Hmdb loader

Showing metabocard for PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)) (HMDB0114323)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-09-09 01:26:39 UTC
Update Date2022-11-30 19:25:39 UTC
HMDB IDHMDB0114323
Secondary Accession NumbersNone
Metabolite Identification
Common NamePE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z))
DescriptionPE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)) is a dimethylphosphatidylethanolamine. It is a glycerophospholipid, and it is formed by sequential methylation of phosphatidylethanolamine as part of a mechanism for biosynthesis of phosphatidylcholine. Dimethylphosphatidylethanolamines are usually found at trace levels in animal or plant tissues. They can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)), in particular, consists of one chain of dihomo-gamma-linolenic acid at the C-1 position and one chain of nervonic acid at the C-2 position. Fatty acids containing 16, 18 and 20 carbons are the most common. Phospholipids are ubiquitous in nature. They are key components of the cell lipid bilayer and are involved in metabolism and signaling.
Structure
Data?1563873466
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0114323 (PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)))

PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z))
  Mrv1652309161704052D          

 62 61  0  0  1  0            999 V2000
   29.3976   11.9444    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   29.4018   10.9029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.3643   11.3492    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.6161   10.9919    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   30.1970   11.2601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.0560   10.8436    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   32.0595   10.8436    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   32.0595   11.6686    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   32.0893   10.0186    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   32.8845   10.8138    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   33.6839   11.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.4494   10.8137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   35.2016   11.3100    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   35.9964   10.7913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.3976    9.6271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D MOL for HMDB0114323 (PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)))

HMDB0114323
     RDKit          3D
PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z))
155154  0  0  0  0  0  0  0  0999 V2000
   -2.4720    5.2018   -4.8457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4676    4.0920   -4.5086 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7448    2.9452   -5.4243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8544    1.7626   -5.2326 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0242    1.2105   -3.7935 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1057    0.0601   -3.6704 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8376    0.0117   -2.7627 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1069    1.0746   -1.7523 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9648    0.4722   -0.3830 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8978    0.4276    0.5263 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.4341    1.9856    1.4205 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.6452    5.8044    0.1630 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.0177    6.2017   -4.7656 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.8140    4.3680   -0.0955 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0114323 (PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)))

PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z))
  Mrv1652309161704052D          

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M  END
> <DATABASE_ID>
HMDB0114323

> <DATABASE_NAME>
hmdb

> <SMILES>
[H]C(COC(=O)CCCCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(=O)OCCN(C)C)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C51H94NO8P/c1-5-7-9-11-13-15-17-19-21-23-24-25-26-28-30-32-34-36-38-40-42-44-51(54)60-49(48-59-61(55,56)58-46-45-52(3)4)47-57-50(53)43-41-39-37-35-33-31-29-27-22-20-18-16-14-12-10-8-6-2/h14,16,19-22,29,31,49H,5-13,15,17-18,23-28,30,32-48H2,1-4H3,(H,55,56)/b16-14-,21-19-,22-20-,31-29-

> <INCHI_KEY>
SSPNKLUTTHJYKD-YUPHBJMCSA-N

> <FORMULA>
C51H94NO8P

> <MOLECULAR_WEIGHT>
880.286

> <EXACT_MASS>
879.671705989

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
155

> <JCHEM_AVERAGE_POLARIZABILITY>
110.02809518911796

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[2-(dimethylamino)ethoxy]({3-[(8Z,11Z,14Z)-icosa-8,11,14-trienoyloxy]-2-[(15Z)-tetracos-15-enoyloxy]propoxy})phosphinic acid

> <ALOGPS_LOGP>
9.86

> <JCHEM_LOGP>
14.685139249515501

> <ALOGPS_LOGS>
-7.42

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8560611745950912

> <JCHEM_PKA_STRONGEST_BASIC>
9.086822072541375

> <JCHEM_POLAR_SURFACE_AREA>
111.6

> <JCHEM_REFRACTIVITY>
260.75160000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
48

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.37e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(dimethylamino)ethoxy(3-[(8Z,11Z,14Z)-icosa-8,11,14-trienoyloxy]-2-[(15Z)-tetracos-15-enoyloxy]propoxy)phosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0114323 (PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)))

HMDB0114323
     RDKit          3D
PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z))
155154  0  0  0  0  0  0  0  0999 V2000
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 49131  1  0
 49132  1  0
 50133  1  0
 50134  1  0
 51135  1  0
 51136  1  0
 52137  1  0
 53138  1  0
 54139  1  0
 54140  1  0
 55141  1  0
 55142  1  0
 56143  1  0
 56144  1  0
 57145  1  0
 57146  1  0
 58147  1  0
 58148  1  0
 59149  1  0
 59150  1  0
 60151  1  0
 60152  1  0
 61153  1  0
 61154  1  0
 61155  1  0
M  END
Download

PDB for HMDB0114323 (PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)))

HEADER    PROTEIN                                 16-SEP-17   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z))               
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-SEP-17         0                                  
HETATM    1  H   UNK     0      54.876  22.296   0.000  0.00  0.00           H+0
HETATM    2  C   UNK     0      54.883  20.352   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      52.947  21.185   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      51.550  20.518   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      56.368  21.019   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      57.971  20.241   0.000  0.00  0.00           O+0
HETATM    7  P   UNK     0      59.844  20.241   0.000  0.00  0.00           P+0
HETATM    8  O   UNK     0      59.844  21.781   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      59.900  18.701   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      61.384  20.186   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      62.877  20.908   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      64.305  20.186   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0      65.710  21.112   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0      67.193  20.144   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      54.875  17.971   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      65.706  22.652   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      50.280  21.390   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      50.280  22.830   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      48.948  20.619   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      47.614  21.390   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      46.281  20.619   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      44.948  21.390   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      43.615  20.619   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      42.282  21.390   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      40.949  20.619   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      39.409  20.619   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      38.076  21.390   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      36.743  20.619   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      35.203  20.619   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      33.870  21.390   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      32.537  20.619   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      30.997  20.619   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      29.664  21.390   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      28.331  20.619   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      26.998  21.390   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      25.665  20.619   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      24.332  21.390   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      53.354  17.730   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      53.354  16.290   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      52.021  18.501   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      50.688  17.730   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      49.355  18.501   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      48.022  17.730   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      46.689  18.501   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      45.356  17.730   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      44.023  18.501   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      42.690  17.730   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      41.357  18.501   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      40.024  17.730   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      38.691  18.501   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      37.358  17.730   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      36.025  18.501   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      34.692  17.730   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      33.152  17.730   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      31.819  18.501   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      30.486  17.730   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      29.153  18.501   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      27.820  17.730   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      26.487  18.501   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      25.154  17.730   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      23.821  18.501   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0      22.488  17.730   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    5   15                                             
CONECT    3    2    4                                                       
CONECT    4    3   17                                                       
CONECT    5    2    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   16                                                  
CONECT   14   13                                                            
CONECT   15    2   38                                                       
CONECT   16   13                                                            
CONECT   17    4   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36                                                            
CONECT   38   15   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61                                                            
MASTER        0    0    0    0    0    0    0    0   62    0  122    0
END
Download

3D PDB for HMDB0114323 (PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)))

COMPND    HMDB0114323
HETATM    1  C1  UNL     1      -2.472   5.202  -4.846  1.00  0.00           C  
HETATM    2  C2  UNL     1      -1.468   4.092  -4.509  1.00  0.00           C  
HETATM    3  C3  UNL     1      -1.745   2.945  -5.424  1.00  0.00           C  
HETATM    4  C4  UNL     1      -0.854   1.763  -5.233  1.00  0.00           C  
HETATM    5  C5  UNL     1      -1.024   1.211  -3.793  1.00  0.00           C  
HETATM    6  C6  UNL     1      -0.106   0.060  -3.670  1.00  0.00           C  
HETATM    7  C7  UNL     1       0.838   0.012  -2.763  1.00  0.00           C  
HETATM    8  C8  UNL     1       1.107   1.075  -1.752  1.00  0.00           C  
HETATM    9  C9  UNL     1       0.965   0.472  -0.383  1.00  0.00           C  
HETATM   10  C10 UNL     1       1.898   0.428   0.526  1.00  0.00           C  
HETATM   11  C11 UNL     1       3.262   0.980   0.338  1.00  0.00           C  
HETATM   12  C12 UNL     1       3.434   1.986   1.421  1.00  0.00           C  
HETATM   13  C13 UNL     1       3.668   3.223   1.213  1.00  0.00           C  
HETATM   14  C14 UNL     1       3.808   3.878  -0.078  1.00  0.00           C  
HETATM   15  C15 UNL     1       2.723   4.989  -0.213  1.00  0.00           C  
HETATM   16  C16 UNL     1       2.881   5.739  -1.455  1.00  0.00           C  
HETATM   17  C17 UNL     1       1.946   6.773  -1.885  1.00  0.00           C  
HETATM   18  C18 UNL     1       1.585   7.902  -1.014  1.00  0.00           C  
HETATM   19  C19 UNL     1       0.764   7.537   0.214  1.00  0.00           C  
HETATM   20  C20 UNL     1      -0.562   6.985  -0.236  1.00  0.00           C  
HETATM   21  O1  UNL     1      -0.982   7.124  -1.409  1.00  0.00           O  
HETATM   22  O2  UNL     1      -1.374   6.299   0.634  1.00  0.00           O  
HETATM   23  C21 UNL     1      -2.645   5.804   0.163  1.00  0.00           C  
HETATM   24  C22 UNL     1      -3.249   5.019   1.309  1.00  0.00           C  
HETATM   25  C23 UNL     1      -4.663   4.612   1.024  1.00  0.00           C  
HETATM   26  O3  UNL     1      -5.210   3.981   2.133  1.00  0.00           O  
HETATM   27  P1  UNL     1      -6.821   3.547   1.859  1.00  0.00           P  
HETATM   28  O4  UNL     1      -7.710   4.654   2.440  1.00  0.00           O  
HETATM   29  O5  UNL     1      -7.156   3.314   0.236  1.00  0.00           O  
HETATM   30  O6  UNL     1      -7.160   2.148   2.719  1.00  0.00           O  
HETATM   31  C24 UNL     1      -7.895   1.222   1.947  1.00  0.00           C  
HETATM   32  C25 UNL     1      -8.174   0.025   2.801  1.00  0.00           C  
HETATM   33  N1  UNL     1      -6.982  -0.618   3.275  1.00  0.00           N  
HETATM   34  C26 UNL     1      -7.251  -1.756   4.105  1.00  0.00           C  
HETATM   35  C27 UNL     1      -6.139  -1.034   2.185  1.00  0.00           C  
HETATM   36  O7  UNL     1      -2.438   3.925   1.605  1.00  0.00           O  
HETATM   37  C28 UNL     1      -1.791   3.703   2.788  1.00  0.00           C  
HETATM   38  O8  UNL     1      -1.939   4.545   3.705  1.00  0.00           O  
HETATM   39  C29 UNL     1      -0.935   2.475   2.944  1.00  0.00           C  
HETATM   40  C30 UNL     1      -0.323   2.385   4.300  1.00  0.00           C  
HETATM   41  C31 UNL     1       0.573   1.219   4.481  1.00  0.00           C  
HETATM   42  C32 UNL     1      -0.170  -0.097   4.234  1.00  0.00           C  
HETATM   43  C33 UNL     1       0.802  -1.230   4.422  1.00  0.00           C  
HETATM   44  C34 UNL     1       0.152  -2.596   4.178  1.00  0.00           C  
HETATM   45  C35 UNL     1       1.212  -3.661   4.392  1.00  0.00           C  
HETATM   46  C36 UNL     1       0.652  -5.022   4.163  1.00  0.00           C  
HETATM   47  C37 UNL     1       1.764  -6.067   4.408  1.00  0.00           C  
HETATM   48  C38 UNL     1       2.909  -5.806   3.478  1.00  0.00           C  
HETATM   49  C39 UNL     1       2.559  -5.987   2.007  1.00  0.00           C  
HETATM   50  C40 UNL     1       2.243  -7.413   1.710  1.00  0.00           C  
HETATM   51  C41 UNL     1       1.886  -7.614   0.269  1.00  0.00           C  
HETATM   52  C42 UNL     1       0.659  -6.942  -0.142  1.00  0.00           C  
HETATM   53  C43 UNL     1       0.552  -6.039  -1.080  1.00  0.00           C  
HETATM   54  C44 UNL     1       1.636  -5.490  -1.928  1.00  0.00           C  
HETATM   55  C45 UNL     1       1.388  -5.866  -3.370  1.00  0.00           C  
HETATM   56  C46 UNL     1       2.386  -5.241  -4.341  1.00  0.00           C  
HETATM   57  C47 UNL     1       2.260  -3.751  -4.350  1.00  0.00           C  
HETATM   58  C48 UNL     1       3.190  -3.081  -5.308  1.00  0.00           C  
HETATM   59  C49 UNL     1       4.628  -3.335  -4.935  1.00  0.00           C  
HETATM   60  C50 UNL     1       5.548  -2.637  -5.939  1.00  0.00           C  
HETATM   61  C51 UNL     1       6.971  -2.899  -5.514  1.00  0.00           C  
HETATM   62  H1  UNL     1      -2.018   6.202  -4.766  1.00  0.00           H  
HETATM   63  H2  UNL     1      -3.367   5.153  -4.203  1.00  0.00           H  
HETATM   64  H3  UNL     1      -2.801   5.115  -5.920  1.00  0.00           H  
HETATM   65  H4  UNL     1      -1.619   3.897  -3.438  1.00  0.00           H  
HETATM   66  H5  UNL     1      -0.455   4.537  -4.655  1.00  0.00           H  
HETATM   67  H6  UNL     1      -1.590   3.324  -6.469  1.00  0.00           H  
HETATM   68  H7  UNL     1      -2.826   2.687  -5.335  1.00  0.00           H  
HETATM   69  H8  UNL     1       0.199   2.087  -5.296  1.00  0.00           H  
HETATM   70  H9  UNL     1      -1.073   0.950  -5.957  1.00  0.00           H  
HETATM   71  H10 UNL     1      -0.841   2.071  -3.161  1.00  0.00           H  
HETATM   72  H11 UNL     1      -2.077   0.828  -3.713  1.00  0.00           H  
HETATM   73  H12 UNL     1      -0.248  -0.770  -4.388  1.00  0.00           H  
HETATM   74  H13 UNL     1       1.460  -0.905  -2.784  1.00  0.00           H  
HETATM   75  H14 UNL     1       0.302   1.831  -1.800  1.00  0.00           H  
HETATM   76  H15 UNL     1       2.083   1.514  -1.923  1.00  0.00           H  
HETATM   77  H16 UNL     1      -0.029   0.038  -0.158  1.00  0.00           H  
HETATM   78  H17 UNL     1       1.631  -0.049   1.488  1.00  0.00           H  
HETATM   79  H18 UNL     1       3.425   1.320  -0.659  1.00  0.00           H  
HETATM   80  H19 UNL     1       3.953   0.123   0.589  1.00  0.00           H  
HETATM   81  H20 UNL     1       3.351   1.579   2.456  1.00  0.00           H  
HETATM   82  H21 UNL     1       3.786   3.892   2.099  1.00  0.00           H  
HETATM   83  H22 UNL     1       3.728   3.279  -0.975  1.00  0.00           H  
HETATM   84  H23 UNL     1       4.814   4.368  -0.096  1.00  0.00           H  
HETATM   85  H24 UNL     1       3.031   5.648   0.684  1.00  0.00           H  
HETATM   86  H25 UNL     1       1.791   4.534   0.052  1.00  0.00           H  
HETATM   87  H26 UNL     1       3.961   6.117  -1.478  1.00  0.00           H  
HETATM   88  H27 UNL     1       2.918   4.968  -2.301  1.00  0.00           H  
HETATM   89  H28 UNL     1       0.971   6.330  -2.267  1.00  0.00           H  
HETATM   90  H29 UNL     1       2.369   7.208  -2.855  1.00  0.00           H  
HETATM   91  H30 UNL     1       2.434   8.579  -0.730  1.00  0.00           H  
HETATM   92  H31 UNL     1       0.899   8.573  -1.614  1.00  0.00           H  
HETATM   93  H32 UNL     1       0.521   8.505   0.741  1.00  0.00           H  
HETATM   94  H33 UNL     1       1.173   6.832   0.895  1.00  0.00           H  
HETATM   95  H34 UNL     1      -2.518   5.189  -0.752  1.00  0.00           H  
HETATM   96  H35 UNL     1      -3.307   6.659  -0.097  1.00  0.00           H  
HETATM   97  H36 UNL     1      -3.304   5.733   2.180  1.00  0.00           H  
HETATM   98  H37 UNL     1      -5.279   5.491   0.698  1.00  0.00           H  
HETATM   99  H38 UNL     1      -4.626   3.929   0.134  1.00  0.00           H  
HETATM  100  H39 UNL     1      -6.396   3.015  -0.304  1.00  0.00           H  
HETATM  101  H40 UNL     1      -7.315   0.897   1.045  1.00  0.00           H  
HETATM  102  H41 UNL     1      -8.835   1.656   1.575  1.00  0.00           H  
HETATM  103  H42 UNL     1      -8.729  -0.730   2.195  1.00  0.00           H  
HETATM  104  H43 UNL     1      -8.840   0.276   3.667  1.00  0.00           H  
HETATM  105  H44 UNL     1      -6.426  -2.487   3.999  1.00  0.00           H  
HETATM  106  H45 UNL     1      -7.309  -1.487   5.188  1.00  0.00           H  
HETATM  107  H46 UNL     1      -8.193  -2.271   3.821  1.00  0.00           H  
HETATM  108  H47 UNL     1      -6.765  -1.262   1.309  1.00  0.00           H  
HETATM  109  H48 UNL     1      -5.375  -0.251   1.963  1.00  0.00           H  
HETATM  110  H49 UNL     1      -5.545  -1.926   2.497  1.00  0.00           H  
HETATM  111  H50 UNL     1      -0.248   2.349   2.115  1.00  0.00           H  
HETATM  112  H51 UNL     1      -1.667   1.627   2.870  1.00  0.00           H  
HETATM  113  H52 UNL     1       0.249   3.323   4.494  1.00  0.00           H  
HETATM  114  H53 UNL     1      -1.112   2.336   5.105  1.00  0.00           H  
HETATM  115  H54 UNL     1       1.505   1.273   3.899  1.00  0.00           H  
HETATM  116  H55 UNL     1       0.876   1.153   5.568  1.00  0.00           H  
HETATM  117  H56 UNL     1      -0.697  -0.117   3.280  1.00  0.00           H  
HETATM  118  H57 UNL     1      -0.944  -0.135   5.043  1.00  0.00           H  
HETATM  119  H58 UNL     1       1.125  -1.262   5.491  1.00  0.00           H  
HETATM  120  H59 UNL     1       1.702  -1.131   3.807  1.00  0.00           H  
HETATM  121  H60 UNL     1      -0.224  -2.574   3.134  1.00  0.00           H  
HETATM  122  H61 UNL     1      -0.741  -2.747   4.813  1.00  0.00           H  
HETATM  123  H62 UNL     1       2.032  -3.390   3.687  1.00  0.00           H  
HETATM  124  H63 UNL     1       1.523  -3.585   5.450  1.00  0.00           H  
HETATM  125  H64 UNL     1      -0.110  -5.219   4.942  1.00  0.00           H  
HETATM  126  H65 UNL     1       0.213  -5.216   3.189  1.00  0.00           H  
HETATM  127  H66 UNL     1       2.120  -5.969   5.443  1.00  0.00           H  
HETATM  128  H67 UNL     1       1.296  -7.045   4.282  1.00  0.00           H  
HETATM  129  H68 UNL     1       3.714  -6.578   3.672  1.00  0.00           H  
HETATM  130  H69 UNL     1       3.405  -4.846   3.606  1.00  0.00           H  
HETATM  131  H70 UNL     1       3.481  -5.709   1.455  1.00  0.00           H  
HETATM  132  H71 UNL     1       1.771  -5.284   1.689  1.00  0.00           H  
HETATM  133  H72 UNL     1       3.158  -8.052   1.896  1.00  0.00           H  
HETATM  134  H73 UNL     1       1.483  -7.848   2.401  1.00  0.00           H  
HETATM  135  H74 UNL     1       2.749  -7.167  -0.309  1.00  0.00           H  
HETATM  136  H75 UNL     1       1.803  -8.704   0.009  1.00  0.00           H  
HETATM  137  H76 UNL     1      -0.312  -7.194   0.374  1.00  0.00           H  
HETATM  138  H77 UNL     1      -0.476  -5.623  -1.267  1.00  0.00           H  
HETATM  139  H78 UNL     1       2.634  -5.721  -1.585  1.00  0.00           H  
HETATM  140  H79 UNL     1       1.587  -4.355  -1.919  1.00  0.00           H  
HETATM  141  H80 UNL     1       1.513  -6.992  -3.396  1.00  0.00           H  
HETATM  142  H81 UNL     1       0.377  -5.639  -3.710  1.00  0.00           H  
HETATM  143  H82 UNL     1       3.411  -5.588  -4.181  1.00  0.00           H  
HETATM  144  H83 UNL     1       2.072  -5.601  -5.354  1.00  0.00           H  
HETATM  145  H84 UNL     1       2.392  -3.255  -3.371  1.00  0.00           H  
HETATM  146  H85 UNL     1       1.211  -3.478  -4.710  1.00  0.00           H  
HETATM  147  H86 UNL     1       3.016  -1.970  -5.301  1.00  0.00           H  
HETATM  148  H87 UNL     1       3.032  -3.461  -6.356  1.00  0.00           H  
HETATM  149  H88 UNL     1       4.762  -2.928  -3.909  1.00  0.00           H  
HETATM  150  H89 UNL     1       4.839  -4.405  -4.934  1.00  0.00           H  
HETATM  151  H90 UNL     1       5.419  -3.170  -6.923  1.00  0.00           H  
HETATM  152  H91 UNL     1       5.339  -1.570  -6.008  1.00  0.00           H  
HETATM  153  H92 UNL     1       7.032  -3.955  -5.186  1.00  0.00           H  
HETATM  154  H93 UNL     1       7.704  -2.617  -6.298  1.00  0.00           H  
HETATM  155  H94 UNL     1       7.260  -2.299  -4.617  1.00  0.00           H  
CONECT    1    2   62   63   64
CONECT    2    3   65   66
CONECT    3    4   67   68
CONECT    4    5   69   70
CONECT    5    6   71   72
CONECT    6    7    7   73
CONECT    7    8   74
CONECT    8    9   75   76
CONECT    9   10   10   77
CONECT   10   11   78
CONECT   11   12   79   80
CONECT   12   13   13   81
CONECT   13   14   82
CONECT   14   15   83   84
CONECT   15   16   85   86
CONECT   16   17   87   88
CONECT   17   18   89   90
CONECT   18   19   91   92
CONECT   19   20   93   94
CONECT   20   21   21   22
CONECT   22   23
CONECT   23   24   95   96
CONECT   24   25   36   97
CONECT   25   26   98   99
CONECT   26   27
CONECT   27   28   28   29   30
CONECT   29  100
CONECT   30   31
CONECT   31   32  101  102
CONECT   32   33  103  104
CONECT   33   34   35
CONECT   34  105  106  107
CONECT   35  108  109  110
CONECT   36   37
CONECT   37   38   38   39
CONECT   39   40  111  112
CONECT   40   41  113  114
CONECT   41   42  115  116
CONECT   42   43  117  118
CONECT   43   44  119  120
CONECT   44   45  121  122
CONECT   45   46  123  124
CONECT   46   47  125  126
CONECT   47   48  127  128
CONECT   48   49  129  130
CONECT   49   50  131  132
CONECT   50   51  133  134
CONECT   51   52  135  136
CONECT   52   53   53  137
CONECT   53   54  138
CONECT   54   55  139  140
CONECT   55   56  141  142
CONECT   56   57  143  144
CONECT   57   58  145  146
CONECT   58   59  147  148
CONECT   59   60  149  150
CONECT   60   61  151  152
CONECT   61  153  154  155
END
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SMILES for HMDB0114323 (PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)))

[H]C(COC(=O)CCCCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(=O)OCCN(C)C)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC
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INCHI for HMDB0114323 (PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)))

InChI=1S/C51H94NO8P/c1-5-7-9-11-13-15-17-19-21-23-24-25-26-28-30-32-34-36-38-40-42-44-51(54)60-49(48-59-61(55,56)58-46-45-52(3)4)47-57-50(53)43-41-39-37-35-33-31-29-27-22-20-18-16-14-12-10-8-6-2/h14,16,19-22,29,31,49H,5-13,15,17-18,23-28,30,32-48H2,1-4H3,(H,55,56)/b16-14-,21-19-,22-20-,31-29-
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View in JSmolView Stereo Labels
Synonyms
ValueSource
1-dihomo-gamma-linolenoyl-2-nervonoyl-sn-glycero-3-phospho-N,N-dimethylethanolamineSMPDB, HMDB
PE-NMe2(20:3/24:1)SMPDB, HMDB
PE-NMe2(20:3n6/24:1n9)SMPDB, HMDB
PE-NMe2(20:3w6/24:1w9)SMPDB, HMDB
PE-NMe2(44:4)SMPDB, HMDB
DMPE(20:3(8Z,11Z,14Z)/24:1(15Z))SMPDB, HMDB
DMPE(20:3/24:1)SMPDB, HMDB
DMPE(20:3n6/24:1n9)SMPDB, HMDB
DMPE(20:3w6/24:1w9)SMPDB, HMDB
DMPE(44:4)SMPDB, HMDB
dimethylphosphatidylethanolamineSMPDB, HMDB
N-dimethylphosphatidylethanolamineSMPDB, HMDB
phosphatidyl-N-dimethylethanolamineSMPDB, HMDB
phosphatidyl-N,N-dimethylethanolamineSMPDB, HMDB
PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z))SMPDB
[2-(dimethylamino)Ethoxy]({3-[(8Z,11Z,14Z)-icosa-8,11,14-trienoyloxy]-2-[(15Z)-tetracos-15-enoyloxy]propoxy})phosphinateGenerator, HMDB
Chemical FormulaC51H94NO8P
Average Molecular Weight880.286
Monoisotopic Molecular Weight879.671705989
IUPAC Name[2-(dimethylamino)ethoxy]({3-[(8Z,11Z,14Z)-icosa-8,11,14-trienoyloxy]-2-[(15Z)-tetracos-15-enoyloxy]propoxy})phosphinic acid
Traditional Name2-(dimethylamino)ethoxy(3-[(8Z,11Z,14Z)-icosa-8,11,14-trienoyloxy]-2-[(15Z)-tetracos-15-enoyloxy]propoxy)phosphinic acid
CAS Registry NumberNot Available
SMILES
[H]C(COC(=O)CCCCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(=O)OCCN(C)C)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC
InChI Identifier
InChI=1S/C51H94NO8P/c1-5-7-9-11-13-15-17-19-21-23-24-25-26-28-30-32-34-36-38-40-42-44-51(54)60-49(48-59-61(55,56)58-46-45-52(3)4)47-57-50(53)43-41-39-37-35-33-31-29-27-22-20-18-16-14-12-10-8-6-2/h14,16,19-22,29,31,49H,5-13,15,17-18,23-28,30,32-48H2,1-4H3,(H,55,56)/b16-14-,21-19-,22-20-,31-29-
InChI KeySSPNKLUTTHJYKD-YUPHBJMCSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dimethylphosphatidylethanolamines. These are lipids with a structure containing a glycerol moiety linked at its terminal C3 atom to a N,N-dimethylphosphoethanolamine group, and at its C1 and C2 terminal atoms by an acyl group.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphoethanolamines
Direct ParentDimethylphosphatidylethanolamines
Alternative Parents
Substituents
  • Dimethylphosphatidylethanolamine
  • Phosphoethanolamine
  • Fatty acid ester
  • Dialkyl phosphate
  • Dicarboxylic acid or derivatives
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Tertiary aliphatic amine
  • Tertiary amine
  • Amino acid or derivatives
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Organic nitrogen compound
  • Organopnictogen compound
  • Carbonyl group
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
DispositionNot Available
Process
Naturally occurring process
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP9.86ALOGPS
logP14.69ChemAxon
logS-7.4ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)9.09ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area111.6 ŲChemAxon
Rotatable Bond Count48ChemAxon
Refractivity260.75 m³·mol⁻¹ChemAxon
Polarizability110.03 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+322.22931661259
DarkChem[M-H]-309.94231661259
DeepCCS[M+H]+308.74730932474
DeepCCS[M-H]-306.92230932474
DeepCCS[M-2H]-340.16430932474
DeepCCS[M+Na]+314.35330932474
AllCCS[M+H]+302.332859911
AllCCS[M+H-H2O]+302.232859911
AllCCS[M+NH4]+302.332859911
AllCCS[M+Na]+302.332859911
AllCCS[M-H]-299.632859911
AllCCS[M+Na-2H]-307.132859911
AllCCS[M+HCOO]-315.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z))[H]C(COC(=O)CCCCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(=O)OCCN(C)C)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC5289.8Standard polar33892256
PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z))[H]C(COC(=O)CCCCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(=O)OCCN(C)C)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC5607.4Standard non polar33892256
PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z))[H]C(COC(=O)CCCCCC\C=C/C\C=C/C\C=C/CCCCC)(COP(O)(=O)OCCN(C)C)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC5973.1Semi standard non polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)) 10V, Positive-QTOFsplash10-001i-7200000790-07d86325537fe8ea03432021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)) 20V, Positive-QTOFsplash10-00di-9100000710-28a3dc686483cf8526652021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)) 40V, Positive-QTOFsplash10-00di-4921000000-7fc367221d870a117f0d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)) 10V, Negative-QTOFsplash10-004i-0200000090-967283e083595c282e792021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)) 20V, Negative-QTOFsplash10-07fs-5539061020-d0f874c1a6bfb82426372021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PE-NMe2(20:3(8Z,11Z,14Z)/24:1(15Z)) 40V, Negative-QTOFsplash10-016r-9715100000-029ee74ecc820a9545d02021-09-23Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131821430
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available