Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-09-08 23:09:50 UTC
Update Date2022-11-30 19:25:02 UTC
HMDB IDHMDB0113470
Secondary Accession NumbersNone
Metabolite Identification
Common NamePE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0)
DescriptionPE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0) is a monomethylphosphatidylethanolamine. It is a glycerophospholipid, and it is formed by sequential methylation of phosphatidylethanolamine as part of a mechanism for biosynthesis of phosphatidylcholine. Monomethylphosphatidylethanolamines are usually found at trace levels in animal or plant tissues. They can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. PE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0), in particular, consists of one chain of eicosatetraenoic acid at the C-1 position and one chain of behenic acid at the C-2 position. Fatty acids containing 16, 18 and 20 carbons are the most common. Phospholipids are ubiquitous in nature. They are key components of the cell lipid bilayer and are involved in metabolism and signaling.
Structure
Data?1563873369
Synonyms
ValueSource
1-eicosatetraenoyl-2-behenoyl-sn-glycero-3-phosphoethanolamine-N-monomethylSMPDB, HMDB
PE-NMe(20:4/22:0)SMPDB, HMDB
PE-NMe(20:4n3/22:0)SMPDB, HMDB
PE-NMe(20:4w3/22:0)SMPDB, HMDB
PE-NMe(42:4)SMPDB, HMDB
MMPE(20:4(8Z,11Z,14Z,17Z)/22:0)SMPDB, HMDB
MMPE(20:4/22:0)SMPDB, HMDB
MMPE(20:4n3/22:0)SMPDB, HMDB
MMPE(20:4w3/22:0)SMPDB, HMDB
MMPE(42:4)SMPDB, HMDB
monomethylphosphatidylethanolamineSMPDB, HMDB
N-monomethylphosphatidylethanolamineSMPDB, HMDB
phosphatidyl-N-methylethanolamineSMPDB, HMDB
PE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0)SMPDB
[2-(Docosanoyloxy)-3-[(8Z,11Z,14Z,17Z)-icosa-8,11,14,17-tetraenoyloxy]propoxy][2-(methylamino)ethoxy]phosphinateGenerator, HMDB
Chemical FormulaC48H88NO8P
Average Molecular Weight838.205
Monoisotopic Molecular Weight837.624755796
IUPAC Name[2-(docosanoyloxy)-3-[(8Z,11Z,14Z,17Z)-icosa-8,11,14,17-tetraenoyloxy]propoxy][2-(methylamino)ethoxy]phosphinic acid
Traditional Name2-(docosanoyloxy)-3-[(8Z,11Z,14Z,17Z)-icosa-8,11,14,17-tetraenoyloxy]propoxy(2-(methylamino)ethoxy)phosphinic acid
CAS Registry NumberNot Available
SMILES
[H]C(COC(=O)CCCCCC\C=C/C\C=C/C\C=C/C\C=C/CC)(COP(O)(=O)OCCNC)OC(=O)CCCCCCCCCCCCCCCCCCCCC
InChI Identifier
InChI=1S/C48H88NO8P/c1-4-6-8-10-12-14-16-18-20-22-23-25-27-29-31-33-35-37-39-41-48(51)57-46(45-56-58(52,53)55-43-42-49-3)44-54-47(50)40-38-36-34-32-30-28-26-24-21-19-17-15-13-11-9-7-5-2/h7,9,13,15,19,21,26,28,46,49H,4-6,8,10-12,14,16-18,20,22-25,27,29-45H2,1-3H3,(H,52,53)/b9-7-,15-13-,21-19-,28-26-
InChI KeyJLEFKGATKSEIBG-WRHAJVAWSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as monomethylphosphatidylethanolamines. These are lipids with a structure containing a glycerol moiety linked at its terminal C3 atom to a N-methylphosphoethanolamine group, and at its C1 and C2 terminal atoms by an acyl group.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphoethanolamines
Direct ParentMonomethylphosphatidylethanolamines
Alternative Parents
Substituents
  • Monomethylphosphatidylethanolamine
  • Phosphoethanolamine
  • Fatty acid ester
  • Dialkyl phosphate
  • Dicarboxylic acid or derivatives
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Amino acid or derivatives
  • Carboxylic acid ester
  • Secondary amine
  • Secondary aliphatic amine
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Organic nitrogen compound
  • Organopnictogen compound
  • Carbonyl group
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
DispositionNot Available
Process
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP9.59ALOGPS
logP13.67ChemAxon
logS-7.4ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)10.05ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area120.39 ŲChemAxon
Rotatable Bond Count46ChemAxon
Refractivity246.25 m³·mol⁻¹ChemAxon
Polarizability103.86 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+313.46531661259
DarkChem[M-H]-296.61731661259
DeepCCS[M+H]+307.40530932474
DeepCCS[M-H]-305.50930932474
DeepCCS[M-2H]-338.75330932474
DeepCCS[M+Na]+313.18430932474
AllCCS[M+H]+297.432859911
AllCCS[M+H-H2O]+297.432859911
AllCCS[M+NH4]+297.432859911
AllCCS[M+Na]+297.432859911
AllCCS[M-H]-292.932859911
AllCCS[M+Na-2H]-299.932859911
AllCCS[M+HCOO]-307.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0)[H]C(COC(=O)CCCCCC\C=C/C\C=C/C\C=C/C\C=C/CC)(COP(O)(=O)OCCNC)OC(=O)CCCCCCCCCCCCCCCCCCCCC5405.1Standard polar33892256
PE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0)[H]C(COC(=O)CCCCCC\C=C/C\C=C/C\C=C/C\C=C/CC)(COP(O)(=O)OCCNC)OC(=O)CCCCCCCCCCCCCCCCCCCCC5405.2Standard non polar33892256
PE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0)[H]C(COC(=O)CCCCCC\C=C/C\C=C/C\C=C/C\C=C/CC)(COP(O)(=O)OCCNC)OC(=O)CCCCCCCCCCCCCCCCCCCCC5817.5Semi standard non polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0) 10V, Negative-QTOFsplash10-0f79-1400000290-c124ea3ae3560b9229be2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0) 20V, Negative-QTOFsplash10-0ug1-5709430020-7081d8b528fbcab54bfc2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0) 40V, Negative-QTOFsplash10-0ufr-9703000000-8492c3a9807b77a257d22021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0) 10V, Positive-QTOFsplash10-000i-5100002960-d1cb9e3d56517c98ece42021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0) 20V, Positive-QTOFsplash10-0a4i-9100007610-f6935e315ef16db8a1802021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe(20:4(8Z,11Z,14Z,17Z)/22:0) 40V, Positive-QTOFsplash10-0a4i-6932000000-0c3f9489588fdb0214102021-09-25Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131820582
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available