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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-08-28 23:57:11 UTC

Update Date

2021-09-26 22:48:54 UTC

HMDB ID

HMDB0242271

Secondary Accession Numbers

None

Metabolite Identification

Common Name

(+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid

Description

(+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid belongs to the class of organic compounds known as hydroxyeicosapentaenoic acids. These are eicosanoic acids with an attached hydroxyl group and five CC double bonds. Based on a literature review very few articles have been published on (+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). (+/-)-8-hydroxy-5z,9e,11z,14z,17z-eicosapentaenoic acid is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically (+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0242271
     RDKit          3D
(+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid
 53 52  0  0  0  0  0  0  0  0999 V2000
   -6.3587   -2.6831   -0.2170 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4872   -1.1673   -0.0478 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4628   -0.6553    0.8452 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5602    0.2248    0.5330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4168    0.8710   -0.8150 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0784    0.5285   -1.2962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1408    1.3699   -1.5947 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2498    2.8397   -1.5044 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2174    3.3173   -0.5383 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4171    2.4633    0.0687 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5921    2.9288    1.0120 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3846    2.0729    1.6118 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2270    0.6285    1.3059 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0219    0.1195    1.7854 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3563   -0.1023    2.0105 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3236   -1.5437    1.7935 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2973   -2.2101    1.2310 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5857   -1.7063    0.7102 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7305   -1.9967   -0.7746 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0245   -1.5027   -1.3377 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1306   -0.0462   -1.2413 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1990    0.6772   -0.8395 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3158    0.6233   -1.6052 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6794   -2.9218   -1.0485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3465   -3.1722   -0.3392 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9492   -3.0535    0.7630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5321   -1.0436    0.3734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4975   -0.7304   -1.0365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4447   -1.0441    1.8799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8070    0.5645    1.2860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5207    1.9463   -0.6576 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1495    0.4870   -1.5583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8677   -0.5563   -1.4084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1476    1.0080   -1.9653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2154    3.1996   -1.1186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0538    3.3237   -2.5026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1277    4.3743   -0.3367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4923    1.3880   -0.1161 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7036    3.9777    1.2315 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1274    2.4322    2.3083 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3219    0.4683    0.2141 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1240   -0.0988    2.7470 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2221    0.0718    3.1208 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2811    0.3572    1.6482 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4233   -2.1199    2.1218 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1463   -3.3135    1.1233 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4531   -2.2174    1.2544 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7212   -0.6420    0.8742 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9142   -1.5082   -1.3546 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6807   -3.0915   -0.9505 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0867   -1.8589   -2.3948 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8333   -1.9768   -0.7260 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9924    0.6993   -0.8385 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  2  3
 10 11  1  0
 11 12  2  3
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  2  3
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 21 23  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  2 27  1  0
  2 28  1  0
  3 29  1  0
  4 30  1  0
  5 31  1  0
  5 32  1  0
  6 33  1  0
  7 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
 10 38  1  0
 11 39  1  0
 12 40  1  0
 13 41  1  0
 14 42  1  0
 15 43  1  0
 15 44  1  0
 16 45  1  0
 17 46  1  0
 18 47  1  0
 18 48  1  0
 19 49  1  0
 19 50  1  0
 20 51  1  0
 20 52  1  0
 23 53  1  0
M  END


  Mrv1652308292102072D          

 23 22  0  0  0  0            999 V2000
   -5.9072    4.8395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6217    4.4270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6217    3.6020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3362    3.1895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3362    2.3645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6217    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6217    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9072    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1927    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4783    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7638    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0493    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6204    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.9520    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  4  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  4  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  4  0  0  0
  9 10  2  0  0  0  0
 11 10  1  4  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 15 14  1  4  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 13 23  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0242271

> <DATABASE_NAME>
hmdb

> <SMILES>
CCC=CCC=CCC=CC=CC(O)CC=CCCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H30O3/c1-2-3-4-5-6-7-8-9-10-13-16-19(21)17-14-11-12-15-18-20(22)23/h3-4,6-7,9-11,13-14,16,19,21H,2,5,8,12,15,17-18H2,1H3,(H,22,23)

> <INCHI_KEY>
WLOUCHKFBGGNEB-UHFFFAOYSA-N

> <FORMULA>
C20H30O3

> <MOLECULAR_WEIGHT>
318.457

> <EXACT_MASS>
318.219494826

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
38.71630944427278

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
8-hydroxyicosa-5,9,11,14,17-pentaenoic acid

> <ALOGPS_LOGP>
5.53

> <JCHEM_LOGP>
4.994438087333332

> <ALOGPS_LOGS>
-5.02

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
17.720826396228208

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.676900732086441

> <JCHEM_PKA_STRONGEST_BASIC>
-1.6087107941991405

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
102.58610000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.01e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
8-hydroxyicosa-5,9,11,14,17-pentaenoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0242271
     RDKit          3D
(+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid
 53 52  0  0  0  0  0  0  0  0999 V2000
   -6.3587   -2.6831   -0.2170 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4872   -1.1673   -0.0478 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4628   -0.6553    0.8452 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5602    0.2248    0.5330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4168    0.8710   -0.8150 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0784    0.5285   -1.2962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1408    1.3699   -1.5947 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2498    2.8397   -1.5044 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2174    3.3173   -0.5383 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4171    2.4633    0.0687 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5921    2.9288    1.0120 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3846    2.0729    1.6118 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2270    0.6285    1.3059 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0219    0.1195    1.7854 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3563   -0.1023    2.0105 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3236   -1.5437    1.7935 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2973   -2.2101    1.2310 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5857   -1.7063    0.7102 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7305   -1.9967   -0.7746 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0245   -1.5027   -1.3377 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1306   -0.0462   -1.2413 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1990    0.6772   -0.8395 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3158    0.6233   -1.6052 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6794   -2.9218   -1.0485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3465   -3.1722   -0.3392 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9492   -3.0535    0.7630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5321   -1.0436    0.3734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4975   -0.7304   -1.0365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4447   -1.0441    1.8799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8070    0.5645    1.2860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5207    1.9463   -0.6576 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1495    0.4870   -1.5583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8677   -0.5563   -1.4084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1476    1.0080   -1.9653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2154    3.1996   -1.1186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0538    3.3237   -2.5026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1277    4.3743   -0.3367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4923    1.3880   -0.1161 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7036    3.9777    1.2315 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1274    2.4322    2.3083 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3219    0.4683    0.2141 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1240   -0.0988    2.7470 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2221    0.0718    3.1208 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2811    0.3572    1.6482 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4233   -2.1199    2.1218 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1463   -3.3135    1.1233 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4531   -2.2174    1.2544 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7212   -0.6420    0.8742 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9142   -1.5082   -1.3546 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6807   -3.0915   -0.9505 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0867   -1.8589   -2.3948 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8333   -1.9768   -0.7260 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9924    0.6993   -0.8385 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  2  3
 10 11  1  0
 11 12  2  3
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  2  3
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 21 23  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  2 27  1  0
  2 28  1  0
  3 29  1  0
  4 30  1  0
  5 31  1  0
  5 32  1  0
  6 33  1  0
  7 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
 10 38  1  0
 11 39  1  0
 12 40  1  0
 13 41  1  0
 14 42  1  0
 15 43  1  0
 15 44  1  0
 16 45  1  0
 17 46  1  0
 18 47  1  0
 18 48  1  0
 19 49  1  0
 19 50  1  0
 20 51  1  0
 20 52  1  0
 23 53  1  0
M  END

HEADER    PROTEIN                                 29-AUG-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-AUG-21         0                                  
HETATM    1  C   UNK     0     -11.027   9.034   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -12.360   8.264   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -12.360   6.724   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -13.694   5.954   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -13.694   4.414   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -12.360   3.644   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -12.360   2.104   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -11.027   1.334   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -9.693   2.104   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -8.359   1.334   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -7.026   2.104   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.692   1.334   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -4.358   2.104   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.025   1.334   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.691   2.104   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.357   1.334   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.977   1.334   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       6.311   2.104   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       4.977  -0.206   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      -4.358   3.644   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   23                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23   13                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   44    0
END

COMPND    HMDB0242271
HETATM    1  C1  UNL     1      -6.359  -2.683  -0.217  1.00  0.00           C  
HETATM    2  C2  UNL     1      -6.487  -1.167  -0.048  1.00  0.00           C  
HETATM    3  C3  UNL     1      -5.463  -0.655   0.845  1.00  0.00           C  
HETATM    4  C4  UNL     1      -4.560   0.225   0.533  1.00  0.00           C  
HETATM    5  C5  UNL     1      -4.417   0.871  -0.815  1.00  0.00           C  
HETATM    6  C6  UNL     1      -3.078   0.528  -1.296  1.00  0.00           C  
HETATM    7  C7  UNL     1      -2.141   1.370  -1.595  1.00  0.00           C  
HETATM    8  C8  UNL     1      -2.250   2.840  -1.504  1.00  0.00           C  
HETATM    9  C9  UNL     1      -1.217   3.317  -0.538  1.00  0.00           C  
HETATM   10  C10 UNL     1      -0.417   2.463   0.069  1.00  0.00           C  
HETATM   11  C11 UNL     1       0.592   2.929   1.012  1.00  0.00           C  
HETATM   12  C12 UNL     1       1.385   2.073   1.612  1.00  0.00           C  
HETATM   13  C13 UNL     1       1.227   0.629   1.306  1.00  0.00           C  
HETATM   14  O1  UNL     1       0.022   0.119   1.785  1.00  0.00           O  
HETATM   15  C14 UNL     1       2.356  -0.102   2.011  1.00  0.00           C  
HETATM   16  C15 UNL     1       2.324  -1.544   1.794  1.00  0.00           C  
HETATM   17  C16 UNL     1       3.297  -2.210   1.231  1.00  0.00           C  
HETATM   18  C17 UNL     1       4.586  -1.706   0.710  1.00  0.00           C  
HETATM   19  C18 UNL     1       4.731  -1.997  -0.775  1.00  0.00           C  
HETATM   20  C19 UNL     1       6.024  -1.503  -1.338  1.00  0.00           C  
HETATM   21  C20 UNL     1       6.131  -0.046  -1.241  1.00  0.00           C  
HETATM   22  O2  UNL     1       5.199   0.677  -0.840  1.00  0.00           O  
HETATM   23  O3  UNL     1       7.316   0.623  -1.605  1.00  0.00           O  
HETATM   24  H1  UNL     1      -5.679  -2.922  -1.048  1.00  0.00           H  
HETATM   25  H2  UNL     1      -7.346  -3.172  -0.339  1.00  0.00           H  
HETATM   26  H3  UNL     1      -5.949  -3.054   0.763  1.00  0.00           H  
HETATM   27  H4  UNL     1      -7.532  -1.044   0.373  1.00  0.00           H  
HETATM   28  H5  UNL     1      -6.498  -0.730  -1.036  1.00  0.00           H  
HETATM   29  H6  UNL     1      -5.445  -1.044   1.880  1.00  0.00           H  
HETATM   30  H7  UNL     1      -3.807   0.564   1.286  1.00  0.00           H  
HETATM   31  H8  UNL     1      -4.521   1.946  -0.658  1.00  0.00           H  
HETATM   32  H9  UNL     1      -5.149   0.487  -1.558  1.00  0.00           H  
HETATM   33  H10 UNL     1      -2.868  -0.556  -1.408  1.00  0.00           H  
HETATM   34  H11 UNL     1      -1.148   1.008  -1.965  1.00  0.00           H  
HETATM   35  H12 UNL     1      -3.215   3.200  -1.119  1.00  0.00           H  
HETATM   36  H13 UNL     1      -2.054   3.324  -2.503  1.00  0.00           H  
HETATM   37  H14 UNL     1      -1.128   4.374  -0.337  1.00  0.00           H  
HETATM   38  H15 UNL     1      -0.492   1.388  -0.116  1.00  0.00           H  
HETATM   39  H16 UNL     1       0.704   3.978   1.231  1.00  0.00           H  
HETATM   40  H17 UNL     1       2.127   2.432   2.308  1.00  0.00           H  
HETATM   41  H18 UNL     1       1.322   0.468   0.214  1.00  0.00           H  
HETATM   42  H19 UNL     1       0.124  -0.099   2.747  1.00  0.00           H  
HETATM   43  H20 UNL     1       2.222   0.072   3.121  1.00  0.00           H  
HETATM   44  H21 UNL     1       3.281   0.357   1.648  1.00  0.00           H  
HETATM   45  H22 UNL     1       1.423  -2.120   2.122  1.00  0.00           H  
HETATM   46  H23 UNL     1       3.146  -3.313   1.123  1.00  0.00           H  
HETATM   47  H24 UNL     1       5.453  -2.217   1.254  1.00  0.00           H  
HETATM   48  H25 UNL     1       4.721  -0.642   0.874  1.00  0.00           H  
HETATM   49  H26 UNL     1       3.914  -1.508  -1.355  1.00  0.00           H  
HETATM   50  H27 UNL     1       4.681  -3.092  -0.951  1.00  0.00           H  
HETATM   51  H28 UNL     1       6.087  -1.859  -2.395  1.00  0.00           H  
HETATM   52  H29 UNL     1       6.833  -1.977  -0.726  1.00  0.00           H  
HETATM   53  H30 UNL     1       7.992   0.699  -0.838  1.00  0.00           H  
CONECT    1    2   24   25   26
CONECT    2    3   27   28
CONECT    3    4    4   29
CONECT    4    5   30
CONECT    5    6   31   32
CONECT    6    7    7   33
CONECT    7    8   34
CONECT    8    9   35   36
CONECT    9   10   10   37
CONECT   10   11   38
CONECT   11   12   12   39
CONECT   12   13   40
CONECT   13   14   15   41
CONECT   14   42
CONECT   15   16   43   44
CONECT   16   17   17   45
CONECT   17   18   46
CONECT   18   19   47   48
CONECT   19   20   49   50
CONECT   20   21   51   52
CONECT   21   22   22   23
CONECT   23   53
END

HMDB0242271
     RDKit          3D
(+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid
 53 52  0  0  0  0  0  0  0  0999 V2000
   -6.3587   -2.6831   -0.2170 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4872   -1.1673   -0.0478 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4628   -0.6553    0.8452 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5602    0.2248    0.5330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4168    0.8710   -0.8150 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0784    0.5285   -1.2962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1408    1.3699   -1.5947 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2498    2.8397   -1.5044 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2174    3.3173   -0.5383 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4171    2.4633    0.0687 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5921    2.9288    1.0120 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3846    2.0729    1.6118 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2270    0.6285    1.3059 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0219    0.1195    1.7854 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3563   -0.1023    2.0105 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3236   -1.5437    1.7935 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2973   -2.2101    1.2310 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5857   -1.7063    0.7102 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7305   -1.9967   -0.7746 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0245   -1.5027   -1.3377 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1306   -0.0462   -1.2413 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1990    0.6772   -0.8395 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3158    0.6233   -1.6052 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6794   -2.9218   -1.0485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3465   -3.1722   -0.3392 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9492   -3.0535    0.7630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5321   -1.0436    0.3734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4975   -0.7304   -1.0365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4447   -1.0441    1.8799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8070    0.5645    1.2860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5207    1.9463   -0.6576 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1495    0.4870   -1.5583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8677   -0.5563   -1.4084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1476    1.0080   -1.9653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2154    3.1996   -1.1186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0538    3.3237   -2.5026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1277    4.3743   -0.3367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4923    1.3880   -0.1161 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7036    3.9777    1.2315 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1274    2.4322    2.3083 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3219    0.4683    0.2141 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1240   -0.0988    2.7470 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2221    0.0718    3.1208 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2811    0.3572    1.6482 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4233   -2.1199    2.1218 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1463   -3.3135    1.1233 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4531   -2.2174    1.2544 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7212   -0.6420    0.8742 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9142   -1.5082   -1.3546 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6807   -3.0915   -0.9505 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0867   -1.8589   -2.3948 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8333   -1.9768   -0.7260 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9924    0.6993   -0.8385 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  2  3
 10 11  1  0
 11 12  2  3
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  2  3
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 21 23  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  2 27  1  0
  2 28  1  0
  3 29  1  0
  4 30  1  0
  5 31  1  0
  5 32  1  0
  6 33  1  0
  7 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
 10 38  1  0
 11 39  1  0
 12 40  1  0
 13 41  1  0
 14 42  1  0
 15 43  1  0
 15 44  1  0
 16 45  1  0
 17 46  1  0
 18 47  1  0
 18 48  1  0
 19 49  1  0
 19 50  1  0
 20 51  1  0
 20 52  1  0
 23 53  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(+/-)-8-hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoate	Generator

Chemical Formula

C₂₀H₃₀O₃

Average Molecular Weight

318.457

Monoisotopic Molecular Weight

318.219494826

IUPAC Name

8-hydroxyicosa-5,9,11,14,17-pentaenoic acid

Traditional Name

8-hydroxyicosa-5,9,11,14,17-pentaenoic acid

CAS Registry Number

Not Available

SMILES

CCC=CCC=CCC=CC=CC(O)CC=CCCCC(O)=O

InChI Identifier

InChI=1S/C20H30O3/c1-2-3-4-5-6-7-8-9-10-13-16-19(21)17-14-11-12-15-18-20(22)23/h3-4,6-7,9-11,13-14,16,19,21H,2,5,8,12,15,17-18H2,1H3,(H,22,23)

InChI Key

WLOUCHKFBGGNEB-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxyeicosapentaenoic acids. These are eicosanoic acids with an attached hydroxyl group and five CC double bonds.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Hydroxyeicosapentaenoic acids

Alternative Parents

Substituents

Hydroxyeicosapentaenoic acid
Long-chain fatty acid
Hydroxy fatty acid
Fatty acid
Unsaturated fatty acid
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Organic oxide
Organic oxygen compound
Alcohol
Hydrocarbon derivative
Carbonyl group
Organooxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	5.53	ALOGPS
logP	4.99	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	4.68	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	102.59 m³·mol⁻¹	ChemAxon
Polarizability	38.72 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	173.8	30932474
DeepCCS	[M-H]-	171.442	30932474
DeepCCS	[M-2H]-	204.332	30932474
DeepCCS	[M+Na]+	179.893	30932474
AllCCS	[M+H]+	185.6	32859911
AllCCS	[M+H-H2O]+	182.6	32859911
AllCCS	[M+NH4]+	188.3	32859911
AllCCS	[M+Na]+	189.1	32859911
AllCCS	[M-H]-	183.1	32859911
AllCCS	[M+Na-2H]-	184.7	32859911
AllCCS	[M+HCOO]-	186.7	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.	5.74 minutes	32390414
Predicted by Siyang on May 30, 2022	20.7146 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	0.95 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	3082.7 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	401.3 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	189.0 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	288.3 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	533.0 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	941.9 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	525.0 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	91.4 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1979.4 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	706.8 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1635.8 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	696.5 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	490.1 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	349.9 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	453.8 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.7 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid	CCC=CCC=CCC=CC=CC(O)CC=CCCCC(O)=O	4295.6	Standard polar	33892256
(+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid	CCC=CCC=CCC=CC=CC(O)CC=CCCCC(O)=O	2403.7	Standard non polar	33892256
(+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid	CCC=CCC=CCC=CC=CC(O)CC=CCCCC(O)=O	2566.7	Semi standard non polar	33892256

Spectra

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

21236208

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53394250

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for (+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid (HMDB0242271)

MOL for HMDB0242271 ((+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid)

3D MOL for HMDB0242271 ((+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid)

3D SDF for HMDB0242271 ((+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid)

3D-SDF for HMDB0242271 ((+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid)

PDB for HMDB0242271 ((+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid)

3D PDB for HMDB0242271 ((+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid)

SMILES for HMDB0242271 ((+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid)

INCHI for HMDB0242271 ((+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid)

Structure for HMDB0242271 ((+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid)

3D Structure for HMDB0242271 ((+/-)-8-Hydroxy-5Z,9E,11Z,14Z,17Z-eicosapentaenoic acid)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized