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Record Information

Version

5.0

Status

Predicted

Creation Date

2021-08-30 17:17:31 UTC

Update Date

2022-11-15 17:47:01 UTC

HMDB ID

HMDB0242383

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Cholylcitrulline

Description

Cholylcitrulline belongs to a class of molecules known as bile acid-amino acid conjugates. These are bile acid conjugates that consist of a primary bile acid such as cholic acid, doxycholic acid and chenodeoxycholic acid, conjugated to an amino acid. Cholylcitrulline consists of the bile acid cholic acid conjugated to the amino acid Citrulline conjugated at the C24 acyl site.Bile acids play an important role in regulating various physiological systems, such as fat digestion, cholesterol metabolism, vitamin absorption, liver function, and enterohepatic circulation through their combined signaling, detergent, and antimicrobial mechanisms (PMID: 34127070 ). Bile acids also act as detergents in the gut and support the absorption of fats through the intestinal membrane. These same properties allow for the disruption of bacterial membranes, thereby allowing them to serve a bacteriocidal or bacteriostatic function. In humans (and other mammals) bile acids are normally conjugated with the amino acids glycine and taurine by the liver. This conjugation catalyzed by two liver enzymes, bile acid CoA ligase (BAL) and bile acid CoA: amino acid N-acyltransferase (BAT). Glycine and taurine bound BAs are also referred to as bile salts due to their decreased pKa and complete ionization resulting in these compounds being present as anions in vivo. Unlike glycine and taurine-conjugated bile acids, these recently discovered bile acids, such as Cholylcitrulline, are produced by the gut microbiota, making them secondary bile acids (PMID: 32103176 ) or microbially conjugated bile acids (MCBAs) (PMID: 34127070 ). Evidence suggests that these bile acid-amino acid conjugates are produced by microbes belonging to Clostridia species (PMID: 32103176 ). These unusual bile acid-amino acid conjugates are found in higher frequency in patients with inflammatory bowel disease (IBD), cystic fibrosis (CF) and in infants (PMID: 32103176 ). Cholylcitrulline appears to act as an agonist for the farnesoid X receptor (FXR) and it can also lead to reduced expression of bile acid synthesis genes (PMID: 32103176 ). It currently appears that microbially conjugated bile acids (MCBAs) or amino acid-bile acid conjugates are only conjugated to cholic acid, deoxycholic acid and chenodeoxycholic acid (PMID: 34127070 ). It has been estimated that if microbial conjugation of bile acids is very promiscuous and occurs for all potential oxidized, epimerized, and dehydroxylated states of each hydroxyl group present on cholic acid (C3, C7, C12) in addition to ring orientation, the total number of potential human bile acid conjugates could be over 2800 (PMID: 34127070 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652308302119272D          

 40 43  0  0  0  0            999 V2000
   11.0730   -3.4133    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7874   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7874   -4.6508    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.5019   -3.4133    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.2164   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9309   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6453   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3598   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0743   -3.8258    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   16.7887   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7887   -2.5883    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.5032   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2177   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9322   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9322   -4.6508    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6466   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7329   -2.5929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5398   -2.4213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.9523   -3.1358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.7593   -3.3073    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.3113   -2.6942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0564   -1.9096    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1183   -2.8658    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.3732   -3.6504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.1802   -3.8219    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.4352   -4.6065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.2421   -4.7781    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.8831   -5.2196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.0762   -5.0481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.8212   -4.2635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.2692   -4.8766    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0142   -4.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.4622   -4.7050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.6552   -4.5335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.1032   -5.1466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.4003   -3.7489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7872   -4.3009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3598   -2.5883    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0743   -2.1758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.6453   -2.1758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 24 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 20 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 34 36  1  0  0  0  0
 16 36  1  0  0  0  0
 19 36  1  0  0  0  0
 36 37  1  0  0  0  0
  8 38  1  0  0  0  0
 38 39  2  0  0  0  0
 38 40  1  0  0  0  0
M  END

HMDB0242383
     RDKit          3D
Cholylcitrulline
 91 94  0  0  0  0  0  0  0  0999 V2000
    1.8136   -1.9724   -0.7122 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9175   -1.5327    0.3885 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5535   -0.8341    1.5471 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5572    0.2707    1.2394 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8765   -0.3007    0.9879 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9243   -1.6009    1.3976 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0715    0.1055    0.4615 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.1869   -0.9048    0.4349 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9971   -0.9328   -0.7651 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9653    0.1460   -1.0273 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3167   -0.4257   -0.3417 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1311    0.6528   -0.4927 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.9449    1.7161   -0.6394 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0562    2.9088   -1.0348 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.1333    1.9296   -0.5049 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9113   -0.4092    1.6956 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8809   -1.0025    2.7409 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6234    0.8151    1.6042 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4913   -1.2420    0.1317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1122   -2.4591   -0.5498 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7445   -1.8038   -1.7816 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2614   -0.5256   -1.2433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5835   -0.6073   -0.5130 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5902   -1.4021   -1.2637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3080   -2.7514   -1.0743 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9842   -1.2359   -0.7020 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0891   -0.2246    0.4157 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5145   -0.1056    0.8378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2792    0.9432    0.1287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4770    0.3281   -0.3541 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6988    1.6460   -1.0234 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2646    1.4673   -1.2776 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4601    1.0301   -0.0389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5789    2.1642    0.9413 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0042    0.8694   -0.3717 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0550    1.4742    0.5747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8228    0.7416    0.8963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9685   -0.1137    2.0139 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1517   -0.0100   -0.2626 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4058    1.0221   -1.0127 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1725   -3.0460   -0.6641 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2802   -1.9412   -1.7221 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7293   -1.3767   -0.9156 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7924   -2.5988    0.9088 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7366   -0.3435    2.1157 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0685   -1.4778    2.2650 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6550    0.9087    2.1336 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2271    0.9334    0.4007 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3099    0.9963    0.0576 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7646   -1.9195    0.6828 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5404   -1.9302   -0.8967 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2766   -0.8820   -1.6772 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7598    1.1139   -0.6724 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1780    0.2348   -2.1127 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1510   -0.6081    0.7211 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5218   -1.4006   -0.8313 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2088   -0.1107    0.0143 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3033    3.1406   -0.3558 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2980    3.3943   -1.8823 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0178    1.6673    1.8162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9586   -1.3911    1.2263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8063   -3.0145    0.0474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3683   -3.1398   -0.9744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9028   -1.4936   -2.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4442   -2.3990   -2.3459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3848    0.1631   -2.0911 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4317   -1.0674    0.4819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5221   -1.1743   -2.3433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7780   -3.2567   -1.8032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7229   -1.0243   -1.5554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4003   -2.2159   -0.2674 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.9563   -1.1231    0.6891 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.0342    1.1037   -0.6934 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.8216    2.9574    0.7226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5517    2.7254    0.8096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5554    1.8440    1.9951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8429    1.3125   -1.3779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5970    1.6063    1.5546 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8498    2.5467    0.2740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0708    1.5249    1.2522 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5696    0.3500    2.6334 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0805    1.7452   -0.2905 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1886    1.6606   -1.5334 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2539    0.6760   -1.8054 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
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 12 13  1  0
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  8 16  1  0
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 36 85  1  0
 36 86  1  0
 37 87  1  0
 38 88  1  0
 40 89  1  0
 40 90  1  0
 40 91  1  0
M  END


  Mrv1652308302119272D          

 40 43  0  0  0  0            999 V2000
   11.0730   -3.4133    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7874   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7874   -4.6508    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.5019   -3.4133    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.2164   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9309   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6453   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3598   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0743   -3.8258    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   16.7887   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7887   -2.5883    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.5032   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2177   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9322   -3.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9322   -4.6508    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6466   -3.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7329   -2.5929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5398   -2.4213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.9523   -3.1358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.7593   -3.3073    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.3113   -2.6942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0564   -1.9096    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1183   -2.8658    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.3732   -3.6504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.1802   -3.8219    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.4352   -4.6065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.2421   -4.7781    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.8831   -5.2196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.0762   -5.0481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.8212   -4.2635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.2692   -4.8766    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0142   -4.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.4622   -4.7050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.6552   -4.5335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.1032   -5.1466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.4003   -3.7489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7872   -4.3009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3598   -2.5883    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0743   -2.1758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.6453   -2.1758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 24 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 20 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 34 36  1  0  0  0  0
 16 36  1  0  0  0  0
 19 36  1  0  0  0  0
 36 37  1  0  0  0  0
  8 38  1  0  0  0  0
 38 39  2  0  0  0  0
 38 40  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0242383

> <DATABASE_NAME>
hmdb

> <SMILES>
CC(CCC(=O)NC(CCCNC(N)=O)C(O)=O)C1CCC2C3C(O)CC4CC(O)CCC4(C)C3CC(O)C12C

> <INCHI_IDENTIFIER>
InChI=1S/C30H51N3O7/c1-16(6-9-25(37)33-22(27(38)39)5-4-12-32-28(31)40)19-7-8-20-26-21(15-24(36)30(19,20)3)29(2)11-10-18(34)13-17(29)14-23(26)35/h16-24,26,34-36H,4-15H2,1-3H3,(H,33,37)(H,38,39)(H3,31,32,40)

> <INCHI_KEY>
RTDQSSMYUXUAHN-UHFFFAOYSA-N

> <FORMULA>
C30H51N3O7

> <MOLECULAR_WEIGHT>
565.752

> <EXACT_MASS>
565.372700994

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
91

> <JCHEM_AVERAGE_POLARIZABILITY>
63.689355654641176

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-(carbamoylamino)-2-(4-{5,9,16-trihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl}pentanamido)pentanoic acid

> <ALOGPS_LOGP>
1.29

> <JCHEM_LOGP>
0.8548071753333326

> <ALOGPS_LOGS>
-4.77

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.222665376742441

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.811594303439548

> <JCHEM_PKA_STRONGEST_BASIC>
-0.11543682269130506

> <JCHEM_POLAR_SURFACE_AREA>
182.20999999999998

> <JCHEM_REFRACTIVITY>
148.91840000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.68e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-(carbamoylamino)-2-(4-{5,9,16-trihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl}pentanamido)pentanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0242383
     RDKit          3D
Cholylcitrulline
 91 94  0  0  0  0  0  0  0  0999 V2000
    1.8136   -1.9724   -0.7122 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9175   -1.5327    0.3885 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5535   -0.8341    1.5471 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5572    0.2707    1.2394 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8765   -0.3007    0.9879 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9243   -1.6009    1.3976 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0715    0.1055    0.4615 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.1869   -0.9048    0.4349 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9971   -0.9328   -0.7651 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9653    0.1460   -1.0273 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3167   -0.4257   -0.3417 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1311    0.6528   -0.4927 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.9449    1.7161   -0.6394 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0562    2.9088   -1.0348 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.1333    1.9296   -0.5049 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9113   -0.4092    1.6956 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8809   -1.0025    2.7409 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6234    0.8151    1.6042 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4913   -1.2420    0.1317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1122   -2.4591   -0.5498 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7445   -1.8038   -1.7816 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2614   -0.5256   -1.2433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5835   -0.6073   -0.5130 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5902   -1.4021   -1.2637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3080   -2.7514   -1.0743 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9842   -1.2359   -0.7020 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0891   -0.2246    0.4157 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5145   -0.1056    0.8378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2792    0.9432    0.1287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4770    0.3281   -0.3541 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6988    1.6460   -1.0234 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2646    1.4673   -1.2776 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4601    1.0301   -0.0389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5789    2.1642    0.9413 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0042    0.8694   -0.3717 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0550    1.4742    0.5747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8228    0.7416    0.8963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9685   -0.1137    2.0139 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1517   -0.0100   -0.2626 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4058    1.0221   -1.0127 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7924   -2.5988    0.9088 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7366   -0.3435    2.1157 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0685   -1.4778    2.2650 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6550    0.9087    2.1336 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2271    0.9334    0.4007 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3099    0.9963    0.0576 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7646   -1.9195    0.6828 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5404   -1.9302   -0.8967 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2766   -0.8820   -1.6772 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7598    1.1139   -0.6724 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1780    0.2348   -2.1127 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1510   -0.6081    0.7211 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5218   -1.4006   -0.8313 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2088   -0.1107    0.0143 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3033    3.1406   -0.3558 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2980    3.3943   -1.8823 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0178    1.6673    1.8162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9586   -1.3911    1.2263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8063   -3.0145    0.0474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3683   -3.1398   -0.9744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9028   -1.4936   -2.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4442   -2.3990   -2.3459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3848    0.1631   -2.0911 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4317   -1.0674    0.4819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5221   -1.1743   -2.3433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7780   -3.2567   -1.8032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7229   -1.0243   -1.5554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4003   -2.2159   -0.2674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4990   -0.6618    1.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9563   -1.1231    0.6891 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5303    0.0538    1.9290 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.5517    2.7254    0.8096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5554    1.8440    1.9951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8429    1.3125   -1.3779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5970    1.6063    1.5546 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8498    2.5467    0.2740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0708    1.5249    1.2522 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5696    0.3500    2.6334 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0805    1.7452   -0.2905 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1886    1.6606   -1.5334 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2539    0.6760   -1.8054 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
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  9 10  1  0
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 40 90  1  0
 40 91  1  0
M  END

HEADER    PROTEIN                                 30-AUG-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   30-AUG-21         0                                  
HETATM    1  O   UNK     0      20.670  -6.372   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      22.003  -7.142   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0      22.003  -8.682   0.000  0.00  0.00           N+0
HETATM    4  N   UNK     0      23.337  -6.372   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0      24.671  -7.142   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      26.004  -6.372   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      27.338  -7.142   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      28.672  -6.372   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      30.005  -7.142   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      31.339  -6.372   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      31.339  -4.832   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      32.673  -7.142   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      34.006  -6.372   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      35.340  -7.142   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      35.340  -8.682   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      36.674  -6.372   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      36.835  -4.840   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      38.341  -4.520   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      39.111  -5.854   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      40.617  -6.174   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      41.648  -5.029   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      41.172  -3.565   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      43.154  -5.349   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      43.630  -6.814   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      45.136  -7.134   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      45.612  -8.599   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      47.119  -8.919   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      44.582  -9.743   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      43.075  -9.423   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      42.600  -7.958   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      41.569  -9.103   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      41.093  -7.638   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      40.063  -8.783   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      38.556  -8.463   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      37.526  -9.607   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      38.081  -6.998   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      36.936  -8.028   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      28.672  -4.832   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      30.005  -4.062   0.000  0.00  0.00           O+0
HETATM   40  O   UNK     0      27.338  -4.062   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   38                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   36                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   36                                                  
CONECT   20   19   21   32                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25   30                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   24   31   32                                             
CONECT   31   30                                                            
CONECT   32   30   20   33                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   16   19   37                                             
CONECT   37   36                                                            
CONECT   38    8   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   86    0
END

COMPND    HMDB0242383
HETATM    1  C1  UNL     1       1.814  -1.972  -0.712  1.00  0.00           C  
HETATM    2  C2  UNL     1       0.918  -1.533   0.389  1.00  0.00           C  
HETATM    3  C3  UNL     1       1.553  -0.834   1.547  1.00  0.00           C  
HETATM    4  C4  UNL     1       2.557   0.271   1.239  1.00  0.00           C  
HETATM    5  C5  UNL     1       3.877  -0.301   0.988  1.00  0.00           C  
HETATM    6  O1  UNL     1       3.924  -1.601   1.398  1.00  0.00           O  
HETATM    7  N1  UNL     1       5.072   0.105   0.462  1.00  0.00           N  
HETATM    8  C6  UNL     1       6.187  -0.905   0.435  1.00  0.00           C  
HETATM    9  C7  UNL     1       6.997  -0.933  -0.765  1.00  0.00           C  
HETATM   10  C8  UNL     1       7.965   0.146  -1.027  1.00  0.00           C  
HETATM   11  C9  UNL     1       9.317  -0.426  -0.342  1.00  0.00           C  
HETATM   12  N2  UNL     1      10.131   0.653  -0.493  1.00  0.00           N  
HETATM   13  C10 UNL     1      10.945   1.716  -0.639  1.00  0.00           C  
HETATM   14  N3  UNL     1      10.056   2.909  -1.035  1.00  0.00           N  
HETATM   15  O2  UNL     1      12.133   1.930  -0.505  1.00  0.00           O  
HETATM   16  C11 UNL     1       6.911  -0.409   1.696  1.00  0.00           C  
HETATM   17  O3  UNL     1       6.881  -1.002   2.741  1.00  0.00           O  
HETATM   18  O4  UNL     1       7.623   0.815   1.604  1.00  0.00           O  
HETATM   19  C12 UNL     1      -0.491  -1.242   0.132  1.00  0.00           C  
HETATM   20  C13 UNL     1      -1.112  -2.459  -0.550  1.00  0.00           C  
HETATM   21  C14 UNL     1      -1.744  -1.804  -1.782  1.00  0.00           C  
HETATM   22  C15 UNL     1      -2.261  -0.526  -1.243  1.00  0.00           C  
HETATM   23  C16 UNL     1      -3.583  -0.607  -0.513  1.00  0.00           C  
HETATM   24  C17 UNL     1      -4.590  -1.402  -1.264  1.00  0.00           C  
HETATM   25  O5  UNL     1      -4.308  -2.751  -1.074  1.00  0.00           O  
HETATM   26  C18 UNL     1      -5.984  -1.236  -0.702  1.00  0.00           C  
HETATM   27  C19 UNL     1      -6.089  -0.225   0.416  1.00  0.00           C  
HETATM   28  C20 UNL     1      -7.514  -0.106   0.838  1.00  0.00           C  
HETATM   29  C21 UNL     1      -8.279   0.943   0.129  1.00  0.00           C  
HETATM   30  O6  UNL     1      -9.477   0.328  -0.354  1.00  0.00           O  
HETATM   31  C22 UNL     1      -7.699   1.646  -1.023  1.00  0.00           C  
HETATM   32  C23 UNL     1      -6.265   1.467  -1.278  1.00  0.00           C  
HETATM   33  C24 UNL     1      -5.460   1.030  -0.039  1.00  0.00           C  
HETATM   34  C25 UNL     1      -5.579   2.164   0.941  1.00  0.00           C  
HETATM   35  C26 UNL     1      -4.004   0.869  -0.372  1.00  0.00           C  
HETATM   36  C27 UNL     1      -3.055   1.474   0.575  1.00  0.00           C  
HETATM   37  C28 UNL     1      -1.823   0.742   0.896  1.00  0.00           C  
HETATM   38  O7  UNL     1      -1.969  -0.114   2.014  1.00  0.00           O  
HETATM   39  C29 UNL     1      -1.152  -0.010  -0.263  1.00  0.00           C  
HETATM   40  C30 UNL     1      -0.406   1.022  -1.013  1.00  0.00           C  
HETATM   41  H1  UNL     1       2.173  -3.046  -0.664  1.00  0.00           H  
HETATM   42  H2  UNL     1       1.280  -1.941  -1.722  1.00  0.00           H  
HETATM   43  H3  UNL     1       2.729  -1.377  -0.916  1.00  0.00           H  
HETATM   44  H4  UNL     1       0.792  -2.599   0.909  1.00  0.00           H  
HETATM   45  H5  UNL     1       0.737  -0.344   2.116  1.00  0.00           H  
HETATM   46  H6  UNL     1       2.069  -1.478   2.265  1.00  0.00           H  
HETATM   47  H7  UNL     1       2.655   0.909   2.134  1.00  0.00           H  
HETATM   48  H8  UNL     1       2.227   0.933   0.401  1.00  0.00           H  
HETATM   49  H9  UNL     1       5.310   0.996   0.058  1.00  0.00           H  
HETATM   50  H10 UNL     1       5.765  -1.920   0.683  1.00  0.00           H  
HETATM   51  H11 UNL     1       7.540  -1.930  -0.897  1.00  0.00           H  
HETATM   52  H12 UNL     1       6.277  -0.882  -1.677  1.00  0.00           H  
HETATM   53  H13 UNL     1       7.760   1.114  -0.672  1.00  0.00           H  
HETATM   54  H14 UNL     1       8.178   0.235  -2.113  1.00  0.00           H  
HETATM   55  H15 UNL     1       9.151  -0.608   0.721  1.00  0.00           H  
HETATM   56  H16 UNL     1       9.522  -1.401  -0.831  1.00  0.00           H  
HETATM   57  H17 UNL     1      11.209  -0.111   0.014  1.00  0.00           H  
HETATM   58  H18 UNL     1       9.303   3.141  -0.356  1.00  0.00           H  
HETATM   59  H19 UNL     1      10.298   3.394  -1.882  1.00  0.00           H  
HETATM   60  H20 UNL     1       7.018   1.667   1.816  1.00  0.00           H  
HETATM   61  H21 UNL     1      -0.959  -1.391   1.226  1.00  0.00           H  
HETATM   62  H22 UNL     1      -1.806  -3.015   0.047  1.00  0.00           H  
HETATM   63  H23 UNL     1      -0.368  -3.140  -0.974  1.00  0.00           H  
HETATM   64  H24 UNL     1      -0.903  -1.494  -2.501  1.00  0.00           H  
HETATM   65  H25 UNL     1      -2.444  -2.399  -2.346  1.00  0.00           H  
HETATM   66  H26 UNL     1      -2.385   0.163  -2.091  1.00  0.00           H  
HETATM   67  H27 UNL     1      -3.432  -1.067   0.482  1.00  0.00           H  
HETATM   68  H28 UNL     1      -4.522  -1.174  -2.343  1.00  0.00           H  
HETATM   69  H29 UNL     1      -4.778  -3.257  -1.803  1.00  0.00           H  
HETATM   70  H30 UNL     1      -6.723  -1.024  -1.555  1.00  0.00           H  
HETATM   71  H31 UNL     1      -6.400  -2.216  -0.267  1.00  0.00           H  
HETATM   72  H32 UNL     1      -5.499  -0.662   1.271  1.00  0.00           H  
HETATM   73  H33 UNL     1      -7.956  -1.123   0.689  1.00  0.00           H  
HETATM   74  H34 UNL     1      -7.530   0.054   1.929  1.00  0.00           H  
HETATM   75  H35 UNL     1      -8.702   1.662   0.908  1.00  0.00           H  
HETATM   76  H36 UNL     1     -10.034   1.104  -0.693  1.00  0.00           H  
HETATM   77  H37 UNL     1      -8.207   1.455  -1.979  1.00  0.00           H  
HETATM   78  H38 UNL     1      -7.839   2.782  -0.840  1.00  0.00           H  
HETATM   79  H39 UNL     1      -5.754   2.423  -1.570  1.00  0.00           H  
HETATM   80  H40 UNL     1      -6.052   0.782  -2.143  1.00  0.00           H  
HETATM   81  H41 UNL     1      -4.822   2.957   0.723  1.00  0.00           H  
HETATM   82  H42 UNL     1      -6.552   2.725   0.810  1.00  0.00           H  
HETATM   83  H43 UNL     1      -5.555   1.844   1.995  1.00  0.00           H  
HETATM   84  H44 UNL     1      -3.843   1.312  -1.378  1.00  0.00           H  
HETATM   85  H45 UNL     1      -3.597   1.606   1.555  1.00  0.00           H  
HETATM   86  H46 UNL     1      -2.850   2.547   0.274  1.00  0.00           H  
HETATM   87  H47 UNL     1      -1.071   1.525   1.252  1.00  0.00           H  
HETATM   88  H48 UNL     1      -2.570   0.350   2.633  1.00  0.00           H  
HETATM   89  H49 UNL     1       0.081   1.745  -0.291  1.00  0.00           H  
HETATM   90  H50 UNL     1      -1.189   1.661  -1.533  1.00  0.00           H  
HETATM   91  H51 UNL     1       0.254   0.676  -1.805  1.00  0.00           H  
CONECT    1    2   41   42   43
CONECT    2    3   19   44
CONECT    3    4   45   46
CONECT    4    5   47   48
CONECT    5    6    6    7
CONECT    7    8   49
CONECT    8    9   16   50
CONECT    9   10   51   52
CONECT   10   11   53   54
CONECT   11   12   55   56
CONECT   12   13   57
CONECT   13   14   15   15
CONECT   14   58   59
CONECT   16   17   17   18
CONECT   18   60
CONECT   19   20   39   61
CONECT   20   21   62   63
CONECT   21   22   64   65
CONECT   22   23   39   66
CONECT   23   24   35   67
CONECT   24   25   26   68
CONECT   25   69
CONECT   26   27   70   71
CONECT   27   28   33   72
CONECT   28   29   73   74
CONECT   29   30   31   75
CONECT   30   76
CONECT   31   32   77   78
CONECT   32   33   79   80
CONECT   33   34   35
CONECT   34   81   82   83
CONECT   35   36   84
CONECT   36   37   85   86
CONECT   37   38   39   87
CONECT   38   88
CONECT   39   40
CONECT   40   89   90   91
END

HMDB0242383
     RDKit          3D
Cholylcitrulline
 91 94  0  0  0  0  0  0  0  0999 V2000
    1.8136   -1.9724   -0.7122 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9175   -1.5327    0.3885 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5535   -0.8341    1.5471 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5572    0.2707    1.2394 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8765   -0.3007    0.9879 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9243   -1.6009    1.3976 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0715    0.1055    0.4615 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.1869   -0.9048    0.4349 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9971   -0.9328   -0.7651 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9653    0.1460   -1.0273 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3167   -0.4257   -0.3417 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1311    0.6528   -0.4927 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.9449    1.7161   -0.6394 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0562    2.9088   -1.0348 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.1333    1.9296   -0.5049 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9113   -0.4092    1.6956 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8809   -1.0025    2.7409 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6234    0.8151    1.6042 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4913   -1.2420    0.1317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1122   -2.4591   -0.5498 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7445   -1.8038   -1.7816 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2614   -0.5256   -1.2433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5835   -0.6073   -0.5130 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5902   -1.4021   -1.2637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3080   -2.7514   -1.0743 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9842   -1.2359   -0.7020 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0891   -0.2246    0.4157 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5145   -0.1056    0.8378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2792    0.9432    0.1287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4770    0.3281   -0.3541 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6988    1.6460   -1.0234 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2646    1.4673   -1.2776 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4601    1.0301   -0.0389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5789    2.1642    0.9413 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0042    0.8694   -0.3717 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0550    1.4742    0.5747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8228    0.7416    0.8963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9685   -0.1137    2.0139 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1517   -0.0100   -0.2626 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4058    1.0221   -1.0127 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1725   -3.0460   -0.6641 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2802   -1.9412   -1.7221 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7293   -1.3767   -0.9156 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7924   -2.5988    0.9088 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7366   -0.3435    2.1157 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.4317   -1.0674    0.4819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5221   -1.1743   -2.3433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7780   -3.2567   -1.8032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7229   -1.0243   -1.5554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4003   -2.2159   -0.2674 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
2-[(1-Hydroxy-4-{5,9,16-trihydroxy-2,15-dimethyltetracyclo[8.7.0.0,.0,]heptadecan-14-yl}pentylidene)amino]-5-[(C-hydroxycarbonimidoyl)amino]pentanoate	Generator

Chemical Formula

C₃₀H₅₁N₃O₇

Average Molecular Weight

565.752

Monoisotopic Molecular Weight

565.372700994

IUPAC Name

5-(carbamoylamino)-2-(4-{5,9,16-trihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl}pentanamido)pentanoic acid

Traditional Name

5-(carbamoylamino)-2-(4-{5,9,16-trihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl}pentanamido)pentanoic acid

CAS Registry Number

Not Available

SMILES

CC(CCC(=O)NC(CCCNC(N)=O)C(O)=O)C1CCC2C3C(O)CC4CC(O)CCC4(C)C3CC(O)C12C

InChI Identifier

InChI=1S/C30H51N3O7/c1-16(6-9-25(37)33-22(27(38)39)5-4-12-32-28(31)40)19-7-8-20-26-21(15-24(36)30(19,20)3)29(2)11-10-18(34)13-17(29)14-23(26)35/h16-24,26,34-36H,4-15H2,1-3H3,(H,33,37)(H,38,39)(H3,31,32,40)

InChI Key

RTDQSSMYUXUAHN-UHFFFAOYSA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	1.29	ALOGPS
logP	0.85	ChemAxon
logS	-4.8	ALOGPS
pKa (Strongest Acidic)	3.81	ChemAxon
pKa (Strongest Basic)	-0.12	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	182.21 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	148.92 m³·mol⁻¹	ChemAxon
Polarizability	63.69 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M-2H]-	254.207	30932474
DeepCCS	[M+Na]+	229.632	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Cholylcitrulline	CC(CCC(=O)NC(CCCNC(N)=O)C(O)=O)C1CCC2C3C(O)CC4CC(O)CCC4(C)C3CC(O)C12C	3712.6	Standard polar	33892256
Cholylcitrulline	CC(CCC(=O)NC(CCCNC(N)=O)C(O)=O)C1CCC2C3C(O)CC4CC(O)CCC4(C)C3CC(O)C12C	2925.0	Standard non polar	33892256
Cholylcitrulline	CC(CCC(=O)NC(CCCNC(N)=O)C(O)=O)C1CCC2C3C(O)CC4CC(O)CCC4(C)C3CC(O)C12C	5176.9	Semi standard non polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cholylcitrulline 10V, Positive-QTOF	splash10-014j-0000090000-6e1a35420df663fde70c	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cholylcitrulline 20V, Positive-QTOF	splash10-01q9-1412190000-c84ed12208fc70390d5c	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cholylcitrulline 40V, Positive-QTOF	splash10-01ox-9402000000-a8f005f85499a97d4bdf	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cholylcitrulline 10V, Negative-QTOF	splash10-03di-0000090000-b98473ceff93b6589f74	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cholylcitrulline 20V, Negative-QTOF	splash10-03di-3000090000-7dc45d0ff8cd55a77faf	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cholylcitrulline 40V, Negative-QTOF	splash10-0006-9000100000-2afb51100115899bb781	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular

Biospecimen Locations

Not Available

Tissue Locations

Intestine

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Guzior DV, Quinn RA: Review: microbial transformations of human bile acids. Microbiome. 2021 Jun 14;9(1):140. doi: 10.1186/s40168-021-01101-1. [PubMed:34127070 ]
Quinn RA, Melnik AV, Vrbanac A, Fu T, Patras KA, Christy MP, Bodai Z, Belda-Ferre P, Tripathi A, Chung LK, Downes M, Welch RD, Quinn M, Humphrey G, Panitchpakdi M, Weldon KC, Aksenov A, da Silva R, Avila-Pacheco J, Clish C, Bae S, Mallick H, Franzosa EA, Lloyd-Price J, Bussell R, Thron T, Nelson AT, Wang M, Leszczynski E, Vargas F, Gauglitz JM, Meehan MJ, Gentry E, Arthur TD, Komor AC, Poulsen O, Boland BS, Chang JT, Sandborn WJ, Lim M, Garg N, Lumeng JC, Xavier RJ, Kazmierczak BI, Jain R, Egan M, Rhee KE, Ferguson D, Raffatellu M, Vlamakis H, Haddad GG, Siegel D, Huttenhower C, Mazmanian SK, Evans RM, Nizet V, Knight R, Dorrestein PC: Global chemical effects of the microbiome include new bile-acid conjugations. Nature. 2020 Mar;579(7797):123-129. doi: 10.1038/s41586-020-2047-9. Epub 2020 Feb 26. [PubMed:32103176 ]

Showing metabocard for Cholylcitrulline (HMDB0242383)

MOL for HMDB0242383 (Cholylcitrulline)

3D MOL for HMDB0242383 (Cholylcitrulline)

3D SDF for HMDB0242383 (Cholylcitrulline)

3D-SDF for HMDB0242383 (Cholylcitrulline)

PDB for HMDB0242383 (Cholylcitrulline)

3D PDB for HMDB0242383 (Cholylcitrulline)

SMILES for HMDB0242383 (Cholylcitrulline)

INCHI for HMDB0242383 (Cholylcitrulline)

Structure for HMDB0242383 (Cholylcitrulline)

3D Structure for HMDB0242383 (Cholylcitrulline)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

MS/MS Spectra