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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2017-09-09 00:06:21 UTC

Update Date

2022-11-30 19:25:15 UTC

HMDB ID

HMDB0113785

Secondary Accession Numbers

None

Metabolite Identification

Common Name

PE-NMe(11M5/11M3)

Description

PE-NMe(11M5/11M3) is a monomethylphosphatidylethanolamine. It is a glycerophospholipid, and it is formed by sequential methylation of phosphatidylethanolamine as part of a mechanism for biosynthesis of phosphatidylcholine. Monomethylphosphatidylethanolamines are usually found at trace levels in animal or plant tissues. They can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. PE-NMe(11M5/11M3), in particular, consists of one chain of 11-(3-methyl-5-pentylfuran-2-yl)undecanoic acid at the C-1 position and one chain of 11-(3-methyl-5-propylfuran-2-yl)undecanoic acid at the C-2 position. Fatty acids containing 16, 18 and 20 carbons are the most common. Phospholipids are ubiquitous in nature. They are key components of the cell lipid bilayer and are involved in metabolism and signaling.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309091702062D          

 59 60  0  0  1  0            999 V2000
   39.5433   -6.3949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2334   -7.5125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0425   -9.5337    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.2795   -6.3761    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2643   -2.8283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   38.7228   -6.3087    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0539   -7.5988    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   38.2379   -6.9761    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.2340   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.0880   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.5195   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.8024   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.9484   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.3735   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.8050   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5169   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6590   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.6629   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.0906   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.2314   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   37.4174   -6.8899    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9445   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.3774   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.3761   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.9458   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3894   -8.3525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   36.9325   -7.5574    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2301   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.0918   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.6616   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.6603   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2643   -4.2572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.8518   -4.9717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6224   -9.1532    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   35.6995   -6.7566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.5182   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.8037   -6.9237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4294   -8.9816    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.8926   -6.9282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2099   -8.4387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   36.1120   -7.4711    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.8037   -7.7487    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   15.5156   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.8063   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.9471   -8.1612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.3748   -7.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.8518   -3.5427    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   26.9471   -8.9862    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.3748   -6.9237    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.9143   -5.6862    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.0893   -4.8612    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.2327   -7.7487    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.2643   -5.6862    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.0893   -6.5112    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.7619   -7.8256    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   35.5600   -8.0842    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.0893   -8.1612    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.0893   -5.6862    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   25.5182   -7.3362    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  1  1  0  0  0  0
  7  2  1  0  0  0  0
  8  6  1  0  0  0  0
 11  9  1  0  0  0  0
 12 10  1  0  0  0  0
 13  9  1  0  0  0  0
 14 10  1  0  0  0  0
 15 11  1  0  0  0  0
 16 12  1  0  0  0  0
 17 14  1  0  0  0  0
 18 13  1  0  0  0  0
 19 15  1  0  0  0  0
 20 16  1  0  0  0  0
 21  8  1  0  0  0  0
 22 17  1  0  0  0  0
 23 18  1  0  0  0  0
 24 19  1  0  0  0  0
 25 20  1  0  0  0  0
 26  7  1  0  0  0  0
 27 21  1  0  0  0  0
 28 22  1  0  0  0  0
 29 23  1  0  0  0  0
 30 24  1  0  0  0  0
 31 25  1  0  0  0  0
 33 32  1  0  0  0  0
 38  3  1  0  0  0  0
 38 34  1  0  0  0  0
 39  4  1  0  0  0  0
 39 35  1  0  0  0  0
 40 26  1  0  0  0  0
 40 34  2  0  0  0  0
 41 27  1  0  0  0  0
 41 35  2  0  0  0  0
 42 36  1  0  0  0  0
 42 37  1  0  0  0  0
 43 28  1  0  0  0  0
 43 38  2  0  0  0  0
 44 29  1  0  0  0  0
 44 39  2  0  0  0  0
 45 30  1  0  0  0  0
 46 31  1  0  0  0  0
 47  5  1  0  0  0  0
 47 32  1  0  0  0  0
 48 45  2  0  0  0  0
 49 46  2  0  0  0  0
 52 36  1  0  0  0  0
 52 45  1  0  0  0  0
 53 33  1  0  0  0  0
 54 37  1  0  0  0  0
 55 40  1  0  0  0  0
 55 43  1  0  0  0  0
 56 41  1  0  0  0  0
 56 44  1  0  0  0  0
 42 57  1  6  0  0  0
 57 46  1  0  0  0  0
 58 50  1  0  0  0  0
 58 51  2  0  0  0  0
 58 53  1  0  0  0  0
 58 54  1  0  0  0  0
 42 59  1  6  0  0  0
M  END

HMDB0113785
     RDKit          3D
PE-NMe(11M5/11M3)
138139  0  0  0  0  0  0  0  0999 V2000
   -5.9331    2.9893   -1.7758 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6501    3.7762   -1.8616 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7860    3.2134   -2.9952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5253    4.0181   -3.0476 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5669    3.5802   -4.1240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3747    4.4926   -4.0216 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2089    5.6866   -4.6878 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0289    6.2154   -4.3138 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6038    7.4967   -4.8052 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5501    5.2987   -3.4302 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8727    5.4336   -2.7559 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7572    6.4556   -1.6347 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7245    6.0322   -0.6244 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6566    7.0925    0.4673 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6364    6.7212    1.4942 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8568    5.4462    2.2223 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9765    5.3153    3.1497 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3670    5.5380    2.8714 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2537    4.8520    1.9546 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5629    3.4071    2.1483 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4794    2.4640    1.9634 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4542    2.7949    1.3440 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5051    1.1466    2.4555 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3820    0.3126    2.1995 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4925   -1.0410    2.7961 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7178   -1.7755    2.2529 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8653   -2.9954    2.8458 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1518   -3.9273    2.3772 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.9295   -5.4047    2.6838 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2868   -3.8480    0.6733 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6216   -3.5020    3.0448 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8214   -2.1603    3.2329 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1988   -1.8784    3.8501 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2749   -0.4366    3.9950 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.3480    0.0582    4.9973 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3732   -1.8361    2.4891 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5655   -2.4069    3.4355 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8158   -2.2511    4.6468 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6364   -3.2250    3.0210 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7634   -3.0726    1.5248 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9169   -3.7609    0.9047 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9384   -5.2421    1.0950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1499   -5.8659    0.4032 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4131   -5.3110    0.9706 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6424   -5.9057    0.3114 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7119   -5.6309   -1.1529 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7855   -4.1466   -1.4675 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8709   -3.9528   -2.9748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6739   -4.4882   -3.6547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6074   -5.6531   -4.2819 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4012   -5.8215   -4.7709 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8480   -6.9617   -5.5499 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2924   -7.9725   -4.5496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2116   -7.3822   -3.6957 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6404   -4.6983   -4.4407 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4655   -3.8531   -3.7266 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0707   -2.5193   -3.1826 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6875    4.2981   -3.2876 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2611    2.8299   -0.7403 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7108    3.5943   -2.3073 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7907    2.0423   -2.3298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0388    3.6975   -0.9340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8636    4.8620   -2.0009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5752    2.1606   -2.6939 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3671    3.2818   -3.9138 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8052    5.0874   -3.2686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9947    4.0442   -2.0750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1745    2.5521   -3.9333 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0090    3.6889   -5.1202 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8784    6.1533   -5.3701 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7130    7.3999   -4.8600 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3851    8.3447   -4.1320 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1579    7.7704   -5.7970 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6344    5.8295   -3.4696 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2356    4.4583   -2.3925 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7651    6.4859   -1.1607 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5528    7.4577   -2.0124 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9427    5.0315   -0.2697 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7337    5.9649   -1.1413 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6368    7.3745    0.7970 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2280    8.0024   -0.0615 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3697    6.7871    1.0254 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6537    7.5447    2.2624 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0967    5.3583    2.8959 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7120    4.5563    1.5741 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7144    6.0405    4.0293 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8348    4.3201    3.7221 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8928    5.3883    3.9227 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5692    6.6621    2.7512 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0092    5.0272    0.8573 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2679    5.4039    2.0170 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1013    3.2417    3.1441 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3926    3.1156    1.4176 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5023    0.8202    2.7027 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1927    0.2899    1.0968 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5642   -0.9491    3.9051 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4776   -1.9694    1.1664 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5644   -1.1004    2.2446 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6117   -4.4969    0.3180 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8686   -1.6668    2.2385 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1089   -1.6871    3.9409 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652309091702062D          

 59 60  0  0  1  0            999 V2000
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 38  3  1  0  0  0  0
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 53 33  1  0  0  0  0
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 42 57  1  6  0  0  0
 57 46  1  0  0  0  0
 58 50  1  0  0  0  0
 58 51  2  0  0  0  0
 58 53  1  0  0  0  0
 58 54  1  0  0  0  0
 42 59  1  6  0  0  0
M  END
> <DATABASE_ID>
HMDB0113785

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@](COC(=O)CCCCCCCCCCC1=C(C)C=C(CCCCC)O1)(COP(O)(=O)OCCNC)OC(=O)CCCCCCCCCCC1=C(C)C=C(CCC)O1

> <INCHI_IDENTIFIER>
InChI=1S/C46H80NO10P/c1-6-8-21-27-41-35-39(4)44(56-41)29-23-18-13-9-11-15-19-24-30-45(48)52-36-42(37-54-58(50,51)53-33-32-47-5)57-46(49)31-25-20-16-12-10-14-17-22-28-43-38(3)34-40(55-43)26-7-2/h34-35,42,47H,6-33,36-37H2,1-5H3,(H,50,51)/t42-/m1/s1

> <INCHI_KEY>
DKRFYCVSWCFPNW-HUESYALOSA-N

> <FORMULA>
C46H80NO10P

> <MOLECULAR_WEIGHT>
838.117

> <EXACT_MASS>
837.551984778

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
138

> <JCHEM_AVERAGE_POLARIZABILITY>
102.8767357396808

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2R)-3-{[11-(3-methyl-5-pentylfuran-2-yl)undecanoyl]oxy}-2-{[11-(3-methyl-5-propylfuran-2-yl)undecanoyl]oxy}propoxy][2-(methylamino)ethoxy]phosphinic acid

> <ALOGPS_LOGP>
7.70

> <JCHEM_LOGP>
11.443619373583957

> <ALOGPS_LOGS>
-5.55

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8562038678038975

> <JCHEM_PKA_STRONGEST_BASIC>
10.045225536700048

> <JCHEM_POLAR_SURFACE_AREA>
146.67

> <JCHEM_REFRACTIVITY>
232.08410000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
40

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.38e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-3-{[11-(3-methyl-5-pentylfuran-2-yl)undecanoyl]oxy}-2-{[11-(3-methyl-5-propylfuran-2-yl)undecanoyl]oxy}propoxy(2-(methylamino)ethoxy)phosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0113785
     RDKit          3D
PE-NMe(11M5/11M3)
138139  0  0  0  0  0  0  0  0999 V2000
   -5.9331    2.9893   -1.7758 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6501    3.7762   -1.8616 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7860    3.2134   -2.9952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5253    4.0181   -3.0476 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5669    3.5802   -4.1240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3747    4.4926   -4.0216 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2089    5.6866   -4.6878 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0289    6.2154   -4.3138 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6038    7.4967   -4.8052 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5501    5.2987   -3.4302 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8727    5.4336   -2.7559 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7572    6.4556   -1.6347 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.3670    5.5380    2.8714 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2537    4.8520    1.9546 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 09-SEP-17   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-17         0                                  
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HETATM   43  C   UNK     0      28.962 -15.234   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      64.972 -14.464   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      50.301 -15.234   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      43.633 -14.464   0.000  0.00  0.00           C+0
HETATM   47  N   UNK     0      42.657  -6.613   0.000  0.00  0.00           N+0
HETATM   48  O   UNK     0      50.301 -16.774   0.000  0.00  0.00           O+0
HETATM   49  O   UNK     0      43.633 -12.924   0.000  0.00  0.00           O+0
HETATM   50  O   UNK     0      46.507 -10.614   0.000  0.00  0.00           O+0
HETATM   51  O   UNK     0      44.967  -9.074   0.000  0.00  0.00           O+0
HETATM   52  O   UNK     0      48.968 -14.464   0.000  0.00  0.00           O+0
HETATM   53  O   UNK     0      43.427 -10.614   0.000  0.00  0.00           O+0
HETATM   54  O   UNK     0      44.967 -12.154   0.000  0.00  0.00           O+0
HETATM   55  O   UNK     0      27.556 -14.608   0.000  0.00  0.00           O+0
HETATM   56  O   UNK     0      66.379 -15.091   0.000  0.00  0.00           O+0
HETATM   57  O   UNK     0      44.967 -15.234   0.000  0.00  0.00           O+0
HETATM   58  P   UNK     0      44.967 -10.614   0.000  0.00  0.00           P+0
HETATM   59  H   UNK     0      47.634 -13.694   0.000  0.00  0.00           H+0
CONECT    1    6                                                            
CONECT    2    7                                                            
CONECT    3   38                                                            
CONECT    4   39                                                            
CONECT    5   47                                                            
CONECT    6    1    8                                                       
CONECT    7    2   26                                                       
CONECT    8    6   21                                                       
CONECT    9   11   13                                                       
CONECT   10   12   14                                                       
CONECT   11    9   15                                                       
CONECT   12   10   16                                                       
CONECT   13    9   18                                                       
CONECT   14   10   17                                                       
CONECT   15   11   19                                                       
CONECT   16   12   20                                                       
CONECT   17   14   22                                                       
CONECT   18   13   23                                                       
CONECT   19   15   24                                                       
CONECT   20   16   25                                                       
CONECT   21    8   27                                                       
CONECT   22   17   28                                                       
CONECT   23   18   29                                                       
CONECT   24   19   30                                                       
CONECT   25   20   31                                                       
CONECT   26    7   40                                                       
CONECT   27   21   41                                                       
CONECT   28   22   43                                                       
CONECT   29   23   44                                                       
CONECT   30   24   45                                                       
CONECT   31   25   46                                                       
CONECT   32   33   47                                                       
CONECT   33   32   53                                                       
CONECT   34   38   40                                                       
CONECT   35   39   41                                                       
CONECT   36   42   52                                                       
CONECT   37   42   54                                                       
CONECT   38    3   34   43                                                  
CONECT   39    4   35   44                                                  
CONECT   40   26   34   55                                                  
CONECT   41   27   35   56                                                  
CONECT   42   36   37   57   59                                             
CONECT   43   28   38   55                                                  
CONECT   44   29   39   56                                                  
CONECT   45   30   48   52                                                  
CONECT   46   31   49   57                                                  
CONECT   47    5   32                                                       
CONECT   48   45                                                            
CONECT   49   46                                                            
CONECT   50   58                                                            
CONECT   51   58                                                            
CONECT   52   36   45                                                       
CONECT   53   33   58                                                       
CONECT   54   37   58                                                       
CONECT   55   40   43                                                       
CONECT   56   41   44                                                       
CONECT   57   42   46                                                       
CONECT   58   50   51   53   54                                             
CONECT   59   42                                                            
MASTER        0    0    0    0    0    0    0    0   59    0  120    0
END

COMPND    HMDB0113785
HETATM    1  C1  UNL     1      -5.933   2.989  -1.776  1.00  0.00           C  
HETATM    2  C2  UNL     1      -4.650   3.776  -1.862  1.00  0.00           C  
HETATM    3  C3  UNL     1      -3.786   3.213  -2.995  1.00  0.00           C  
HETATM    4  C4  UNL     1      -2.525   4.018  -3.048  1.00  0.00           C  
HETATM    5  C5  UNL     1      -1.567   3.580  -4.124  1.00  0.00           C  
HETATM    6  C6  UNL     1      -0.375   4.493  -4.022  1.00  0.00           C  
HETATM    7  C7  UNL     1      -0.209   5.687  -4.688  1.00  0.00           C  
HETATM    8  C8  UNL     1       1.029   6.215  -4.314  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.604   7.497  -4.805  1.00  0.00           C  
HETATM   10  C10 UNL     1       1.550   5.299  -3.430  1.00  0.00           C  
HETATM   11  C11 UNL     1       2.873   5.434  -2.756  1.00  0.00           C  
HETATM   12  C12 UNL     1       2.757   6.456  -1.635  1.00  0.00           C  
HETATM   13  C13 UNL     1       1.724   6.032  -0.624  1.00  0.00           C  
HETATM   14  C14 UNL     1       1.657   7.093   0.467  1.00  0.00           C  
HETATM   15  C15 UNL     1       0.636   6.721   1.494  1.00  0.00           C  
HETATM   16  C16 UNL     1       0.857   5.446   2.222  1.00  0.00           C  
HETATM   17  C17 UNL     1       1.976   5.315   3.150  1.00  0.00           C  
HETATM   18  C18 UNL     1       3.367   5.538   2.871  1.00  0.00           C  
HETATM   19  C19 UNL     1       4.254   4.852   1.955  1.00  0.00           C  
HETATM   20  C20 UNL     1       4.563   3.407   2.148  1.00  0.00           C  
HETATM   21  C21 UNL     1       3.479   2.464   1.963  1.00  0.00           C  
HETATM   22  O1  UNL     1       2.454   2.795   1.344  1.00  0.00           O  
HETATM   23  O2  UNL     1       3.505   1.147   2.456  1.00  0.00           O  
HETATM   24  C22 UNL     1       2.382   0.313   2.199  1.00  0.00           C  
HETATM   25  C23 UNL     1       2.493  -1.041   2.796  1.00  0.00           C  
HETATM   26  C24 UNL     1       3.718  -1.776   2.253  1.00  0.00           C  
HETATM   27  O3  UNL     1       3.865  -2.995   2.846  1.00  0.00           O  
HETATM   28  P1  UNL     1       5.152  -3.927   2.377  1.00  0.00           P  
HETATM   29  O4  UNL     1       4.930  -5.405   2.684  1.00  0.00           O  
HETATM   30  O5  UNL     1       5.287  -3.848   0.673  1.00  0.00           O  
HETATM   31  O6  UNL     1       6.622  -3.502   3.045  1.00  0.00           O  
HETATM   32  C25 UNL     1       6.821  -2.160   3.233  1.00  0.00           C  
HETATM   33  C26 UNL     1       8.199  -1.878   3.850  1.00  0.00           C  
HETATM   34  N1  UNL     1       8.275  -0.437   3.995  1.00  0.00           N  
HETATM   35  C27 UNL     1       7.348   0.058   4.997  1.00  0.00           C  
HETATM   36  O7  UNL     1       1.373  -1.836   2.489  1.00  0.00           O  
HETATM   37  C28 UNL     1       0.565  -2.407   3.436  1.00  0.00           C  
HETATM   38  O8  UNL     1       0.816  -2.251   4.647  1.00  0.00           O  
HETATM   39  C29 UNL     1      -0.636  -3.225   3.021  1.00  0.00           C  
HETATM   40  C30 UNL     1      -0.763  -3.073   1.525  1.00  0.00           C  
HETATM   41  C31 UNL     1      -1.917  -3.761   0.905  1.00  0.00           C  
HETATM   42  C32 UNL     1      -1.938  -5.242   1.095  1.00  0.00           C  
HETATM   43  C33 UNL     1      -3.150  -5.866   0.403  1.00  0.00           C  
HETATM   44  C34 UNL     1      -4.413  -5.311   0.971  1.00  0.00           C  
HETATM   45  C35 UNL     1      -5.642  -5.906   0.311  1.00  0.00           C  
HETATM   46  C36 UNL     1      -5.712  -5.631  -1.153  1.00  0.00           C  
HETATM   47  C37 UNL     1      -5.786  -4.147  -1.468  1.00  0.00           C  
HETATM   48  C38 UNL     1      -5.871  -3.953  -2.975  1.00  0.00           C  
HETATM   49  C39 UNL     1      -4.674  -4.488  -3.655  1.00  0.00           C  
HETATM   50  O9  UNL     1      -4.607  -5.653  -4.282  1.00  0.00           O  
HETATM   51  C40 UNL     1      -3.401  -5.821  -4.771  1.00  0.00           C  
HETATM   52  C41 UNL     1      -2.848  -6.962  -5.550  1.00  0.00           C  
HETATM   53  C42 UNL     1      -2.292  -7.973  -4.550  1.00  0.00           C  
HETATM   54  C43 UNL     1      -1.212  -7.382  -3.696  1.00  0.00           C  
HETATM   55  C44 UNL     1      -2.640  -4.698  -4.441  1.00  0.00           C  
HETATM   56  C45 UNL     1      -3.466  -3.853  -3.727  1.00  0.00           C  
HETATM   57  C46 UNL     1      -3.071  -2.519  -3.183  1.00  0.00           C  
HETATM   58  O10 UNL     1       0.688   4.298  -3.288  1.00  0.00           O  
HETATM   59  H1  UNL     1      -6.261   2.830  -0.740  1.00  0.00           H  
HETATM   60  H2  UNL     1      -6.711   3.594  -2.307  1.00  0.00           H  
HETATM   61  H3  UNL     1      -5.791   2.042  -2.330  1.00  0.00           H  
HETATM   62  H4  UNL     1      -4.039   3.697  -0.934  1.00  0.00           H  
HETATM   63  H5  UNL     1      -4.864   4.862  -2.001  1.00  0.00           H  
HETATM   64  H6  UNL     1      -3.575   2.161  -2.694  1.00  0.00           H  
HETATM   65  H7  UNL     1      -4.367   3.282  -3.914  1.00  0.00           H  
HETATM   66  H8  UNL     1      -2.805   5.087  -3.269  1.00  0.00           H  
HETATM   67  H9  UNL     1      -1.995   4.044  -2.075  1.00  0.00           H  
HETATM   68  H10 UNL     1      -1.175   2.552  -3.933  1.00  0.00           H  
HETATM   69  H11 UNL     1      -2.009   3.689  -5.120  1.00  0.00           H  
HETATM   70  H12 UNL     1      -0.878   6.153  -5.370  1.00  0.00           H  
HETATM   71  H13 UNL     1       2.713   7.400  -4.860  1.00  0.00           H  
HETATM   72  H14 UNL     1       1.385   8.345  -4.132  1.00  0.00           H  
HETATM   73  H15 UNL     1       1.158   7.770  -5.797  1.00  0.00           H  
HETATM   74  H16 UNL     1       3.634   5.829  -3.470  1.00  0.00           H  
HETATM   75  H17 UNL     1       3.236   4.458  -2.392  1.00  0.00           H  
HETATM   76  H18 UNL     1       3.765   6.486  -1.161  1.00  0.00           H  
HETATM   77  H19 UNL     1       2.553   7.458  -2.012  1.00  0.00           H  
HETATM   78  H20 UNL     1       1.943   5.031  -0.270  1.00  0.00           H  
HETATM   79  H21 UNL     1       0.734   5.965  -1.141  1.00  0.00           H  
HETATM   80  H22 UNL     1       2.637   7.374   0.797  1.00  0.00           H  
HETATM   81  H23 UNL     1       1.228   8.002  -0.062  1.00  0.00           H  
HETATM   82  H24 UNL     1      -0.370   6.787   1.025  1.00  0.00           H  
HETATM   83  H25 UNL     1       0.654   7.545   2.262  1.00  0.00           H  
HETATM   84  H26 UNL     1      -0.097   5.358   2.896  1.00  0.00           H  
HETATM   85  H27 UNL     1       0.712   4.556   1.574  1.00  0.00           H  
HETATM   86  H28 UNL     1       1.714   6.040   4.029  1.00  0.00           H  
HETATM   87  H29 UNL     1       1.835   4.320   3.722  1.00  0.00           H  
HETATM   88  H30 UNL     1       3.893   5.388   3.923  1.00  0.00           H  
HETATM   89  H31 UNL     1       3.569   6.662   2.751  1.00  0.00           H  
HETATM   90  H32 UNL     1       4.009   5.027   0.857  1.00  0.00           H  
HETATM   91  H33 UNL     1       5.268   5.404   2.017  1.00  0.00           H  
HETATM   92  H34 UNL     1       5.101   3.242   3.144  1.00  0.00           H  
HETATM   93  H35 UNL     1       5.393   3.116   1.418  1.00  0.00           H  
HETATM   94  H36 UNL     1       1.502   0.820   2.703  1.00  0.00           H  
HETATM   95  H37 UNL     1       2.193   0.290   1.097  1.00  0.00           H  
HETATM   96  H38 UNL     1       2.564  -0.949   3.905  1.00  0.00           H  
HETATM   97  H39 UNL     1       3.478  -1.969   1.166  1.00  0.00           H  
HETATM   98  H40 UNL     1       4.564  -1.100   2.245  1.00  0.00           H  
HETATM   99  H41 UNL     1       4.612  -4.497   0.318  1.00  0.00           H  
HETATM  100  H42 UNL     1       6.869  -1.667   2.238  1.00  0.00           H  
HETATM  101  H43 UNL     1       6.109  -1.687   3.941  1.00  0.00           H  
HETATM  102  H44 UNL     1       8.279  -2.347   4.855  1.00  0.00           H  
HETATM  103  H45 UNL     1       9.007  -2.182   3.154  1.00  0.00           H  
HETATM  104  H46 UNL     1       7.963  -0.007   3.084  1.00  0.00           H  
HETATM  105  H47 UNL     1       6.356   0.332   4.580  1.00  0.00           H  
HETATM  106  H48 UNL     1       7.738   0.980   5.493  1.00  0.00           H  
HETATM  107  H49 UNL     1       7.140  -0.700   5.778  1.00  0.00           H  
HETATM  108  H50 UNL     1      -1.503  -2.776   3.517  1.00  0.00           H  
HETATM  109  H51 UNL     1      -0.450  -4.261   3.324  1.00  0.00           H  
HETATM  110  H52 UNL     1       0.184  -3.367   1.007  1.00  0.00           H  
HETATM  111  H53 UNL     1      -0.844  -1.966   1.311  1.00  0.00           H  
HETATM  112  H54 UNL     1      -1.969  -3.578  -0.207  1.00  0.00           H  
HETATM  113  H55 UNL     1      -2.844  -3.279   1.323  1.00  0.00           H  
HETATM  114  H56 UNL     1      -1.023  -5.721   0.692  1.00  0.00           H  
HETATM  115  H57 UNL     1      -2.010  -5.490   2.165  1.00  0.00           H  
HETATM  116  H58 UNL     1      -3.109  -6.943   0.596  1.00  0.00           H  
HETATM  117  H59 UNL     1      -3.057  -5.721  -0.697  1.00  0.00           H  
HETATM  118  H60 UNL     1      -4.522  -4.214   0.858  1.00  0.00           H  
HETATM  119  H61 UNL     1      -4.458  -5.566   2.039  1.00  0.00           H  
HETATM  120  H62 UNL     1      -5.754  -6.976   0.547  1.00  0.00           H  
HETATM  121  H63 UNL     1      -6.524  -5.405   0.807  1.00  0.00           H  
HETATM  122  H64 UNL     1      -4.863  -6.103  -1.686  1.00  0.00           H  
HETATM  123  H65 UNL     1      -6.664  -6.082  -1.534  1.00  0.00           H  
HETATM  124  H66 UNL     1      -6.689  -3.750  -0.994  1.00  0.00           H  
HETATM  125  H67 UNL     1      -4.916  -3.595  -1.046  1.00  0.00           H  
HETATM  126  H68 UNL     1      -6.046  -2.870  -3.183  1.00  0.00           H  
HETATM  127  H69 UNL     1      -6.776  -4.487  -3.330  1.00  0.00           H  
HETATM  128  H70 UNL     1      -2.009  -6.605  -6.165  1.00  0.00           H  
HETATM  129  H71 UNL     1      -3.583  -7.420  -6.219  1.00  0.00           H  
HETATM  130  H72 UNL     1      -1.910  -8.840  -5.136  1.00  0.00           H  
HETATM  131  H73 UNL     1      -3.119  -8.368  -3.922  1.00  0.00           H  
HETATM  132  H74 UNL     1      -1.627  -6.957  -2.754  1.00  0.00           H  
HETATM  133  H75 UNL     1      -0.590  -6.636  -4.216  1.00  0.00           H  
HETATM  134  H76 UNL     1      -0.526  -8.215  -3.367  1.00  0.00           H  
HETATM  135  H77 UNL     1      -1.601  -4.517  -4.690  1.00  0.00           H  
HETATM  136  H78 UNL     1      -3.869  -1.762  -3.383  1.00  0.00           H  
HETATM  137  H79 UNL     1      -3.010  -2.600  -2.090  1.00  0.00           H  
HETATM  138  H80 UNL     1      -2.084  -2.200  -3.560  1.00  0.00           H  
CONECT    1    2   59   60   61
CONECT    2    3   62   63
CONECT    3    4   64   65
CONECT    4    5   66   67
CONECT    5    6   68   69
CONECT    6    7    7   58
CONECT    7    8   70
CONECT    8    9   10   10
CONECT    9   71   72   73
CONECT   10   11   58
CONECT   11   12   74   75
CONECT   12   13   76   77
CONECT   13   14   78   79
CONECT   14   15   80   81
CONECT   15   16   82   83
CONECT   16   17   84   85
CONECT   17   18   86   87
CONECT   18   19   88   89
CONECT   19   20   90   91
CONECT   20   21   92   93
CONECT   21   22   22   23
CONECT   23   24
CONECT   24   25   94   95
CONECT   25   26   36   96
CONECT   26   27   97   98
CONECT   27   28
CONECT   28   29   29   30   31
CONECT   30   99
CONECT   31   32
CONECT   32   33  100  101
CONECT   33   34  102  103
CONECT   34   35  104
CONECT   35  105  106  107
CONECT   36   37
CONECT   37   38   38   39
CONECT   39   40  108  109
CONECT   40   41  110  111
CONECT   41   42  112  113
CONECT   42   43  114  115
CONECT   43   44  116  117
CONECT   44   45  118  119
CONECT   45   46  120  121
CONECT   46   47  122  123
CONECT   47   48  124  125
CONECT   48   49  126  127
CONECT   49   50   56   56
CONECT   50   51
CONECT   51   52   55   55
CONECT   52   53  128  129
CONECT   53   54  130  131
CONECT   54  132  133  134
CONECT   55   56  135
CONECT   56   57
CONECT   57  136  137  138
END

HMDB0113785
     RDKit          3D
PE-NMe(11M5/11M3)
138139  0  0  0  0  0  0  0  0999 V2000
   -5.9331    2.9893   -1.7758 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6501    3.7762   -1.8616 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7860    3.2134   -2.9952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5253    4.0181   -3.0476 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5669    3.5802   -4.1240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3747    4.4926   -4.0216 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2089    5.6866   -4.6878 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0289    6.2154   -4.3138 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6038    7.4967   -4.8052 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5501    5.2987   -3.4302 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8727    5.4336   -2.7559 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
[(2R)-3-{[11-(3-methyl-5-pentylfuran-2-yl)undecanoyl]oxy}-2-{[11-(3-methyl-5-propylfuran-2-yl)undecanoyl]oxy}propoxy][2-(methylamino)ethoxy]phosphinate	Generator
PE-NMe(MonoMe(11,5)/MonoMe(11,3))	SMPDB
MMPE(11M5/11M3)	SMPDB
MMPE(MonoMe(11,5)/MonoMe(11,3))	SMPDB
monomethylphosphatidylethanolamine	SMPDB
N-monomethylphosphatidylethanolamine	SMPDB
phosphatidyl-N-methylethanolamine	SMPDB
PE-NMe(11M5/11M3)	SMPDB

Chemical Formula

C₄₆H₈₀NO₁₀P

Average Molecular Weight

838.117

Monoisotopic Molecular Weight

837.551984778

IUPAC Name

[(2R)-3-{[11-(3-methyl-5-pentylfuran-2-yl)undecanoyl]oxy}-2-{[11-(3-methyl-5-propylfuran-2-yl)undecanoyl]oxy}propoxy][2-(methylamino)ethoxy]phosphinic acid

Traditional Name

(2R)-3-{[11-(3-methyl-5-pentylfuran-2-yl)undecanoyl]oxy}-2-{[11-(3-methyl-5-propylfuran-2-yl)undecanoyl]oxy}propoxy(2-(methylamino)ethoxy)phosphinic acid

CAS Registry Number

Not Available

SMILES

[H][C@@](COC(=O)CCCCCCCCCCC1=C(C)C=C(CCCCC)O1)(COP(O)(=O)OCCNC)OC(=O)CCCCCCCCCCC1=C(C)C=C(CCC)O1

InChI Identifier

InChI=1S/C46H80NO10P/c1-6-8-21-27-41-35-39(4)44(56-41)29-23-18-13-9-11-15-19-24-30-45(48)52-36-42(37-54-58(50,51)53-33-32-47-5)57-46(49)31-25-20-16-12-10-14-17-22-28-43-38(3)34-40(55-43)26-7-2/h34-35,42,47H,6-33,36-37H2,1-5H3,(H,50,51)/t42-/m1/s1

InChI Key

DKRFYCVSWCFPNW-HUESYALOSA-N

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as monomethylphosphatidylethanolamines. These are lipids with a structure containing a glycerol moiety linked at its terminal C3 atom to a N-methylphosphoethanolamine group, and at its C1 and C2 terminal atoms by an acyl group.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphoethanolamines

Direct Parent

Monomethylphosphatidylethanolamines

Alternative Parents

Substituents

Monomethylphosphatidylethanolamine
Furanoid fatty acid
Phosphoethanolamine
Fatty acid ester
Dialkyl phosphate
Dicarboxylic acid or derivatives
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Fatty acyl
Heteroaromatic compound
Furan
Carboxylic acid ester
Amino acid or derivatives
Oxacycle
Secondary amine
Carboxylic acid derivative
Organoheterocyclic compound
Secondary aliphatic amine
Carbonyl group
Organic oxygen compound
Organic nitrogen compound
Amine
Organonitrogen compound
Organooxygen compound
Hydrocarbon derivative
Organopnictogen compound
Organic oxide
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Not Available

Process

Naturally occurring process

Biological process

Biochemical pathway

Metabolic pathway

Phosphatidylcholine Biosynthesis PC(11M5/11M3) (PathBank: SMP0030300)

Role

Not Available

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	7.7	ALOGPS
logP	11.44	ChemAxon
logS	-5.6	ALOGPS
pKa (Strongest Acidic)	1.86	ChemAxon
pKa (Strongest Basic)	10.05	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	146.67 Å²	ChemAxon
Rotatable Bond Count	40	ChemAxon
Refractivity	232.08 m³·mol⁻¹	ChemAxon
Polarizability	102.88 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	295.521	31661259
DarkChem	[M-H]-	282.433	31661259
DeepCCS	[M+H]+	303.868	30932474
DeepCCS	[M-H]-	301.972	30932474
DeepCCS	[M-2H]-	335.212	30932474
DeepCCS	[M+Na]+	309.707	30932474
AllCCS	[M+H]+	276.4	32859911
AllCCS	[M+H-H2O]+	276.4	32859911
AllCCS	[M+NH4]+	276.5	32859911
AllCCS	[M+Na]+	276.5	32859911
AllCCS	[M-H]-	269.0	32859911
AllCCS	[M+Na-2H]-	276.2	32859911
AllCCS	[M+HCOO]-	284.0	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
PE-NMe(11M5/11M3)	[H][C@@](COC(=O)CCCCCCCCCCC1=C(C)C=C(CCCCC)O1)(COP(O)(=O)OCCNC)OC(=O)CCCCCCCCCCC1=C(C)C=C(CCC)O1	5329.0	Standard polar	33892256
PE-NMe(11M5/11M3)	[H][C@@](COC(=O)CCCCCCCCCCC1=C(C)C=C(CCCCC)O1)(COP(O)(=O)OCCNC)OC(=O)CCCCCCCCCCC1=C(C)C=C(CCC)O1	5204.9	Standard non polar	33892256
PE-NMe(11M5/11M3)	[H][C@@](COC(=O)CCCCCCCCCCC1=C(C)C=C(CCCCC)O1)(COP(O)(=O)OCCNC)OC(=O)CCCCCCCCCCC1=C(C)C=C(CCC)O1	5556.2	Semi standard non polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PE-NMe(11M5/11M3) 10V, Negative-QTOF	splash10-0fbi-6600010390-cb221869d93d2c438a83	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PE-NMe(11M5/11M3) 20V, Negative-QTOF	splash10-004r-9738010020-37f741212357c466976a	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PE-NMe(11M5/11M3) 40V, Negative-QTOF	splash10-004i-9001000000-9a7dc22440090d3a60f7	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PE-NMe(11M5/11M3) 10V, Positive-QTOF	splash10-000i-3300003090-03e097f980360303ed82	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PE-NMe(11M5/11M3) 20V, Positive-QTOF	splash10-0ab9-7200009330-a77f11b56b39dcc3a873	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PE-NMe(11M5/11M3) 40V, Positive-QTOF	splash10-0a4i-9101000000-2f5a8c752ed53aa94785	2021-09-22	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Name	SMPDB/PathBank	KEGG
Phosphatidylcholine Biosynthesis PC(11M5/11M3)		Not Available

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Showing metabocard for PE-NMe(11M5/11M3) (HMDB0113785)

MOL for HMDB0113785 (PE-NMe(11M5/11M3))

3D MOL for HMDB0113785 (PE-NMe(11M5/11M3))

3D SDF for HMDB0113785 (PE-NMe(11M5/11M3))

3D-SDF for HMDB0113785 (PE-NMe(11M5/11M3))

PDB for HMDB0113785 (PE-NMe(11M5/11M3))

3D PDB for HMDB0113785 (PE-NMe(11M5/11M3))

SMILES for HMDB0113785 (PE-NMe(11M5/11M3))

INCHI for HMDB0113785 (PE-NMe(11M5/11M3))

Structure for HMDB0113785 (PE-NMe(11M5/11M3))

3D Structure for HMDB0113785 (PE-NMe(11M5/11M3))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

MS/MS Spectra