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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-10 21:28:36 UTC

Update Date

2021-09-26 22:51:58 UTC

HMDB ID

HMDB0244310

Secondary Accession Numbers

None

Metabolite Identification

Common Name

2',3'-Dideoxycytidine-5'-monophosphate

Description

2',3'-Dideoxycytidine-5'-monophosphate belongs to the class of organic compounds known as pyrimidones. Pyrimidones are compounds that contain a pyrimidine ring, which bears a ketone. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions. Based on a literature review very few articles have been published on 2',3'-Dideoxycytidine-5'-monophosphate. This compound has been identified in human blood as reported by (PMID: 31557052 ). 2',3'-dideoxycytidine-5'-monophosphate is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 2',3'-Dideoxycytidine-5'-monophosphate is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0244310
     RDKit          3D
2',3'-Dideoxycytidine-5'-monophosphate
 33 34  0  0  0  0  0  0  0  0999 V2000
   -5.9835    0.5762    0.2520 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5729    0.4555    0.0345 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8061   -0.4997    0.6738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4393   -0.5930    0.4428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8196    0.2438   -0.4103 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3788    0.1473   -0.6554 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1028   -1.2748   -0.6492 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8579   -1.3852    0.6317 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9314    0.0112    1.1539 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3997    0.4052    1.3201 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0140    0.2898    0.0664 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6318    0.7009    0.1403 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.9486    1.2415    1.5305 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6287   -0.6725   -0.0711 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0618    1.8326   -1.0397 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3614    0.8625    0.2485 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5908    1.1639   -1.0186 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9927    1.9495   -1.8233 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9164    1.2731   -0.8106 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3938    1.3337    0.8325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6629   -0.1041   -0.1719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3271   -1.1652    1.3586 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8703   -1.3589    0.9658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1395    0.5547   -1.6815 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7004   -1.5331   -1.5450 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7866   -1.9372   -0.6625 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3889   -2.1044    1.3617 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8615   -1.8209    0.3915 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4366    0.0572    2.1600 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3992    1.4505    1.6920 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8996   -0.2997    2.0268 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0957   -1.4356   -0.4487 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9604    1.6351   -1.4260 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 12 15  1  0
  9 16  1  0
  5 17  1  0
 17 18  2  0
 17 19  1  0
 19  2  2  0
 16  6  1  0
  1 20  1  0
  1 21  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  0
  7 25  1  0
  7 26  1  0
  8 27  1  0
  8 28  1  0
  9 29  1  0
 10 30  1  0
 10 31  1  0
 14 32  1  0
 15 33  1  0
M  END

  Mrv1652309102123282D          

 19 20  0  0  0  0            999 V2000
    1.3819   -1.7224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -2.5070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -2.5070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0470   -1.7224    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6039    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1830   -3.1745    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1526   -3.9282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3323   -4.5956    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1528   -4.5094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4884   -3.7557    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0034   -3.0882    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3390   -2.3346    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6377   -5.1768    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  8 11  1  0  0  0  0
  3 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
 17 18  2  0  0  0  0
 15 19  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0244310

> <DATABASE_NAME>
hmdb

> <SMILES>
NC1=NC(=O)N(C=C1)C1CCC(COP(O)(O)=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C9H14N3O6P/c10-7-3-4-12(9(13)11-7)8-2-1-6(18-8)5-17-19(14,15)16/h3-4,6,8H,1-2,5H2,(H2,10,11,13)(H2,14,15,16)

> <INCHI_KEY>
RAJMXAZJKUGYGW-UHFFFAOYSA-N

> <FORMULA>
C9H14N3O6P

> <MOLECULAR_WEIGHT>
291.2

> <EXACT_MASS>
291.062022181

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
33

> <JCHEM_AVERAGE_POLARIZABILITY>
25.565851874804824

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}phosphonic acid

> <ALOGPS_LOGP>
-1.72

> <JCHEM_LOGP>
-1.5659908071653184

> <ALOGPS_LOGS>
-1.42

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.33749919284873

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.3631006393429312

> <JCHEM_PKA_STRONGEST_BASIC>
0.2756491976813039

> <JCHEM_POLAR_SURFACE_AREA>
134.68

> <JCHEM_REFRACTIVITY>
63.113099999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.12e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0244310
     RDKit          3D
2',3'-Dideoxycytidine-5'-monophosphate
 33 34  0  0  0  0  0  0  0  0999 V2000
   -5.9835    0.5762    0.2520 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5729    0.4555    0.0345 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8061   -0.4997    0.6738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4393   -0.5930    0.4428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8196    0.2438   -0.4103 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3788    0.1473   -0.6554 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1028   -1.2748   -0.6492 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8579   -1.3852    0.6317 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9314    0.0112    1.1539 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3997    0.4052    1.3201 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0140    0.2898    0.0664 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6318    0.7009    0.1403 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.9486    1.2415    1.5305 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6287   -0.6725   -0.0711 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0618    1.8326   -1.0397 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3614    0.8625    0.2485 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5908    1.1639   -1.0186 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9927    1.9495   -1.8233 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9164    1.2731   -0.8106 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3938    1.3337    0.8325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6629   -0.1041   -0.1719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3271   -1.1652    1.3586 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8703   -1.3589    0.9658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1395    0.5547   -1.6815 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7004   -1.5331   -1.5450 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7866   -1.9372   -0.6625 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3889   -2.1044    1.3617 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8615   -1.8209    0.3915 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4366    0.0572    2.1600 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3992    1.4505    1.6920 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8996   -0.2997    2.0268 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0957   -1.4356   -0.4487 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9604    1.6351   -1.4260 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 12 15  1  0
  9 16  1  0
  5 17  1  0
 17 18  2  0
 17 19  1  0
 19  2  2  0
 16  6  1  0
  1 20  1  0
  1 21  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  0
  7 25  1  0
  7 26  1  0
  8 27  1  0
  8 28  1  0
  9 29  1  0
 10 30  1  0
 10 31  1  0
 14 32  1  0
 15 33  1  0
M  END

HEADER    PROTEIN                                 10-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-21         0                                  
HETATM    1  C   UNK     0       2.580  -3.215   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.104  -4.680   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.564  -4.680   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       0.088  -3.215   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       2.667  -0.000   0.000  0.00  0.00           O+0
HETATM    8  P   UNK     0       2.667   1.540   0.000  0.00  0.00           P+0
HETATM    9  O   UNK     0       2.667   3.080   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       1.127   1.540   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       4.207   1.540   0.000  0.00  0.00           O+0
HETATM   12  N   UNK     0      -0.342  -5.926   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       0.285  -7.333   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.620  -8.578   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.152  -8.417   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0      -2.778  -7.011   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0      -1.873  -5.765   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -2.499  -4.358   0.000  0.00  0.00           O+0
HETATM   19  N   UNK     0      -3.057  -9.663   0.000  0.00  0.00           N+0
CONECT    1    2    5                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   12                                                  
CONECT    4    3    5                                                       
CONECT    5    4    1    6                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    8                                                            
CONECT   12    3   13   17                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   19                                                  
CONECT   16   15   17                                                       
CONECT   17   16   12   18                                                  
CONECT   18   17                                                            
CONECT   19   15                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   40    0
END

COMPND    HMDB0244310
HETATM    1  N1  UNL     1      -5.983   0.576   0.252  1.00  0.00           N  
HETATM    2  C1  UNL     1      -4.573   0.456   0.035  1.00  0.00           C  
HETATM    3  C2  UNL     1      -3.806  -0.500   0.674  1.00  0.00           C  
HETATM    4  C3  UNL     1      -2.439  -0.593   0.443  1.00  0.00           C  
HETATM    5  N2  UNL     1      -1.820   0.244  -0.410  1.00  0.00           N  
HETATM    6  C4  UNL     1      -0.379   0.147  -0.655  1.00  0.00           C  
HETATM    7  C5  UNL     1       0.103  -1.275  -0.649  1.00  0.00           C  
HETATM    8  C6  UNL     1       0.858  -1.385   0.632  1.00  0.00           C  
HETATM    9  C7  UNL     1       0.931   0.011   1.154  1.00  0.00           C  
HETATM   10  C8  UNL     1       2.400   0.405   1.320  1.00  0.00           C  
HETATM   11  O1  UNL     1       3.014   0.290   0.066  1.00  0.00           O  
HETATM   12  P1  UNL     1       4.632   0.701   0.140  1.00  0.00           P  
HETATM   13  O2  UNL     1       4.949   1.242   1.530  1.00  0.00           O  
HETATM   14  O3  UNL     1       5.629  -0.673  -0.071  1.00  0.00           O  
HETATM   15  O4  UNL     1       5.062   1.833  -1.040  1.00  0.00           O  
HETATM   16  O5  UNL     1       0.361   0.862   0.249  1.00  0.00           O  
HETATM   17  C9  UNL     1      -2.591   1.164  -1.019  1.00  0.00           C  
HETATM   18  O6  UNL     1      -1.993   1.949  -1.823  1.00  0.00           O  
HETATM   19  N3  UNL     1      -3.916   1.273  -0.811  1.00  0.00           N  
HETATM   20  H1  UNL     1      -6.394   1.334   0.832  1.00  0.00           H  
HETATM   21  H2  UNL     1      -6.663  -0.104  -0.172  1.00  0.00           H  
HETATM   22  H3  UNL     1      -4.327  -1.165   1.359  1.00  0.00           H  
HETATM   23  H4  UNL     1      -1.870  -1.359   0.966  1.00  0.00           H  
HETATM   24  H5  UNL     1      -0.140   0.555  -1.681  1.00  0.00           H  
HETATM   25  H6  UNL     1       0.700  -1.533  -1.545  1.00  0.00           H  
HETATM   26  H7  UNL     1      -0.787  -1.937  -0.663  1.00  0.00           H  
HETATM   27  H8  UNL     1       0.389  -2.104   1.362  1.00  0.00           H  
HETATM   28  H9  UNL     1       1.862  -1.821   0.392  1.00  0.00           H  
HETATM   29  H10 UNL     1       0.437   0.057   2.160  1.00  0.00           H  
HETATM   30  H11 UNL     1       2.399   1.450   1.692  1.00  0.00           H  
HETATM   31  H12 UNL     1       2.900  -0.300   2.027  1.00  0.00           H  
HETATM   32  H13 UNL     1       5.096  -1.436  -0.449  1.00  0.00           H  
HETATM   33  H14 UNL     1       5.960   1.635  -1.426  1.00  0.00           H  
CONECT    1    2   20   21
CONECT    2    3   19   19
CONECT    3    4    4   22
CONECT    4    5   23
CONECT    5    6   17
CONECT    6    7   16   24
CONECT    7    8   25   26
CONECT    8    9   27   28
CONECT    9   10   16   29
CONECT   10   11   30   31
CONECT   11   12
CONECT   12   13   13   14   15
CONECT   14   32
CONECT   15   33
CONECT   17   18   18   19
END

HMDB0244310
     RDKit          3D
2',3'-Dideoxycytidine-5'-monophosphate
 33 34  0  0  0  0  0  0  0  0999 V2000
   -5.9835    0.5762    0.2520 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5729    0.4555    0.0345 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8061   -0.4997    0.6738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4393   -0.5930    0.4428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8196    0.2438   -0.4103 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3788    0.1473   -0.6554 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1028   -1.2748   -0.6492 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8579   -1.3852    0.6317 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9314    0.0112    1.1539 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3997    0.4052    1.3201 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0140    0.2898    0.0664 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6318    0.7009    0.1403 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.9486    1.2415    1.5305 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6287   -0.6725   -0.0711 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0618    1.8326   -1.0397 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3614    0.8625    0.2485 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5908    1.1639   -1.0186 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9927    1.9495   -1.8233 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9164    1.2731   -0.8106 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3938    1.3337    0.8325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6629   -0.1041   -0.1719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3271   -1.1652    1.3586 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8703   -1.3589    0.9658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1395    0.5547   -1.6815 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7004   -1.5331   -1.5450 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7866   -1.9372   -0.6625 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3889   -2.1044    1.3617 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8615   -1.8209    0.3915 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4366    0.0572    2.1600 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3992    1.4505    1.6920 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8996   -0.2997    2.0268 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0957   -1.4356   -0.4487 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9604    1.6351   -1.4260 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 12 15  1  0
  9 16  1  0
  5 17  1  0
 17 18  2  0
 17 19  1  0
 19  2  2  0
 16  6  1  0
  1 20  1  0
  1 21  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  0
  7 25  1  0
  7 26  1  0
  8 27  1  0
  8 28  1  0
  9 29  1  0
 10 30  1  0
 10 31  1  0
 14 32  1  0
 15 33  1  0
M  END

View in JSmol View NMR Assignments View Stereo Labels

Synonyms

Value	Source
2',3'-Dideoxycytidine-5'-monophosphoric acid	Generator
{[5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}phosphonate	HMDB

Chemical Formula

C₉H₁₄N₃O₆P

Average Molecular Weight

291.2

Monoisotopic Molecular Weight

291.062022181

IUPAC Name

{[5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}phosphonic acid

Traditional Name

[5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxyphosphonic acid

CAS Registry Number

Not Available

SMILES

NC1=NC(=O)N(C=C1)C1CCC(COP(O)(O)=O)O1

InChI Identifier

InChI=1S/C9H14N3O6P/c10-7-3-4-12(9(13)11-7)8-2-1-6(18-8)5-17-19(14,15)16/h3-4,6,8H,1-2,5H2,(H2,10,11,13)(H2,14,15,16)

InChI Key

RAJMXAZJKUGYGW-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrimidones. Pyrimidones are compounds that contain a pyrimidine ring, which bears a ketone. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Diazines

Sub Class

Pyrimidines and pyrimidine derivatives

Direct Parent

Pyrimidones

Alternative Parents

Substituents

Aminopyrimidine
Pyrimidone
Monoalkyl phosphate
Hydropyrimidine
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Imidolactam
Tetrahydrofuran
Heteroaromatic compound
Oxacycle
Azacycle
Organic nitrogen compound
Amine
Hydrocarbon derivative
Primary amine
Organic oxide
Organooxygen compound
Organonitrogen compound
Organopnictogen compound
Organic oxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	-1.7	ALOGPS
logP	-1.6	ChemAxon
logS	-1.4	ALOGPS
pKa (Strongest Acidic)	1.36	ChemAxon
pKa (Strongest Basic)	0.28	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	134.68 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	63.11 m³·mol⁻¹	ChemAxon
Polarizability	25.57 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	160.493	30932474
DeepCCS	[M-H]-	158.135	30932474
DeepCCS	[M-2H]-	191.369	30932474
DeepCCS	[M+Na]+	166.879	30932474
AllCCS	[M+H]+	163.4	32859911
AllCCS	[M+H-H2O]+	160.0	32859911
AllCCS	[M+NH4]+	166.5	32859911
AllCCS	[M+Na]+	167.4	32859911
AllCCS	[M-H]-	160.5	32859911
AllCCS	[M+Na-2H]-	160.5	32859911
AllCCS	[M+HCOO]-	160.6	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
2',3'-Dideoxycytidine-5'-monophosphate	NC1=NC(=O)N(C=C1)C1CCC(COP(O)(O)=O)O1	3688.8	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate	NC1=NC(=O)N(C=C1)C1CCC(COP(O)(O)=O)O1	2324.8	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate	NC1=NC(=O)N(C=C1)C1CCC(COP(O)(O)=O)O1	2915.5	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
2',3'-Dideoxycytidine-5'-monophosphate,1TMS,isomer #1	C[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N)=NC2=O)O1	2702.3	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,1TMS,isomer #1	C[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N)=NC2=O)O1	2572.7	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,1TMS,isomer #1	C[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N)=NC2=O)O1	4205.7	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,1TMS,isomer #2	C[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1	2785.9	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,1TMS,isomer #2	C[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1	2663.3	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,1TMS,isomer #2	C[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1	4441.4	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TMS,isomer #1	C[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N)=NC2=O)O1)O[Si](C)(C)C	2673.0	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TMS,isomer #1	C[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N)=NC2=O)O1)O[Si](C)(C)C	2625.2	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TMS,isomer #1	C[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N)=NC2=O)O1)O[Si](C)(C)C	3745.1	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TMS,isomer #2	C[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O[Si](C)(C)C)O2)C=C1	2769.3	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TMS,isomer #2	C[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O[Si](C)(C)C)O2)C=C1	2701.0	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TMS,isomer #2	C[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O[Si](C)(C)C)O2)C=C1	3749.8	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TMS,isomer #3	C[Si](C)(C)N(C1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1)[Si](C)(C)C	2751.4	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TMS,isomer #3	C[Si](C)(C)N(C1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1)[Si](C)(C)C	2797.3	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TMS,isomer #3	C[Si](C)(C)N(C1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1)[Si](C)(C)C	4038.0	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TMS,isomer #1	C[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O2)C=C1	2739.6	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TMS,isomer #1	C[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O2)C=C1	2765.4	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TMS,isomer #1	C[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O2)C=C1	3299.6	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TMS,isomer #2	C[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)O1	2719.1	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TMS,isomer #2	C[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)O1	2804.2	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TMS,isomer #2	C[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)O1	3427.0	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,4TMS,isomer #1	C[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)O1)O[Si](C)(C)C	2716.2	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,4TMS,isomer #1	C[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)O1)O[Si](C)(C)C	2851.7	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,4TMS,isomer #1	C[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)O1)O[Si](C)(C)C	3043.3	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,1TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N)=NC2=O)O1	2947.6	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,1TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N)=NC2=O)O1	2794.6	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,1TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N)=NC2=O)O1	4246.5	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,1TBDMS,isomer #2	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1	3022.0	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,1TBDMS,isomer #2	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1	2878.6	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,1TBDMS,isomer #2	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1	4402.3	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N)=NC2=O)O1)O[Si](C)(C)C(C)(C)C	3130.2	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N)=NC2=O)O1)O[Si](C)(C)C(C)(C)C	3050.5	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N)=NC2=O)O1)O[Si](C)(C)C(C)(C)C	3824.4	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TBDMS,isomer #2	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O2)C=C1	3210.6	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TBDMS,isomer #2	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O2)C=C1	3124.3	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TBDMS,isomer #2	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O2)C=C1	3840.7	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TBDMS,isomer #3	CC(C)(C)[Si](C)(C)N(C1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1)[Si](C)(C)C(C)(C)C	3193.0	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TBDMS,isomer #3	CC(C)(C)[Si](C)(C)N(C1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1)[Si](C)(C)C(C)(C)C	3209.5	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,2TBDMS,isomer #3	CC(C)(C)[Si](C)(C)N(C1=NC(=O)N(C2CCC(COP(=O)(O)O)O2)C=C1)[Si](C)(C)C(C)(C)C	4012.4	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O2)C=C1	3389.9	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O2)C=C1	3341.7	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2CCC(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O2)C=C1	3540.2	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TBDMS,isomer #2	CC(C)(C)[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)O1	3380.4	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TBDMS,isomer #2	CC(C)(C)[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)O1	3388.9	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,3TBDMS,isomer #2	CC(C)(C)[Si](C)(C)OP(=O)(O)OCC1CCC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)O1	3571.6	Standard polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,4TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)O1)O[Si](C)(C)C(C)(C)C	3543.9	Semi standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,4TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)O1)O[Si](C)(C)C(C)(C)C	3557.3	Standard non polar	33892256
2',3'-Dideoxycytidine-5'-monophosphate,4TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OP(=O)(OCC1CCC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)O1)O[Si](C)(C)C(C)(C)C	3341.0	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 2',3'-Dideoxycytidine-5'-monophosphate GC-MS (Non-derivatized) - 70eV, Positive	splash10-01ot-9700000000-52a86ac5c8cf3c1975ab	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 2',3'-Dideoxycytidine-5'-monophosphate GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 2',3'-Dideoxycytidine-5'-monophosphate 10V, Positive-QTOF	splash10-03di-0920000000-bda56b534fed760fc5ea	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 2',3'-Dideoxycytidine-5'-monophosphate 20V, Positive-QTOF	splash10-03di-3920000000-b4cac93110f44947b455	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 2',3'-Dideoxycytidine-5'-monophosphate 40V, Positive-QTOF	splash10-014i-9300000000-20708bc7d6be3c3d3a4f	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 2',3'-Dideoxycytidine-5'-monophosphate 10V, Negative-QTOF	splash10-002f-6090000000-473ce67bc68f9925c6d3	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 2',3'-Dideoxycytidine-5'-monophosphate 20V, Negative-QTOF	splash10-004l-9220000000-56f05c5e339d80f55f80	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 2',3'-Dideoxycytidine-5'-monophosphate 40V, Negative-QTOF	splash10-004i-9000000000-931276aa442780ffb419	2021-10-12	Wishart Lab	View Spectrum

NMR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted 1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

315523

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

355449

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for 2',3'-Dideoxycytidine-5'-monophosphate (HMDB0244310)

MOL for HMDB0244310 (2',3'-Dideoxycytidine-5'-monophosphate)

3D MOL for HMDB0244310 (2',3'-Dideoxycytidine-5'-monophosphate)

3D SDF for HMDB0244310 (2',3'-Dideoxycytidine-5'-monophosphate)

3D-SDF for HMDB0244310 (2',3'-Dideoxycytidine-5'-monophosphate)

PDB for HMDB0244310 (2',3'-Dideoxycytidine-5'-monophosphate)

3D PDB for HMDB0244310 (2',3'-Dideoxycytidine-5'-monophosphate)

SMILES for HMDB0244310 (2',3'-Dideoxycytidine-5'-monophosphate)

INCHI for HMDB0244310 (2',3'-Dideoxycytidine-5'-monophosphate)

Structure for HMDB0244310 (2',3'-Dideoxycytidine-5'-monophosphate)

3D Structure for HMDB0244310 (2',3'-Dideoxycytidine-5'-monophosphate)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra

NMR Spectra