Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 21:34:17 UTC
Update Date2021-09-26 22:52:08 UTC
HMDB IDHMDB0244410
Secondary Accession NumbersNone
Metabolite Identification
Common Name2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoate
Description2,5-dioxopyrrolidin-1-yl 4-(pyren-1-yl)butanoate belongs to the class of organic compounds known as pyrenes. Pyrenes are compounds containing a pyrene moiety, which consists four fused benzene rings, resulting in a flat aromatic system. Based on a literature review very few articles have been published on 2,5-dioxopyrrolidin-1-yl 4-(pyren-1-yl)butanoate. This compound has been identified in human blood as reported by (PMID: 31557052 ). 2,5-dioxopyrrolidin-1-yl 4-(pyren-1-yl)butanoate is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoate is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
2,5-Dioxopyrrolidin-1-yl 4-(pyren-1-yl)butanoic acidGenerator
1-Succinimidyl-3'-pyrene butyric acidMeSH
1-Succinimidyl-3'-pyrenebutyrateMeSH
1-Succinimidyl-3'-pyrenebutyric acidMeSH
Chemical FormulaC24H19NO4
Average Molecular Weight385.419
Monoisotopic Molecular Weight385.131408096
IUPAC Name2,5-dioxopyrrolidin-1-yl 4-(pyren-1-yl)butanoate
Traditional Name2,5-dioxopyrrolidin-1-yl 4-(pyren-1-yl)butanoate
CAS Registry NumberNot Available
SMILES
O=C(CCCC1=C2C=CC3=CC=CC4=C3C2=C(C=C1)C=C4)ON1C(=O)CCC1=O
InChI Identifier
InChI=1S/C24H19NO4/c26-20-13-14-21(27)25(20)29-22(28)6-2-3-15-7-8-18-10-9-16-4-1-5-17-11-12-19(15)24(18)23(16)17/h1,4-5,7-12H,2-3,6,13-14H2
InChI KeyYBNMDCCMCLUHBL-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyrenes. Pyrenes are compounds containing a pyrene moiety, which consists four fused benzene rings, resulting in a flat aromatic system.
KingdomOrganic compounds
Super ClassBenzenoids
ClassPyrenes
Sub ClassNot Available
Direct ParentPyrenes
Alternative Parents
Substituents
  • Pyrene
  • Phenanthrene
  • Naphthalene
  • Pyrrolidone
  • 2-pyrrolidone
  • Dicarboximide
  • Pyrrolidine
  • Carboxylic acid salt
  • Lactam
  • Azacycle
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organoheterocyclic compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Carbonyl group
  • Organic nitrogen compound
  • Organic salt
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.51ALOGPS
logP4.18ChemAxon
logS-6.8ALOGPS
pKa (Strongest Acidic)17.71ChemAxon
pKa (Strongest Basic)-7.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area63.68 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity107.79 m³·mol⁻¹ChemAxon
Polarizability41.53 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+197.030932474
DeepCCS[M-H]-194.64230932474
DeepCCS[M-2H]-228.88830932474
DeepCCS[M+Na]+204.11630932474
AllCCS[M+H]+193.832859911
AllCCS[M+H-H2O]+191.132859911
AllCCS[M+NH4]+196.432859911
AllCCS[M+Na]+197.132859911
AllCCS[M-H]-195.632859911
AllCCS[M+Na-2H]-195.232859911
AllCCS[M+HCOO]-195.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoateO=C(CCCC1=C2C=CC3=CC=CC4=C3C2=C(C=C1)C=C4)ON1C(=O)CCC1=O5276.0Standard polar33892256
2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoateO=C(CCCC1=C2C=CC3=CC=CC4=C3C2=C(C=C1)C=C4)ON1C(=O)CCC1=O3380.0Standard non polar33892256
2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoateO=C(CCCC1=C2C=CC3=CC=CC4=C3C2=C(C=C1)C=C4)ON1C(=O)CCC1=O3874.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoate GC-MS (Non-derivatized) - 70eV, Positivesplash10-00tf-7290000000-cab69fee017a6cecfefe2021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoate 10V, Positive-QTOFsplash10-000i-0029000000-831ee52cfd850502d8c42021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoate 20V, Positive-QTOFsplash10-009f-0091000000-e8425314e359f9e7537b2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoate 40V, Positive-QTOFsplash10-00tu-0090000000-420d006f4a780464cc0f2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoate 10V, Negative-QTOFsplash10-001i-0039000000-b5935c4437d620af28902021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoate 20V, Negative-QTOFsplash10-000w-9164000000-03fcf8e7d8112c6ccc9c2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,5-Dioxopyrrolidin-1-YL 4-(pyren-1-YL)butanoate 40V, Negative-QTOFsplash10-0uxr-3090000000-ea0269f744058fd36d442021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID115656
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]