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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-10 21:36:17 UTC

Update Date

2021-09-26 22:52:11 UTC

HMDB ID

HMDB0244447

Secondary Accession Numbers

None

Metabolite Identification

Common Name

12-Hydroxyheptadeca-5,8,10-trienoic acid

Description

12-hydroxyheptadeca-5,8,10-trienoic acid belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. Based on a literature review very few articles have been published on 12-hydroxyheptadeca-5,8,10-trienoic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). 12-hydroxyheptadeca-5,8,10-trienoic acid is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 12-Hydroxyheptadeca-5,8,10-trienoic acid is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0246941
     RDKit          3D
12(s)-Hydroxy-5,8,10-heptadeca-trienoic acid
 48 47  0  0  0  0  0  0  0  0999 V2000
   -6.9560   -0.2088   -0.7060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4276   -0.9127    0.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8889    0.0339    1.5582 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7804    0.8979    1.0680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5745    0.1665    0.5515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5482    1.2479    0.0892 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3129    1.9622    1.3303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4150    0.6997   -0.4528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3523    0.1857   -0.9612 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4815   -0.5959   -0.0237 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5810   -1.1642   -0.3657 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1977   -1.1560   -1.6743 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4996   -0.5366   -1.8307 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2336    0.0668   -0.9546 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0177    0.3323    0.4603 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0186   -0.3707    1.3342 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4555   -0.0588    1.0981 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0338   -0.5130   -0.1696 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5743   -1.4751   -0.8301 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1551    0.1654   -0.6658 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0216    0.0182   -0.6886 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7854   -0.9084   -1.5779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3351    0.6830   -0.9598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6832   -1.6677    0.2107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2728   -1.4655    1.0023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5530   -0.5117    2.4555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6989    0.7207    1.9180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0863    1.6304    0.2949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4234    1.4839    1.9558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0175   -0.4067    1.3021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7485   -0.4674   -0.3238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2139    1.9558   -0.4887 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6872    2.6964    1.0342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7158    1.1922   -1.7268 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0230    0.2478   -1.9808 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1277   -0.6846    1.0196 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1164   -1.7591    0.4255 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5152   -0.6737   -2.4357 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2592   -2.2690   -2.0361 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8875   -0.6233   -2.9040 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1830    0.5086   -1.4117 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0114    0.2663    0.8648 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2276    1.4864    0.5745 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7573   -0.2574    2.4204 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9307   -1.4964    1.1735 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0601   -0.4752    1.9591 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5868    1.0610    1.2329 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5639    0.9488   -0.1696 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  3
  9 10  1  0
 10 11  2  3
 11 12  1  0
 12 13  1  0
 13 14  2  3
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  2 24  1  0
  2 25  1  0
  3 26  1  0
  3 27  1  0
  4 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  6 32  1  0
  7 33  1  0
  8 34  1  0
  9 35  1  0
 10 36  1  0
 11 37  1  0
 12 38  1  0
 12 39  1  0
 13 40  1  0
 14 41  1  0
 15 42  1  0
 15 43  1  0
 16 44  1  0
 16 45  1  0
 17 46  1  0
 17 47  1  0
 20 48  1  0
M  END


  Mrv1533004241513462D          

 20 19  0  0  0  0            999 V2000
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7618    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1908    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9052    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9052    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6197    3.0789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6197    3.9039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3342    4.3164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3342    5.1414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0487    5.5539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0487    6.3789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7631    5.1414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  6  1  4  0  0  0
  8  9  2  0  0  0  0
 10  9  1  4  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 13 12  1  4  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0244447

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCC(O)C=CC=CCC=CCCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C17H28O3/c1-2-3-10-13-16(18)14-11-8-6-4-5-7-9-12-15-17(19)20/h5-8,11,14,16,18H,2-4,9-10,12-13,15H2,1H3,(H,19,20)

> <INCHI_KEY>
KUKJHGXXZWHSBG-UHFFFAOYSA-N

> <FORMULA>
C17H28O3

> <MOLECULAR_WEIGHT>
280.408

> <EXACT_MASS>
280.203844762

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
34.48032534588077

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
12-hydroxyheptadeca-5,8,10-trienoic acid

> <ALOGPS_LOGP>
4.99

> <JCHEM_LOGP>
4.384575405666666

> <ALOGPS_LOGS>
-4.28

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
17.795677863984817

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.889630655845193

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5759706509493094

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
86.5499

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.47e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
12-hydroxyheptadeca-5,8,10-trienoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0246941
     RDKit          3D
12(s)-Hydroxy-5,8,10-heptadeca-trienoic acid
 48 47  0  0  0  0  0  0  0  0999 V2000
   -6.9560   -0.2088   -0.7060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4276   -0.9127    0.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8889    0.0339    1.5582 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7804    0.8979    1.0680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5745    0.1665    0.5515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5482    1.2479    0.0892 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3129    1.9622    1.3303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4150    0.6997   -0.4528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3523    0.1857   -0.9612 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4815   -0.5959   -0.0237 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5810   -1.1642   -0.3657 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1977   -1.1560   -1.6743 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4996   -0.5366   -1.8307 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2336    0.0668   -0.9546 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0177    0.3323    0.4603 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0186   -0.3707    1.3342 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4555   -0.0588    1.0981 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0338   -0.5130   -0.1696 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5743   -1.4751   -0.8301 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1551    0.1654   -0.6658 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0216    0.0182   -0.6886 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7854   -0.9084   -1.5779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3351    0.6830   -0.9598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6832   -1.6677    0.2107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2728   -1.4655    1.0023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5530   -0.5117    2.4555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6989    0.7207    1.9180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0863    1.6304    0.2949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4234    1.4839    1.9558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0175   -0.4067    1.3021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7485   -0.4674   -0.3238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2139    1.9558   -0.4887 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6872    2.6964    1.0342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7158    1.1922   -1.7268 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0230    0.2478   -1.9808 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1277   -0.6846    1.0196 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1164   -1.7591    0.4255 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5152   -0.6737   -2.4357 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2592   -2.2690   -2.0361 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8875   -0.6233   -2.9040 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1830    0.5086   -1.4117 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0114    0.2663    0.8648 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2276    1.4864    0.5745 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7573   -0.2574    2.4204 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9307   -1.4964    1.1735 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0601   -0.4752    1.9591 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5868    1.0610    1.2329 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5639    0.9488   -0.1696 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  3
  9 10  1  0
 10 11  2  3
 11 12  1  0
 12 13  1  0
 13 14  2  3
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  2 24  1  0
  2 25  1  0
  3 26  1  0
  3 27  1  0
  4 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  6 32  1  0
  7 33  1  0
  8 34  1  0
  9 35  1  0
 10 36  1  0
 11 37  1  0
 12 38  1  0
 12 39  1  0
 13 40  1  0
 14 41  1  0
 15 42  1  0
 15 43  1  0
 16 44  1  0
 16 45  1  0
 17 46  1  0
 17 47  1  0
 20 48  1  0
M  END

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0       3.286   3.437   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.287   2.667   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.621   3.437   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.955   2.667   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       9.955   1.127   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      11.288   3.437   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.622   2.667   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.956   3.437   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      15.289   2.667   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      16.623   3.437   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      16.623   4.977   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      17.957   5.747   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      17.957   7.287   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      19.290   8.057   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      19.290   9.597   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      20.624  10.367   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      20.624  11.907   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      21.958   9.597   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   38    0
END

COMPND    HMDB0244451
HETATM    1  C1  UNL     1      -7.131   1.944   0.461  1.00  0.00           C  
HETATM    2  C2  UNL     1      -6.773   0.555   0.947  1.00  0.00           C  
HETATM    3  C3  UNL     1      -5.675   0.051  -0.005  1.00  0.00           C  
HETATM    4  C4  UNL     1      -5.249  -1.318   0.393  1.00  0.00           C  
HETATM    5  C5  UNL     1      -4.197  -1.912  -0.463  1.00  0.00           C  
HETATM    6  C6  UNL     1      -2.902  -1.187  -0.551  1.00  0.00           C  
HETATM    7  O1  UNL     1      -2.994   0.103  -1.056  1.00  0.00           O  
HETATM    8  C7  UNL     1      -1.981  -1.940  -1.436  1.00  0.00           C  
HETATM    9  C8  UNL     1      -0.740  -1.566  -1.649  1.00  0.00           C  
HETATM   10  C9  UNL     1      -0.162  -0.370  -1.029  1.00  0.00           C  
HETATM   11  C10 UNL     1       1.085  -0.037  -1.272  1.00  0.00           C  
HETATM   12  C11 UNL     1       1.677   1.168  -0.651  1.00  0.00           C  
HETATM   13  C12 UNL     1       2.835   0.713   0.173  1.00  0.00           C  
HETATM   14  C13 UNL     1       4.032   1.169  -0.110  1.00  0.00           C  
HETATM   15  C14 UNL     1       5.203   0.719   0.711  1.00  0.00           C  
HETATM   16  C15 UNL     1       6.153   0.041  -0.236  1.00  0.00           C  
HETATM   17  C16 UNL     1       7.362  -0.446   0.504  1.00  0.00           C  
HETATM   18  C17 UNL     1       8.106   0.680   1.081  1.00  0.00           C  
HETATM   19  O2  UNL     1       7.770   1.859   0.834  1.00  0.00           O  
HETATM   20  O3  UNL     1       9.207   0.485   1.919  1.00  0.00           O  
HETATM   21  H1  UNL     1      -6.367   2.627   0.902  1.00  0.00           H  
HETATM   22  H2  UNL     1      -8.163   2.230   0.746  1.00  0.00           H  
HETATM   23  H3  UNL     1      -6.997   1.994  -0.635  1.00  0.00           H  
HETATM   24  H4  UNL     1      -6.414   0.528   1.974  1.00  0.00           H  
HETATM   25  H5  UNL     1      -7.689  -0.088   0.818  1.00  0.00           H  
HETATM   26  H6  UNL     1      -6.097   0.091  -1.007  1.00  0.00           H  
HETATM   27  H7  UNL     1      -4.835   0.755   0.178  1.00  0.00           H  
HETATM   28  H8  UNL     1      -6.162  -1.977   0.281  1.00  0.00           H  
HETATM   29  H9  UNL     1      -5.015  -1.367   1.474  1.00  0.00           H  
HETATM   30  H10 UNL     1      -4.550  -2.158  -1.496  1.00  0.00           H  
HETATM   31  H11 UNL     1      -3.953  -2.925  -0.023  1.00  0.00           H  
HETATM   32  H12 UNL     1      -2.420  -1.186   0.468  1.00  0.00           H  
HETATM   33  H13 UNL     1      -2.575   0.180  -1.925  1.00  0.00           H  
HETATM   34  H14 UNL     1      -2.346  -2.825  -1.920  1.00  0.00           H  
HETATM   35  H15 UNL     1      -0.130  -2.168  -2.308  1.00  0.00           H  
HETATM   36  H16 UNL     1      -0.737   0.261  -0.366  1.00  0.00           H  
HETATM   37  H17 UNL     1       1.677  -0.648  -1.927  1.00  0.00           H  
HETATM   38  H18 UNL     1       0.976   1.663   0.056  1.00  0.00           H  
HETATM   39  H19 UNL     1       2.005   1.913  -1.390  1.00  0.00           H  
HETATM   40  H20 UNL     1       2.696   0.013   0.998  1.00  0.00           H  
HETATM   41  H21 UNL     1       4.187   1.855  -0.914  1.00  0.00           H  
HETATM   42  H22 UNL     1       4.855  -0.073   1.427  1.00  0.00           H  
HETATM   43  H23 UNL     1       5.606   1.584   1.246  1.00  0.00           H  
HETATM   44  H24 UNL     1       5.585  -0.822  -0.673  1.00  0.00           H  
HETATM   45  H25 UNL     1       6.416   0.721  -1.080  1.00  0.00           H  
HETATM   46  H26 UNL     1       7.040  -1.183   1.277  1.00  0.00           H  
HETATM   47  H27 UNL     1       8.050  -0.933  -0.236  1.00  0.00           H  
HETATM   48  H28 UNL     1       9.731   1.226   2.321  1.00  0.00           H  
CONECT    1    2   21   22   23
CONECT    2    3   24   25
CONECT    3    4   26   27
CONECT    4    5   28   29
CONECT    5    6   30   31
CONECT    6    7    8   32
CONECT    7   33
CONECT    8    9    9   34
CONECT    9   10   35
CONECT   10   11   11   36
CONECT   11   12   37
CONECT   12   13   38   39
CONECT   13   14   14   40
CONECT   14   15   41
CONECT   15   16   42   43
CONECT   16   17   44   45
CONECT   17   18   46   47
CONECT   18   19   19   20
CONECT   20   48
END

HMDB0246941
     RDKit          3D
12(s)-Hydroxy-5,8,10-heptadeca-trienoic acid
 48 47  0  0  0  0  0  0  0  0999 V2000
   -6.9560   -0.2088   -0.7060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4276   -0.9127    0.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8889    0.0339    1.5582 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7804    0.8979    1.0680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5745    0.1665    0.5515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5482    1.2479    0.0892 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3129    1.9622    1.3303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4150    0.6997   -0.4528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3523    0.1857   -0.9612 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4815   -0.5959   -0.0237 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5810   -1.1642   -0.3657 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1977   -1.1560   -1.6743 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4996   -0.5366   -1.8307 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2336    0.0668   -0.9546 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0177    0.3323    0.4603 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0186   -0.3707    1.3342 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4555   -0.0588    1.0981 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0338   -0.5130   -0.1696 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5743   -1.4751   -0.8301 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1551    0.1654   -0.6658 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0216    0.0182   -0.6886 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7854   -0.9084   -1.5779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3351    0.6830   -0.9598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6832   -1.6677    0.2107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2728   -1.4655    1.0023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5530   -0.5117    2.4555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6989    0.7207    1.9180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0863    1.6304    0.2949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4234    1.4839    1.9558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0175   -0.4067    1.3021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7485   -0.4674   -0.3238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2139    1.9558   -0.4887 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6872    2.6964    1.0342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7158    1.1922   -1.7268 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0230    0.2478   -1.9808 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1277   -0.6846    1.0196 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1164   -1.7591    0.4255 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5152   -0.6737   -2.4357 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2592   -2.2690   -2.0361 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8875   -0.6233   -2.9040 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1830    0.5086   -1.4117 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0114    0.2663    0.8648 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2276    1.4864    0.5745 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7573   -0.2574    2.4204 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9307   -1.4964    1.1735 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0601   -0.4752    1.9591 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5868    1.0610    1.2329 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5639    0.9488   -0.1696 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  3
  9 10  1  0
 10 11  2  3
 11 12  1  0
 12 13  1  0
 13 14  2  3
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  2 24  1  0
  2 25  1  0
  3 26  1  0
  3 27  1  0
  4 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  6 32  1  0
  7 33  1  0
  8 34  1  0
  9 35  1  0
 10 36  1  0
 11 37  1  0
 12 38  1  0
 12 39  1  0
 13 40  1  0
 14 41  1  0
 15 42  1  0
 15 43  1  0
 16 44  1  0
 16 45  1  0
 17 46  1  0
 17 47  1  0
 20 48  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
12-Hydroxyheptadeca-5,8,10-trienoate	Generator
12-Hydroxy-5,8,10-heptadecatrienoic acid, (e,Z,Z)-isomer	MeSH, HMDB, HMDB
12-Hydroxy-5,8,10-heptadecatrienoic acid, (S)-isomer	MeSH, HMDB, HMDB
Hydroxyheptadecatrienoic acid	MeSH, HMDB, HMDB
12-L-Hydroxy-5,8,10-heptadecatrienoic acid	MeSH, HMDB, HMDB
12-Hydroxy-5,8,10-heptadecatrienoic acid, (S)-(Z,e,e)-isomer	MeSH, HMDB, HMDB
12-Hydroxy-5,8,10-heptadecatrienoic acid	MeSH, HMDB
12-Hydroxy-5,8,10-heptadecatrienoic acid, (S)-(e,Z,Z)-isomer	MeSH, HMDB, HMDB
12-Hydroxy-5,8,10-heptadecatrienoate	Generator

Chemical Formula

C₁₇H₂₈O₃

Average Molecular Weight

280.408

Monoisotopic Molecular Weight

280.203844762

IUPAC Name

12-hydroxyheptadeca-5,8,10-trienoic acid

Traditional Name

12-hydroxyheptadeca-5,8,10-trienoic acid

CAS Registry Number

Not Available

SMILES

CCCCCC(O)C=CC=CCC=CCCCC(O)=O

InChI Identifier

InChI=1S/C17H28O3/c1-2-3-10-13-16(18)14-11-8-6-4-5-7-9-12-15-17(19)20/h5-8,11,14,16,18H,2-4,9-10,12-13,15H2,1H3,(H,19,20)

InChI Key

KUKJHGXXZWHSBG-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Hydroxy fatty acid
Unsaturated fatty acid
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.99	ALOGPS
logP	4.38	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	4.89	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	86.55 m³·mol⁻¹	ChemAxon
Polarizability	34.48 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	170.823	30932474
DeepCCS	[M-H]-	167.048	30932474
DeepCCS	[M-2H]-	203.554	30932474
DeepCCS	[M+Na]+	179.638	30932474
AllCCS	[M+H]+	174.9	32859911
AllCCS	[M+H-H2O]+	171.7	32859911
AllCCS	[M+NH4]+	177.8	32859911
AllCCS	[M+Na]+	178.6	32859911
AllCCS	[M-H]-	174.7	32859911
AllCCS	[M+Na-2H]-	176.0	32859911
AllCCS	[M+HCOO]-	177.6	32859911

Predicted Kovats Retention Indices

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
12-Hydroxyheptadeca-5,8,10-trienoic acid,1TBDMS,isomer #1	CCCCCC(C=CC=CCC=CCCCC(=O)O)O[Si](C)(C)C(C)(C)C	2678.0	Semi standard non polar	33892256
12-Hydroxyheptadeca-5,8,10-trienoic acid,1TBDMS,isomer #1	CCCCCC(C=CC=CCC=CCCCC(=O)O)O[Si](C)(C)C(C)(C)C	2452.6	Standard non polar	33892256
12-Hydroxyheptadeca-5,8,10-trienoic acid,1TBDMS,isomer #1	CCCCCC(C=CC=CCC=CCCCC(=O)O)O[Si](C)(C)C(C)(C)C	2844.8	Standard polar	33892256
12-Hydroxyheptadeca-5,8,10-trienoic acid,1TBDMS,isomer #2	CCCCCC(O)C=CC=CCC=CCCCC(=O)O[Si](C)(C)C(C)(C)C	2590.1	Semi standard non polar	33892256
12-Hydroxyheptadeca-5,8,10-trienoic acid,1TBDMS,isomer #2	CCCCCC(O)C=CC=CCC=CCCCC(=O)O[Si](C)(C)C(C)(C)C	2484.1	Standard non polar	33892256
12-Hydroxyheptadeca-5,8,10-trienoic acid,1TBDMS,isomer #2	CCCCCC(O)C=CC=CCC=CCCCC(=O)O[Si](C)(C)C(C)(C)C	2888.3	Standard polar	33892256
12-Hydroxyheptadeca-5,8,10-trienoic acid,2TBDMS,isomer #1	CCCCCC(C=CC=CCC=CCCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	2886.3	Semi standard non polar	33892256
12-Hydroxyheptadeca-5,8,10-trienoic acid,2TBDMS,isomer #1	CCCCCC(C=CC=CCC=CCCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	2745.7	Standard non polar	33892256
12-Hydroxyheptadeca-5,8,10-trienoic acid,2TBDMS,isomer #1	CCCCCC(C=CC=CCC=CCCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	2660.8	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid GC-MS (Non-derivatized) - 70eV, Positive	splash10-0596-7940000000-88adc904734528989f76	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid 10V, Positive-QTOF	splash10-03di-0590000000-86ac00a156c7f3f18c2c	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid 20V, Positive-QTOF	splash10-01wb-3920000000-6040d9c2d707a1656b95	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid 40V, Positive-QTOF	splash10-066v-9400000000-281fc4c65ccd705a48a1	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid 10V, Negative-QTOF	splash10-01t9-0090000000-901f14c9bb947096b214	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid 20V, Negative-QTOF	splash10-03fr-0390000000-c572e21d1735ff2c9d4c	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 12-Hydroxyheptadeca-5,8,10-trienoic acid 40V, Negative-QTOF	splash10-052f-9410000000-8529271056414c39c9f7	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

1371

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

1414

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for 12-Hydroxyheptadeca-5,8,10-trienoic acid (HMDB0244447)

MOL for HMDB0244447 (12-Hydroxyheptadeca-5,8,10-trienoic acid)

3D MOL for HMDB0244447 (12-Hydroxyheptadeca-5,8,10-trienoic acid)

3D SDF for HMDB0244447 (12-Hydroxyheptadeca-5,8,10-trienoic acid)

3D-SDF for HMDB0244447 (12-Hydroxyheptadeca-5,8,10-trienoic acid)

PDB for HMDB0244447 (12-Hydroxyheptadeca-5,8,10-trienoic acid)

3D PDB for HMDB0244447 (12-Hydroxyheptadeca-5,8,10-trienoic acid)

SMILES for HMDB0244447 (12-Hydroxyheptadeca-5,8,10-trienoic acid)

INCHI for HMDB0244447 (12-Hydroxyheptadeca-5,8,10-trienoic acid)

Structure for HMDB0244447 (12-Hydroxyheptadeca-5,8,10-trienoic acid)

3D Structure for HMDB0244447 (12-Hydroxyheptadeca-5,8,10-trienoic acid)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Derivatized

GC-MS Spectra

MS/MS Spectra