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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 21:39:11 UTC
Update Date2021-09-26 22:52:16 UTC
HMDB IDHMDB0244497
Secondary Accession NumbersNone
Metabolite Identification
Common Name3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate)
DescriptionACMC-20msvu belongs to the class of organic compounds known as isoleucine and derivatives. Isoleucine and derivatives are compounds containing isoleucine or a derivative thereof resulting from reaction of isoleucine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. Based on a literature review very few articles have been published on ACMC-20msvu. This compound has been identified in human blood as reported by (PMID: 31557052 ). 3'-azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate) is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate) is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylic acid)Generator
Chemical FormulaC16H18N6O5
Average Molecular Weight374.357
Monoisotopic Molecular Weight374.133867704
IUPAC Name[3-azido-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)oxolan-2-yl]methyl 1-methyl-1,4-dihydropyridine-3-carboxylate
Traditional Name[3-azido-5-(2,4-dioxo-3H-pyrimidin-1-yl)oxolan-2-yl]methyl 1-methyl-4H-pyridine-3-carboxylate
CAS Registry NumberNot Available
SMILES
CN1C=CCC(=C1)C(=O)OCC1OC(CC1N=[N+]=[N-])N1C=CC(=O)NC1=O
InChI Identifier
InChI=1S/C16H18N6O5/c1-21-5-2-3-10(8-21)15(24)26-9-12-11(19-20-17)7-14(27-12)22-6-4-13(23)18-16(22)25/h2,4-6,8,11-12,14H,3,7,9H2,1H3,(H,18,23,25)
InChI KeyFQUIMJFYHVMINU-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as isoleucine and derivatives. Isoleucine and derivatives are compounds containing isoleucine or a derivative thereof resulting from reaction of isoleucine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentIsoleucine and derivatives
Alternative Parents
Substituents
  • Isoleucine or derivatives
  • Alpha-amino acid amide
  • Monocyclic benzene moiety
  • Fatty amide
  • Fatty acyl
  • Benzenoid
  • N-acyl-amine
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Organic nitrogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Primary amine
  • Primary aliphatic amine
  • Hydrocarbon derivative
  • Organic oxide
  • Carbonyl group
  • Organic oxygen compound
  • Amine
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP1.05ALOGPS
logP0.7ChemAxon
logS-2.1ALOGPS
pKa (Strongest Acidic)9.71ChemAxon
pKa (Strongest Basic)-1.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area117.61 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity92.17 m³·mol⁻¹ChemAxon
Polarizability36.52 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+189.56330932474
DeepCCS[M-H]-186.66730932474
DeepCCS[M-2H]-222.08730932474
DeepCCS[M+Na]+198.37830932474
AllCCS[M+H]+186.132859911
AllCCS[M+H-H2O]+183.332859911
AllCCS[M+NH4]+188.732859911
AllCCS[M+Na]+189.432859911
AllCCS[M-H]-185.032859911
AllCCS[M+Na-2H]-184.732859911
AllCCS[M+HCOO]-184.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate)CN1C=CCC(=C1)C(=O)OCC1OC(CC1N=[N+]=[N-])N1C=CC(=O)NC1=O4421.6Standard polar33892256
3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate)CN1C=CCC(=C1)C(=O)OCC1OC(CC1N=[N+]=[N-])N1C=CC(=O)NC1=O2971.4Standard non polar33892256
3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate)CN1C=CCC(=C1)C(=O)OCC1OC(CC1N=[N+]=[N-])N1C=CC(=O)NC1=O3375.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate),1TMS,isomer #1CN1C=CCC(C(=O)OCC2OC(N3C=CC(=O)N([Si](C)(C)C)C3=O)CC2N=[N+]=[N-])=C13376.2Semi standard non polar33892256
3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate),1TMS,isomer #1CN1C=CCC(C(=O)OCC2OC(N3C=CC(=O)N([Si](C)(C)C)C3=O)CC2N=[N+]=[N-])=C13104.5Standard non polar33892256
3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate),1TMS,isomer #1CN1C=CCC(C(=O)OCC2OC(N3C=CC(=O)N([Si](C)(C)C)C3=O)CC2N=[N+]=[N-])=C14837.6Standard polar33892256
3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate),1TBDMS,isomer #1CN1C=CCC(C(=O)OCC2OC(N3C=CC(=O)N([Si](C)(C)C(C)(C)C)C3=O)CC2N=[N+]=[N-])=C13558.2Semi standard non polar33892256
3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate),1TBDMS,isomer #1CN1C=CCC(C(=O)OCC2OC(N3C=CC(=O)N([Si](C)(C)C(C)(C)C)C3=O)CC2N=[N+]=[N-])=C13314.1Standard non polar33892256
3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate),1TBDMS,isomer #1CN1C=CCC(C(=O)OCC2OC(N3C=CC(=O)N([Si](C)(C)C(C)(C)C)C3=O)CC2N=[N+]=[N-])=C14889.4Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate) GC-MS (Non-derivatized) - 70eV, Positivesplash10-016r-9321000000-c6d7cec5fd26756452132021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3'-Azido-2',3'-dideoxyuridine 5'-(1,4-dihydro-1-methyl-3-pyridinecarboxylate) GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID109332
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound122627
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]