Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 21:51:49 UTC
Update Date2021-09-26 22:52:39 UTC
HMDB IDHMDB0244724
Secondary Accession NumbersNone
Metabolite Identification
Common Name16-Hydroxypregnenolone
DescriptionAC1N3SCY belongs to the class of organic compounds known as gluco/mineralocorticoids, progestogins and derivatives. These are steroids with a structure based on a hydroxylated prostane moiety. AC1N3SCY is an extremely weak basic (essentially neutral) compound (based on its pKa). This compound has been identified in human blood as reported by (PMID: 31557052 ). 16-hydroxypregnenolone is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 16-Hydroxypregnenolone is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC21H32O3
Average Molecular Weight332.484
Monoisotopic Molecular Weight332.23514489
IUPAC Name1-{5,13-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-14-yl}ethan-1-one
Traditional Name1-{5,13-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-14-yl}ethanone
CAS Registry NumberNot Available
SMILES
CC(=O)C1C(O)CC2C3CC=C4CC(O)CCC4(C)C3CCC12C
InChI Identifier
InChI=1S/C21H32O3/c1-12(22)19-18(24)11-17-15-5-4-13-10-14(23)6-8-20(13,2)16(15)7-9-21(17,19)3/h4,14-19,23-24H,5-11H2,1-3H3
InChI KeyZAKJZPQDUPCXSD-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as gluco/mineralocorticoids, progestogins and derivatives. These are steroids with a structure based on a hydroxylated prostane moiety.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassPregnane steroids
Direct ParentGluco/mineralocorticoids, progestogins and derivatives
Alternative Parents
Substituents
  • Progestogin-skeleton
  • 20-oxosteroid
  • 3-hydroxy-delta-5-steroid
  • 3-hydroxysteroid
  • 16-hydroxysteroid
  • Oxosteroid
  • Hydroxysteroid
  • Delta-5-steroid
  • Cyclic alcohol
  • Secondary alcohol
  • Ketone
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Alcohol
  • Organooxygen compound
  • Organic oxide
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.79ALOGPS
logP2.35ChemAxon
logS-3.8ALOGPS
pKa (Strongest Acidic)14.75ChemAxon
pKa (Strongest Basic)-1.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area57.53 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity95.27 m³·mol⁻¹ChemAxon
Polarizability38.88 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-209.63830932474
DeepCCS[M+Na]+184.86530932474
AllCCS[M+H]+185.432859911
AllCCS[M+H-H2O]+182.632859911
AllCCS[M+NH4]+188.032859911
AllCCS[M+Na]+188.732859911
AllCCS[M-H]-188.932859911
AllCCS[M+Na-2H]-189.332859911
AllCCS[M+HCOO]-190.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
16-HydroxypregnenoloneCC(=O)C1C(O)CC2C3CC=C4CC(O)CCC4(C)C3CCC12C2695.0Standard polar33892256
16-HydroxypregnenoloneCC(=O)C1C(O)CC2C3CC=C4CC(O)CCC4(C)C3CCC12C2752.8Standard non polar33892256
16-HydroxypregnenoloneCC(=O)C1C(O)CC2C3CC=C4CC(O)CCC4(C)C3CCC12C2981.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
16-Hydroxypregnenolone,3TMS,isomer #1CC(O[Si](C)(C)C)=C1C(O[Si](C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C)CCC4(C)C3CCC12C2963.6Semi standard non polar33892256
16-Hydroxypregnenolone,3TMS,isomer #1CC(O[Si](C)(C)C)=C1C(O[Si](C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C)CCC4(C)C3CCC12C2949.3Standard non polar33892256
16-Hydroxypregnenolone,3TMS,isomer #1CC(O[Si](C)(C)C)=C1C(O[Si](C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C)CCC4(C)C3CCC12C3271.5Standard polar33892256
16-Hydroxypregnenolone,3TMS,isomer #2C=C(O[Si](C)(C)C)C1C(O[Si](C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C)CCC4(C)C3CCC21C2895.8Semi standard non polar33892256
16-Hydroxypregnenolone,3TMS,isomer #2C=C(O[Si](C)(C)C)C1C(O[Si](C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C)CCC4(C)C3CCC21C2910.2Standard non polar33892256
16-Hydroxypregnenolone,3TMS,isomer #2C=C(O[Si](C)(C)C)C1C(O[Si](C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C)CCC4(C)C3CCC21C3328.4Standard polar33892256
16-Hydroxypregnenolone,3TBDMS,isomer #1CC(O[Si](C)(C)C(C)(C)C)=C1C(O[Si](C)(C)C(C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C(C)(C)C)CCC4(C)C3CCC12C3634.2Semi standard non polar33892256
16-Hydroxypregnenolone,3TBDMS,isomer #1CC(O[Si](C)(C)C(C)(C)C)=C1C(O[Si](C)(C)C(C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C(C)(C)C)CCC4(C)C3CCC12C3725.0Standard non polar33892256
16-Hydroxypregnenolone,3TBDMS,isomer #1CC(O[Si](C)(C)C(C)(C)C)=C1C(O[Si](C)(C)C(C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C(C)(C)C)CCC4(C)C3CCC12C3557.5Standard polar33892256
16-Hydroxypregnenolone,3TBDMS,isomer #2C=C(O[Si](C)(C)C(C)(C)C)C1C(O[Si](C)(C)C(C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C(C)(C)C)CCC4(C)C3CCC21C3608.5Semi standard non polar33892256
16-Hydroxypregnenolone,3TBDMS,isomer #2C=C(O[Si](C)(C)C(C)(C)C)C1C(O[Si](C)(C)C(C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C(C)(C)C)CCC4(C)C3CCC21C3650.9Standard non polar33892256
16-Hydroxypregnenolone,3TBDMS,isomer #2C=C(O[Si](C)(C)C(C)(C)C)C1C(O[Si](C)(C)C(C)(C)C)CC2C3CC=C4CC(O[Si](C)(C)C(C)(C)C)CCC4(C)C3CCC21C3582.6Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (Non-derivatized) - 70eV, Positivesplash10-0g6u-1196000000-fca8d9ea99b534b0ed862021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TMS_1_4) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TMS_2_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TMS_2_3) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TMS_2_4) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TMS_2_5) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TBDMS_1_4) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TBDMS_2_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TBDMS_2_3) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TBDMS_2_4) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 16-Hydroxypregnenolone GC-MS (TBDMS_2_5) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 16-Hydroxypregnenolone 10V, Positive-QTOFsplash10-00lr-0039000000-8986a0c163c3ed8436822021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 16-Hydroxypregnenolone 20V, Positive-QTOFsplash10-03y1-1291000000-ee7dc7fb5b37858e33f92021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 16-Hydroxypregnenolone 40V, Positive-QTOFsplash10-052f-5920000000-6724748d300fade489212021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 16-Hydroxypregnenolone 10V, Negative-QTOFsplash10-001i-0009000000-624be9df633e48f47ffc2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 16-Hydroxypregnenolone 20V, Negative-QTOFsplash10-0229-0094000000-58f282d618d6762550b72021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 16-Hydroxypregnenolone 40V, Negative-QTOFsplash10-00ri-0091000000-6004e6ad29ce515befd72021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound4092289
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]