGPS
LogP0.21ALOGPS
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP0.21ALOGPS
logP0.5ChemAxon
logS0.16ALOGPS
pKa (Strongest Acidic)12.45ChemAxon
pKa (Strongest Basic)4.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area42.35 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity43.82 m³·mol⁻¹ChemAxon
Polarizability17.2 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+137.14631661259
DarkChem[M-H]-132.85231661259
DeepCCS[M+H]+136.46830932474
DeepCCS[M-H]-132.730932474
DeepCCS[M-2H]-170.26730932474
DeepCCS[M+Na]+145.80530932474
AllCCS[M+H]+136.532859911
AllCCS[M+H-H2O]+131.832859911
AllCCS[M+NH4]+140.932859911
AllCCS[M+Na]+142.132859911
AllCCS[M-H]-136.932859911
AllCCS[M+Na-2H]-137.632859911
AllCCS[M+HCOO]-138.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
5-(3-Pyridyl)-2-hydroxytetrahydrofuranOC1CCC(O1)C1=CN=CC=C12302.0Standard polar33892256
5-(3-Pyridyl)-2-hydroxytetrahydrofuranOC1CCC(O1)C1=CN=CC=C11473.5Standard non polar33892256
5-(3-Pyridyl)-2-hydroxytetrahydrofuranOC1CCC(O1)C1=CN=CC=C11511.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
5-(3-Pyridyl)-2-hydroxytetrahydrofuran,1TMS,isomer #1C[Si](C)(C)OC1CCC(C2=CC=CN=C2)O11580.3Semi standard non polar33892256
5-(3-Pyridyl)-2-hydroxytetrahydrofuran,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1CCC(C2=CC=CN=C2)O11823.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran GC-MS (Non-derivatized) - 70eV, Positivesplash10-05ox-6900000000-78a8fb046367d6e3f4db2017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran GC-MS (1 TMS) - 70eV, Positivesplash10-00dr-9500000000-7ad1781d423fd12586c32017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 10V, Positive-QTOFsplash10-014i-0900000000-857d28ad50524e6cdb252017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 20V, Positive-QTOFsplash10-014i-1900000000-c2ce8dd012da1a48448b2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 40V, Positive-QTOFsplash10-00kf-9000000000-c6a9c4fd2cbc8fe254322017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 10V, Negative-QTOFsplash10-03di-0900000000-0c1ad0dd933b5a7a659c2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 20V, Negative-QTOFsplash10-02ta-0900000000-c2751cd34472444aea632017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 40V, Negative-QTOFsplash10-0006-9100000000-0b171e04f2dd8e04fb3b2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 10V, Positive-QTOFsplash10-014i-0900000000-72909d44ace41c7f8b572021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 20V, Positive-QTOFsplash10-014i-3900000000-5aea0837581e38d052762021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 40V, Positive-QTOFsplash10-00mo-9200000000-1f1e4be129dbd34512572021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 10V, Negative-QTOFsplash10-03fr-3900000000-b6542f3ba759559c47502021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 20V, Negative-QTOFsplash10-01t9-9600000000-03bb75c5c76a395071e02021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5-(3-Pyridyl)-2-hydroxytetrahydrofuran 40V, Negative-QTOFsplash10-004i-9300000000-c46833a70e48979552bf2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDC19578
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound179630
PDB IDNot Available
ChEBI ID82572
Food Biomarker OntologyNot Available
VMH IDM01035
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available