Hmdb loader
Survey
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 21:26:30 UTC
Update Date2021-09-26 22:51:55 UTC
HMDB IDHMDB0244272
Secondary Accession NumbersNone
Metabolite Identification
Common Name10-Hydroxydecanoic acid
Description10-Hydroxydecanoic acid, also known as 10-OH-capric acid or 10-OH-caprate, belongs to the class of organic compounds known as medium-chain hydroxy acids and derivatives. These are hydroxy acids with a 6 to 12 carbon atoms long side chain. Based on a literature review a significant number of articles have been published on 10-Hydroxydecanoic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). 10-hydroxydecanoic acid is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 10-Hydroxydecanoic acid is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
10-HydroxydecanoateChEBI
10-OH-Capric acidChEBI
10-OH-Decanoic acidChEBI
10-OH-CaprateGenerator
10-OH-DecanoateGenerator
10-HydroxycaprateHMDB
10-HDAA CPDHMDB
10HDA CPDHMDB
10-Hydroxy caprateHMDB
10-Hydroxydecanoic acidChEBI
Chemical FormulaC10H20O3
Average Molecular Weight188.267
Monoisotopic Molecular Weight188.141244504
IUPAC Name10-hydroxydecanoic acid
Traditional Name10-hydroxydecanoic acid
CAS Registry NumberNot Available
SMILES
OCCCCCCCCCC(O)=O
InChI Identifier
InChI=1S/C10H20O3/c11-9-7-5-3-1-2-4-6-8-10(12)13/h11H,1-9H2,(H,12,13)
InChI KeyYJCJVMMDTBEITC-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain hydroxy acids and derivatives. These are hydroxy acids with a 6 to 12 carbon atoms long side chain.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassHydroxy acids and derivatives
Sub ClassMedium-chain hydroxy acids and derivatives
Direct ParentMedium-chain hydroxy acids and derivatives
Alternative Parents
Substituents
  • Medium-chain hydroxy acid
  • Medium-chain fatty acid
  • Hydroxy fatty acid
  • Straight chain fatty acid
  • Fatty acyl
  • Fatty acid
  • Carboxylic acid derivative
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Carbonyl group
  • Organic oxide
  • Organic oxygen compound
  • Alcohol
  • Organooxygen compound
  • Primary alcohol
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.38ALOGPS
logP2.15ChemAxon
logS-2.2ALOGPS
pKa (Strongest Acidic)4.95ChemAxon
pKa (Strongest Basic)-2ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area57.53 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity51.41 m³·mol⁻¹ChemAxon
Polarizability22.64 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+145.40130932474
DeepCCS[M-H]-141.89230932474
DeepCCS[M-2H]-178.84530932474
DeepCCS[M+Na]+154.21230932474
AllCCS[M+H]+143.732859911
AllCCS[M+H-H2O]+140.032859911
AllCCS[M+NH4]+147.132859911
AllCCS[M+Na]+148.132859911
AllCCS[M-H]-146.632859911
AllCCS[M+Na-2H]-148.032859911
AllCCS[M+HCOO]-149.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
10-Hydroxydecanoic acidOCCCCCCCCCC(O)=O2743.6Standard polar33892256
10-Hydroxydecanoic acidOCCCCCCCCCC(O)=O1601.2Standard non polar33892256
10-Hydroxydecanoic acidOCCCCCCCCCC(O)=O1674.8Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 10-Hydroxydecanoic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-9500000000-be36e31f6203e58afea82021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 10-Hydroxydecanoic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 10-Hydroxydecanoic acid GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 10-Hydroxydecanoic acid GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 10-Hydroxydecanoic acid GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 10-Hydroxydecanoic acid GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 10-Hydroxydecanoic acid GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 10-Hydroxydecanoic acid GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - 10-Hydroxydecanoic acid 20V, Negative-QTOFsplash10-000i-0900000000-2c030d13d54d3d34d2742021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 10-Hydroxydecanoic acid 35V, Negative-QTOFsplash10-000i-0900000000-7bbc62cf244835eb42462021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 10-Hydroxydecanoic acid 10V, Negative-QTOFsplash10-000i-0900000000-59fadb0af29e9adc9d882021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 10-Hydroxydecanoic acid 35V, Negative-QTOFsplash10-000i-0900000000-a1a7794d653cf4da3ca02021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 10-Hydroxydecanoic acid 20V, Positive-QTOFsplash10-066u-9100000000-bef1e804288d3f87164d2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 10-Hydroxydecanoic acid 10V, Positive-QTOFsplash10-0gbi-9500000000-81f3d04f1d8872a8aad52021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 10-Hydroxydecanoic acid 40V, Positive-QTOFsplash10-0a4l-9000000000-e743628c5001cd45ab482021-09-20HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 10V, Positive-QTOFsplash10-00dr-0900000000-c2cacc3402770d971ebf2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 20V, Positive-QTOFsplash10-0fml-2900000000-c527670433679c9daf492016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 40V, Positive-QTOFsplash10-07eg-9200000000-359834ecb03901328f7a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 10V, Negative-QTOFsplash10-000i-0900000000-68b3429139b2568613182016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 20V, Negative-QTOFsplash10-05n0-1900000000-00cefb9c0233d0e4c17e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 40V, Negative-QTOFsplash10-0a4l-9400000000-cfc36edb15fc8c87f0772016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 10V, Positive-QTOFsplash10-059i-9500000000-ceaafc731ff9cad388e62021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 20V, Positive-QTOFsplash10-0aou-9000000000-9eb6f01fe8572fb14c8c2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 40V, Positive-QTOFsplash10-0a4l-9000000000-37cb741ff51b1cda13d32021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 10V, Negative-QTOFsplash10-000i-0900000000-e2d3b6bfc8f9d21696182021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 20V, Negative-QTOFsplash10-00kr-0900000000-6a7a009125fffcde6be72021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10-Hydroxydecanoic acid 40V, Negative-QTOFsplash10-0a4l-9200000000-98037a16fc3de382e1922021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID66903
KEGG Compound IDC02774
BioCyc ID10-HYDROXYDECANOATE
BiGG IDNot Available
Wikipedia Link10-Hydroxydecanoic acid
METLIN IDNot Available
PubChem Compound74300
PDB IDNot Available
ChEBI ID17409
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1157061
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]