Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-09-09 00:51:16 UTC
Update Date2022-11-30 19:25:28 UTC
HMDB IDHMDB0114098
Secondary Accession NumbersNone
Metabolite Identification
Common NamePE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z))
DescriptionPE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)) is a dimethylphosphatidylethanolamine. It is a glycerophospholipid, and it is formed by sequential methylation of phosphatidylethanolamine as part of a mechanism for biosynthesis of phosphatidylcholine. Dimethylphosphatidylethanolamines are usually found at trace levels in animal or plant tissues. They can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)), in particular, consists of one chain of gamma-linolenic acid at the C-1 position and one chain of palmitoleic acid at the C-2 position. Fatty acids containing 16, 18 and 20 carbons are the most common. Phospholipids are ubiquitous in nature. They are key components of the cell lipid bilayer and are involved in metabolism and signaling.
Structure
Data?1563873439
Synonyms
ValueSource
1-gamma-linolenoyl-2-palmitoleoyl-sn-glycero-3-phospho-N,N-dimethylethanolamineSMPDB, HMDB
PE-NMe2(18:3/16:1)SMPDB, HMDB
PE-NMe2(18:3n6/16:1n7)SMPDB, HMDB
PE-NMe2(18:3w6/16:1w7)SMPDB, HMDB
PE-NMe2(34:4)SMPDB, HMDB
DMPE(18:3(6Z,9Z,12Z)/16:1(9Z))SMPDB, HMDB
DMPE(18:3/16:1)SMPDB, HMDB
DMPE(18:3n6/16:1n7)SMPDB, HMDB
DMPE(18:3w6/16:1w7)SMPDB, HMDB
DMPE(34:4)SMPDB, HMDB
dimethylphosphatidylethanolamineSMPDB, HMDB
N-dimethylphosphatidylethanolamineSMPDB, HMDB
phosphatidyl-N-dimethylethanolamineSMPDB, HMDB
phosphatidyl-N,N-dimethylethanolamineSMPDB, HMDB
PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z))SMPDB
[2-(dimethylamino)Ethoxy]({2-[(9Z)-hexadec-9-enoyloxy]-3-[(6Z,9Z,12Z)-octadeca-6,9,12-trienoyloxy]propoxy})phosphinateGenerator, HMDB
Chemical FormulaC41H74NO8P
Average Molecular Weight740.016
Monoisotopic Molecular Weight739.515205345
IUPAC Name[2-(dimethylamino)ethoxy]({2-[(9Z)-hexadec-9-enoyloxy]-3-[(6Z,9Z,12Z)-octadeca-6,9,12-trienoyloxy]propoxy})phosphinic acid
Traditional Name2-(dimethylamino)ethoxy(2-[(9Z)-hexadec-9-enoyloxy]-3-[(6Z,9Z,12Z)-octadeca-6,9,12-trienoyloxy]propoxy)phosphinic acid
CAS Registry NumberNot Available
SMILES
[H]C(COC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(=O)OCCN(C)C)OC(=O)CCCCCCC\C=C/CCCCCC
InChI Identifier
InChI=1S/C41H74NO8P/c1-5-7-9-11-13-15-17-19-20-22-23-25-27-29-31-33-40(43)47-37-39(38-49-51(45,46)48-36-35-42(3)4)50-41(44)34-32-30-28-26-24-21-18-16-14-12-10-8-6-2/h13,15-16,18-20,23,25,39H,5-12,14,17,21-22,24,26-38H2,1-4H3,(H,45,46)/b15-13-,18-16-,20-19-,25-23-
InChI KeyKHMCHGGFURNMHJ-MHBFVRHFSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dimethylphosphatidylethanolamines. These are lipids with a structure containing a glycerol moiety linked at its terminal C3 atom to a N,N-dimethylphosphoethanolamine group, and at its C1 and C2 terminal atoms by an acyl group.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphoethanolamines
Direct ParentDimethylphosphatidylethanolamines
Alternative Parents
Substituents
  • Dimethylphosphatidylethanolamine
  • Phosphoethanolamine
  • Fatty acid ester
  • Dialkyl phosphate
  • Dicarboxylic acid or derivatives
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Tertiary aliphatic amine
  • Tertiary amine
  • Amino acid or derivatives
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Organic nitrogen compound
  • Organopnictogen compound
  • Carbonyl group
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
DispositionNot Available
Process
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP8.35ALOGPS
logP10.24ChemAxon
logS-7ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)9.09ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area111.6 ŲChemAxon
Rotatable Bond Count38ChemAxon
Refractivity214.74 m³·mol⁻¹ChemAxon
Polarizability88.99 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+287.04431661259
DarkChem[M-H]-275.75531661259
DeepCCS[M+H]+284.77730932474
DeepCCS[M-H]-282.88230932474
DeepCCS[M-2H]-316.12330932474
DeepCCS[M+Na]+290.55630932474
AllCCS[M+H]+276.532859911
AllCCS[M+H-H2O]+276.232859911
AllCCS[M+NH4]+276.732859911
AllCCS[M+Na]+276.732859911
AllCCS[M-H]-258.432859911
AllCCS[M+Na-2H]-265.432859911
AllCCS[M+HCOO]-273.132859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z))[H]C(COC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(=O)OCCN(C)C)OC(=O)CCCCCCC\C=C/CCCCCC4740.0Standard polar33892256
PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z))[H]C(COC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(=O)OCCN(C)C)OC(=O)CCCCCCC\C=C/CCCCCC4541.0Standard non polar33892256
PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z))[H]C(COC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(=O)OCCN(C)C)OC(=O)CCCCCCC\C=C/CCCCCC4957.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)),1TMS,isomer #1CCCCC/C=C\C/C=C\C/C=C\CCCCC(=O)OCC(COP(=O)(OCCN(C)C)O[Si](C)(C)C)OC(=O)CCCCCCC/C=C\CCCCCC4989.8Semi standard non polar33892256
PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)),1TMS,isomer #1CCCCC/C=C\C/C=C\C/C=C\CCCCC(=O)OCC(COP(=O)(OCCN(C)C)O[Si](C)(C)C)OC(=O)CCCCCCC/C=C\CCCCCC4359.7Standard non polar33892256
PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)),1TMS,isomer #1CCCCC/C=C\C/C=C\C/C=C\CCCCC(=O)OCC(COP(=O)(OCCN(C)C)O[Si](C)(C)C)OC(=O)CCCCCCC/C=C\CCCCCC5145.2Standard polar33892256
PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)),1TBDMS,isomer #1CCCCC/C=C\C/C=C\C/C=C\CCCCC(=O)OCC(COP(=O)(OCCN(C)C)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCC/C=C\CCCCCC5209.8Semi standard non polar33892256
PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)),1TBDMS,isomer #1CCCCC/C=C\C/C=C\C/C=C\CCCCC(=O)OCC(COP(=O)(OCCN(C)C)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCC/C=C\CCCCCC4424.8Standard non polar33892256
PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)),1TBDMS,isomer #1CCCCC/C=C\C/C=C\C/C=C\CCCCC(=O)OCC(COP(=O)(OCCN(C)C)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCC/C=C\CCCCCC5169.5Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)) 10V, Negative-QTOFsplash10-000i-0300000900-deec3fd3bfe04602bb412021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)) 20V, Negative-QTOFsplash10-002r-4491410100-c3875d529a0a8eb9cd482021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)) 40V, Negative-QTOFsplash10-00or-9760000000-4db4757abc893adf47172021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)) 10V, Positive-QTOFsplash10-0006-6200008900-f9664dc4752f5a763c9a2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)) 20V, Positive-QTOFsplash10-00di-8100019000-deb279fea2e717ede0252021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(18:3(6Z,9Z,12Z)/16:1(9Z)) 40V, Positive-QTOFsplash10-00di-4920000000-02200e731475e1fbfbe32021-09-24Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131821206
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available