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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 01:06:02 UTC
Update Date2022-11-23 21:42:16 UTC
HMDB IDHMDB0247946
Secondary Accession NumbersNone
Metabolite Identification
Common NameAclacinomycin N
Descriptionmethyl 4-{[4-(dimethylamino)-5-({4-hydroxy-5-[(5-hydroxy-6-methyloxan-2-yl)oxy]-6-methyloxan-2-yl}oxy)-6-methyloxan-2-yl]oxy}-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate belongs to the class of organic compounds known as dihydropyridinecarboxylic acids and derivatives. Dihydropyridinecarboxylic acids and derivatives are compounds containing a dihydropyridine moiety bearing a carboxylic acid group. Based on a literature review very few articles have been published on methyl 4-{[4-(dimethylamino)-5-({4-hydroxy-5-[(5-hydroxy-6-methyloxan-2-yl)oxy]-6-methyloxan-2-yl}oxy)-6-methyloxan-2-yl]oxy}-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate. This compound has been identified in human blood as reported by (PMID: 31557052 ). Aclacinomycin n is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Aclacinomycin N is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
Methyl 4-{[4-(dimethylamino)-5-({4-hydroxy-5-[(5-hydroxy-6-methyloxan-2-yl)oxy]-6-methyloxan-2-yl}oxy)-6-methyloxan-2-yl]oxy}-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylic acidGenerator
Chemical FormulaC42H55NO15
Average Molecular Weight813.894
Monoisotopic Molecular Weight813.357170075
IUPAC Namemethyl 4-{[4-(dimethylamino)-5-({4-hydroxy-5-[(5-hydroxy-6-methyloxan-2-yl)oxy]-6-methyloxan-2-yl}oxy)-6-methyloxan-2-yl]oxy}-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate
Traditional Namemethyl 4-{[4-(dimethylamino)-5-({4-hydroxy-5-[(5-hydroxy-6-methyloxan-2-yl)oxy]-6-methyloxan-2-yl}oxy)-6-methyloxan-2-yl]oxy}-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-3,4-dihydro-1H-tetracene-1-carboxylate
CAS Registry NumberNot Available
SMILES
CCC1(O)CC(OC2CC(C(OC3CC(O)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)N(C)C)C2=C(O)C3=C(C=C2C1C(=O)OC)C(=O)C1=CC=CC(O)=C1C3=O
InChI Identifier
InChI=1S/C42H55NO15/c1-8-42(51)17-28(33-22(35(42)41(50)52-7)14-23-34(38(33)49)37(48)32-21(36(23)47)10-9-11-26(32)45)56-30-15-24(43(5)6)39(19(3)54-30)58-31-16-27(46)40(20(4)55-31)57-29-13-12-25(44)18(2)53-29/h9-11,14,18-20,24-25,27-31,35,39-40,44-46,49,51H,8,12-13,15-17H2,1-7H3
InChI KeyCPUWOKRFRYWIHK-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dihydropyridinecarboxylic acids and derivatives. Dihydropyridinecarboxylic acids and derivatives are compounds containing a dihydropyridine moiety bearing a carboxylic acid group.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyridines and derivatives
Sub ClassHydropyridines
Direct ParentDihydropyridinecarboxylic acids and derivatives
Alternative Parents
Substituents
  • Dihydropyridinecarboxylic acid derivative
  • Nitrobenzene
  • Nitroaromatic compound
  • Monocyclic benzene moiety
  • Dicarboxylic acid or derivatives
  • Benzenoid
  • Methyl ester
  • Enoate ester
  • Alpha,beta-unsaturated carboxylic ester
  • Vinylogous amide
  • Organic nitro compound
  • Carboxylic acid ester
  • C-nitro compound
  • Amino acid or derivatives
  • Azacycle
  • Propargyl-type 1,3-dipolar organic compound
  • Organic 1,3-dipolar compound
  • Carboxylic acid derivative
  • Allyl-type 1,3-dipolar organic compound
  • Secondary aliphatic amine
  • Enamine
  • Organic oxoazanium
  • Secondary amine
  • Organopnictogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Organic nitrogen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Organic oxygen compound
  • Amine
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.35ALOGPS
logP3.56ChemAxon
logS-3.5ALOGPS
pKa (Strongest Acidic)7.47ChemAxon
pKa (Strongest Basic)8.64ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count15ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area220.21 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity204.76 m³·mol⁻¹ChemAxon
Polarizability87.27 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+268.62430932474
DeepCCS[M-H]-266.79930932474
DeepCCS[M-2H]-300.74430932474
DeepCCS[M+Na]+274.51930932474
AllCCS[M+H]+271.932859911
AllCCS[M+H-H2O]+272.132859911
AllCCS[M+NH4]+271.632859911
AllCCS[M+Na]+271.632859911
AllCCS[M-H]-237.232859911
AllCCS[M+Na-2H]-241.832859911
AllCCS[M+HCOO]-247.032859911

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
aclacinomycin N,1TMS,isomer #1CCC1(O[Si](C)(C)C)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O)C1C(=O)OC5724.1Semi standard non polar33892256
aclacinomycin N,1TMS,isomer #1CCC1(O[Si](C)(C)C)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O)C1C(=O)OC5569.8Standard non polar33892256
aclacinomycin N,1TMS,isomer #1CCC1(O[Si](C)(C)C)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O)C1C(=O)OC7819.3Standard polar33892256
aclacinomycin N,1TMS,isomer #2CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O[Si](C)(C)C)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O)C1C(=O)OC5737.7Semi standard non polar33892256
aclacinomycin N,1TMS,isomer #2CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O[Si](C)(C)C)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O)C1C(=O)OC5505.4Standard non polar33892256
aclacinomycin N,1TMS,isomer #2CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O[Si](C)(C)C)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O)C1C(=O)OC7665.8Standard polar33892256
aclacinomycin N,1TMS,isomer #3CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O[Si](C)(C)C)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O)C1C(=O)OC5740.5Semi standard non polar33892256
aclacinomycin N,1TMS,isomer #3CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O[Si](C)(C)C)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O)C1C(=O)OC5612.2Standard non polar33892256
aclacinomycin N,1TMS,isomer #3CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O[Si](C)(C)C)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O)C1C(=O)OC7698.0Standard polar33892256
aclacinomycin N,1TMS,isomer #4CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O[Si](C)(C)C)C1C(=O)OC5730.2Semi standard non polar33892256
aclacinomycin N,1TMS,isomer #4CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O[Si](C)(C)C)C1C(=O)OC5577.2Standard non polar33892256
aclacinomycin N,1TMS,isomer #4CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O)=C4C(=O)C3=C2O[Si](C)(C)C)C1C(=O)OC7755.6Standard polar33892256
aclacinomycin N,1TMS,isomer #5CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O[Si](C)(C)C)=C4C(=O)C3=C2O)C1C(=O)OC5776.9Semi standard non polar33892256
aclacinomycin N,1TMS,isomer #5CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O[Si](C)(C)C)=C4C(=O)C3=C2O)C1C(=O)OC5593.4Standard non polar33892256
aclacinomycin N,1TMS,isomer #5CCC1(O)CC(OC2CC(N(C)C)C(OC3CC(O)C(OC4CCC(O)C(C)O4)C(C)O3)C(C)O2)C2=C(C=C3C(=O)C4=CC=CC(O[Si](C)(C)C)=C4C(=O)C3=C2O)C1C(=O)OC7739.1Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aclacinomycin N 10V, Positive-QTOFsplash10-0ik9-2411423790-51404e51c24f4d42ba092021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aclacinomycin N 20V, Positive-QTOFsplash10-0f8a-3941151210-18e8eab377da7ffdbd082021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aclacinomycin N 40V, Positive-QTOFsplash10-0002-4900000200-a809f5f67aee8df1f3452021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aclacinomycin N 10V, Negative-QTOFsplash10-03di-0009620220-07d9dbf00d6401d081a42021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aclacinomycin N 20V, Negative-QTOFsplash10-002f-3709101110-d118e41678922a6d4ce52021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aclacinomycin N 40V, Negative-QTOFsplash10-004i-1109111100-47d3b4596975cd7ffd512021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]