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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2005-11-16 15:48:42 UTC
Update Date2021-09-14 15:45:46 UTC
HMDB IDHMDB0001526
Secondary Accession Numbers
  • HMDB0006951
  • HMDB01526
  • HMDB06951
Metabolite Identification
Common NameS-Acetyldihydrolipoamide
DescriptionS-Acetyldihydrolipoamide is a thio-acetylated form of dihydrolipoamide. The molecule is commonly conjugated to lysine residues. The structure shown is the free form of the molecule. Pyruvate dehydrogenase complex. The reaction is 2-(alpha-hydroxyethyl)-TPP + lipoamide => S-acetyldihydrolipoamide + TPP [Homo sapiens], occuring in mitochondrial matrix. (reactome.org). S-Acetyldihydrolipoamide is an intermediate in alanine, aspartate and pyruvate metabolism and glycolysis/gluconeogenesis (KEGG:C01136). It is converted from 2-hydroxyethyl-THPP and lipoamide via the enzyme pyruvate dehydrogenase (EC:1.2.4.1). It is then converted to acetyl-CoA via the enzyme pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) (EC:2.3.1.12).
Structure
Data?1582752207
Synonyms
ValueSource
6-S-AcetyldihydrolipoamideChEBI
6-Acetylsulfanyl-8-sulfanyl-octanamideHMDB
S-[6-Amino-6-oxo-1-(2-sulfanylethyl)hexyl] ethanethioateHMDB
S-[6-Amino-6-oxo-1-(2-sulfanylethyl)hexyl] ethanethioic acidHMDB
Chemical FormulaC10H19NO2S2
Average Molecular Weight249.393
Monoisotopic Molecular Weight249.085720237
IUPAC Name6-(acetylsulfanyl)-8-sulfanyloctanamide
Traditional NameS(6)-acetyldihydrolipoamide
CAS Registry NumberNot Available
SMILES
CC(=O)SC(CCS)CCCCC(N)=O
InChI Identifier
InChI=1S/C10H19NO2S2/c1-8(12)15-9(6-7-14)4-2-3-5-10(11)13/h9,14H,2-7H2,1H3,(H2,11,13)
InChI KeyARGXEXVCHMNAQU-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty amides. These are carboxylic acid amide derivatives of fatty acids, that are formed from a fatty acid and an amine.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty amides
Direct ParentFatty amides
Alternative Parents
Substituents
  • Fatty amide
  • Carboxamide group
  • Primary carboxylic acid amide
  • Thiocarboxylic acid ester
  • Carbothioic s-ester
  • Sulfenyl compound
  • Thiocarboxylic acid or derivatives
  • Alkylthiol
  • Carboxylic acid derivative
  • Carbonyl group
  • Organosulfur compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Biological locationRoute of exposureSource
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.036 g/LALOGPS
logP2.46ALOGPS
logP1.24ChemAxon
logS-3.8ALOGPS
pKa (Strongest Acidic)10.19ChemAxon
pKa (Strongest Basic)-0.58ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area60.16 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity67.23 m³·mol⁻¹ChemAxon
Polarizability27.66 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+156.44831661259
DarkChem[M-H]-154.14931661259
AllCCS[M+H]+155.74832859911
AllCCS[M-H]-159.98832859911
DeepCCS[M+H]+158.57830932474
DeepCCS[M-H]-155.66730932474
DeepCCS[M-2H]-192.02830932474
DeepCCS[M+Na]+167.6930932474
AllCCS[M+H]+155.732859911
AllCCS[M+H-H2O]+152.632859911
AllCCS[M+NH4]+158.732859911
AllCCS[M+Na]+159.532859911
AllCCS[M-H]-160.032859911
AllCCS[M+Na-2H]-161.332859911
AllCCS[M+HCOO]-162.932859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.4.58 minutes32390414
Predicted by Siyang on May 30, 202212.8986 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.53 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid27.7 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2265.8 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid330.5 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid151.7 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid193.0 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid126.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid465.5 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid557.2 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)121.0 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1086.2 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid369.5 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1203.3 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid341.5 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid309.1 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate374.0 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA369.3 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water87.6 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
S-AcetyldihydrolipoamideCC(=O)SC(CCS)CCCCC(N)=O3328.3Standard polar33892256
S-AcetyldihydrolipoamideCC(=O)SC(CCS)CCCCC(N)=O1941.7Standard non polar33892256
S-AcetyldihydrolipoamideCC(=O)SC(CCS)CCCCC(N)=O2228.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
S-Acetyldihydrolipoamide,1TMS,isomer #1CC(=O)SC(CCCCC(N)=O)CCS[Si](C)(C)C2254.9Semi standard non polar33892256
S-Acetyldihydrolipoamide,1TMS,isomer #1CC(=O)SC(CCCCC(N)=O)CCS[Si](C)(C)C2164.7Standard non polar33892256
S-Acetyldihydrolipoamide,1TMS,isomer #1CC(=O)SC(CCCCC(N)=O)CCS[Si](C)(C)C3531.7Standard polar33892256
S-Acetyldihydrolipoamide,1TMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N[Si](C)(C)C2185.9Semi standard non polar33892256
S-Acetyldihydrolipoamide,1TMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N[Si](C)(C)C2111.8Standard non polar33892256
S-Acetyldihydrolipoamide,1TMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N[Si](C)(C)C2864.9Standard polar33892256
S-Acetyldihydrolipoamide,2TMS,isomer #1CC(=O)SC(CCCCC(=O)N[Si](C)(C)C)CCS[Si](C)(C)C2334.2Semi standard non polar33892256
S-Acetyldihydrolipoamide,2TMS,isomer #1CC(=O)SC(CCCCC(=O)N[Si](C)(C)C)CCS[Si](C)(C)C2347.7Standard non polar33892256
S-Acetyldihydrolipoamide,2TMS,isomer #1CC(=O)SC(CCCCC(=O)N[Si](C)(C)C)CCS[Si](C)(C)C2849.4Standard polar33892256
S-Acetyldihydrolipoamide,2TMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N([Si](C)(C)C)[Si](C)(C)C2244.4Semi standard non polar33892256
S-Acetyldihydrolipoamide,2TMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N([Si](C)(C)C)[Si](C)(C)C2232.6Standard non polar33892256
S-Acetyldihydrolipoamide,2TMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N([Si](C)(C)C)[Si](C)(C)C2776.2Standard polar33892256
S-Acetyldihydrolipoamide,3TMS,isomer #1CC(=O)SC(CCCCC(=O)N([Si](C)(C)C)[Si](C)(C)C)CCS[Si](C)(C)C2418.0Semi standard non polar33892256
S-Acetyldihydrolipoamide,3TMS,isomer #1CC(=O)SC(CCCCC(=O)N([Si](C)(C)C)[Si](C)(C)C)CCS[Si](C)(C)C2446.9Standard non polar33892256
S-Acetyldihydrolipoamide,3TMS,isomer #1CC(=O)SC(CCCCC(=O)N([Si](C)(C)C)[Si](C)(C)C)CCS[Si](C)(C)C2622.2Standard polar33892256
S-Acetyldihydrolipoamide,1TBDMS,isomer #1CC(=O)SC(CCCCC(N)=O)CCS[Si](C)(C)C(C)(C)C2499.9Semi standard non polar33892256
S-Acetyldihydrolipoamide,1TBDMS,isomer #1CC(=O)SC(CCCCC(N)=O)CCS[Si](C)(C)C(C)(C)C2400.1Standard non polar33892256
S-Acetyldihydrolipoamide,1TBDMS,isomer #1CC(=O)SC(CCCCC(N)=O)CCS[Si](C)(C)C(C)(C)C3524.1Standard polar33892256
S-Acetyldihydrolipoamide,1TBDMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N[Si](C)(C)C(C)(C)C2411.5Semi standard non polar33892256
S-Acetyldihydrolipoamide,1TBDMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N[Si](C)(C)C(C)(C)C2329.3Standard non polar33892256
S-Acetyldihydrolipoamide,1TBDMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N[Si](C)(C)C(C)(C)C2924.4Standard polar33892256
S-Acetyldihydrolipoamide,2TBDMS,isomer #1CC(=O)SC(CCCCC(=O)N[Si](C)(C)C(C)(C)C)CCS[Si](C)(C)C(C)(C)C2838.1Semi standard non polar33892256
S-Acetyldihydrolipoamide,2TBDMS,isomer #1CC(=O)SC(CCCCC(=O)N[Si](C)(C)C(C)(C)C)CCS[Si](C)(C)C(C)(C)C2744.9Standard non polar33892256
S-Acetyldihydrolipoamide,2TBDMS,isomer #1CC(=O)SC(CCCCC(=O)N[Si](C)(C)C(C)(C)C)CCS[Si](C)(C)C(C)(C)C2906.4Standard polar33892256
S-Acetyldihydrolipoamide,2TBDMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C2712.2Semi standard non polar33892256
S-Acetyldihydrolipoamide,2TBDMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C2638.2Standard non polar33892256
S-Acetyldihydrolipoamide,2TBDMS,isomer #2CC(=O)SC(CCS)CCCCC(=O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C2888.5Standard polar33892256
S-Acetyldihydrolipoamide,3TBDMS,isomer #1CC(=O)SC(CCCCC(=O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)CCS[Si](C)(C)C(C)(C)C3150.7Semi standard non polar33892256
S-Acetyldihydrolipoamide,3TBDMS,isomer #1CC(=O)SC(CCCCC(=O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)CCS[Si](C)(C)C(C)(C)C3015.8Standard non polar33892256
S-Acetyldihydrolipoamide,3TBDMS,isomer #1CC(=O)SC(CCCCC(=O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)CCS[Si](C)(C)C(C)(C)C2858.2Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - S-Acetyldihydrolipoamide GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-9310000000-0f17192770cd2eed81e22017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - S-Acetyldihydrolipoamide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 10V, Positive-QTOFsplash10-0pc0-0390000000-f4f7a106ce708d65c83c2015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 20V, Positive-QTOFsplash10-001i-5590000000-4df718aaa87a6fbbd7952015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 40V, Positive-QTOFsplash10-03k9-4900000000-d4adb6f2a43bf9e5b1b92015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 10V, Negative-QTOFsplash10-0a4j-2290000000-229a9fb285c737cc2c9f2015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 20V, Negative-QTOFsplash10-0a4l-6590000000-6678ae77fcef8223dec92015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 40V, Negative-QTOFsplash10-0006-9000000000-5de0a80883e527f54fbb2015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 10V, Positive-QTOFsplash10-0uxr-0490000000-9d67c94cbf8b72b1f3122021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 20V, Positive-QTOFsplash10-01x0-1940000000-dafc5697832c093d72242021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 40V, Positive-QTOFsplash10-06tf-9600000000-853bdf0beb7957a18af32021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 10V, Negative-QTOFsplash10-03di-1390000000-2259a6df55463871f9882021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 20V, Negative-QTOFsplash10-00di-5950000000-5706c02348bf4fe9bb552021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - S-Acetyldihydrolipoamide 40V, Negative-QTOFsplash10-00dl-9200000000-a65938d00822602054fb2021-09-24Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-22Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB022671
KNApSAcK IDNot Available
Chemspider ID1046
KEGG Compound IDC01136
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN ID6299
PubChem Compound1076
PDB IDNot Available
ChEBI ID16807
Food Biomarker OntologyNot Available
VMH IDADHLAM
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Yang YS, Frey PA: Dihydrolipoyl transacetylase of Escherichia coli. Formation of 8-S-acetyldihydrolipoamide. Biochemistry. 1986 Dec 16;25(25):8173-8. [PubMed:3101735 ]
  2. Butterworth PJ, Tsai CS, Eley MH, Roche TE, Reed LJ: A kinetic study of dihydrolipoyl transacetylase from bovine kidney. J Biol Chem. 1975 Mar 10;250(5):1921-5. [PubMed:1089667 ]
  3. O'Connor TP, Roche TE, Paukstelis JV: 13C nuclear magnetic resonance study of the pyruvate dehydrogenase-catalyzed acetylation of dihydrolipoamide. J Biol Chem. 1982 Mar 25;257(6):3110-2. [PubMed:6801041 ]

Enzymes

General function:
Involved in oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Specific function:
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2), and thereby links the glycolytic pathway to the tricarboxylic cycle.
Gene Name:
PDHA1
Uniprot ID:
P08559
Molecular weight:
43295.255
General function:
Involved in acyltransferase activity
Specific function:
Not Available
Gene Name:
DLAT
Uniprot ID:
Q86YI5
Molecular weight:
68996.0