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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 01:10:34 UTC
Update Date2021-09-26 22:58:04 UTC
HMDB IDHMDB0248021
Secondary Accession NumbersNone
Metabolite Identification
Common NamePhoenicoxanthin
DescriptionPhoenicoxanthin belongs to the class of organic compounds known as xanthophylls. These are carotenoids containing an oxygenated carotene backbone. Carotenes are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family. Xanthophylls arise by oxygenation of the carotene backbone. Based on a literature review a significant number of articles have been published on Phoenicoxanthin. This compound has been identified in human blood as reported by (PMID: 31557052 ). Phoenicoxanthin is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Phoenicoxanthin is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC40H52O3
Average Molecular Weight580.853
Monoisotopic Molecular Weight580.391645534
IUPAC Name6-hydroxy-2,4,4-trimethyl-3-[3,7,12,16-tetramethyl-18-(2,6,6-trimethyl-3-oxocyclohex-1-en-1-yl)octadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]cyclohex-2-en-1-one
Traditional Name6-hydroxy-2,4,4-trimethyl-3-[3,7,12,16-tetramethyl-18-(2,6,6-trimethyl-3-oxocyclohex-1-en-1-yl)octadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]cyclohex-2-en-1-one
CAS Registry NumberNot Available
SMILES
CC(C=CC=C(C)C=CC1=C(C)C(=O)CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(=O)C(O)CC1(C)C
InChI Identifier
InChI=1S/C40H52O3/c1-28(17-13-19-30(3)21-23-34-32(5)36(41)25-26-39(34,7)8)15-11-12-16-29(2)18-14-20-31(4)22-24-35-33(6)38(43)37(42)27-40(35,9)10/h11-24,37,42H,25-27H2,1-10H3
InChI KeyOOUTWVMJGMVRQF-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as xanthophylls. These are carotenoids containing an oxygenated carotene backbone. Carotenes are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family. Xanthophylls arise by oxygenation of the carotene backbone.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTetraterpenoids
Direct ParentXanthophylls
Alternative Parents
Substituents
  • Xanthophyll
  • Cyclohexenone
  • Cyclic ketone
  • Secondary alcohol
  • Ketone
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP8.15ALOGPS
logP8.92ChemAxon
logS-6.1ALOGPS
pKa (Strongest Acidic)13.37ChemAxon
pKa (Strongest Basic)-3.5ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area54.37 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity194.49 m³·mol⁻¹ChemAxon
Polarizability72.11 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+242.32330932474
DeepCCS[M-H]-240.11930932474
DeepCCS[M-2H]-273.35930932474
DeepCCS[M+Na]+248.23530932474
AllCCS[M+H]+256.532859911
AllCCS[M+H-H2O]+254.832859911
AllCCS[M+NH4]+258.132859911
AllCCS[M+Na]+258.632859911
AllCCS[M-H]-230.132859911
AllCCS[M+Na-2H]-233.832859911
AllCCS[M+HCOO]-238.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PhoenicoxanthinCC(C=CC=C(C)C=CC1=C(C)C(=O)CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(=O)C(O)CC1(C)C6487.0Standard polar33892256
PhoenicoxanthinCC(C=CC=C(C)C=CC1=C(C)C(=O)CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(=O)C(O)CC1(C)C4890.4Standard non polar33892256
PhoenicoxanthinCC(C=CC=C(C)C=CC1=C(C)C(=O)CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(=O)C(O)CC1(C)C4968.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Phoenicoxanthin,2TMS,isomer #1CC(C=CC=C(C)C=CC1=C(C)C(=O)CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)CC1(C)C4734.4Semi standard non polar33892256
Phoenicoxanthin,2TMS,isomer #1CC(C=CC=C(C)C=CC1=C(C)C(=O)CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)CC1(C)C4590.4Standard non polar33892256
Phoenicoxanthin,2TMS,isomer #1CC(C=CC=C(C)C=CC1=C(C)C(=O)CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)CC1(C)C4656.8Standard polar33892256
Phoenicoxanthin,2TMS,isomer #2CC(C=CC=C(C)C=CC1=C(C)C(=O)C(O[Si](C)(C)C)CC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=CCC1(C)C4797.3Semi standard non polar33892256
Phoenicoxanthin,2TMS,isomer #2CC(C=CC=C(C)C=CC1=C(C)C(=O)C(O[Si](C)(C)C)CC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=CCC1(C)C4529.6Standard non polar33892256
Phoenicoxanthin,2TMS,isomer #2CC(C=CC=C(C)C=CC1=C(C)C(=O)C(O[Si](C)(C)C)CC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=CCC1(C)C4668.5Standard polar33892256
Phoenicoxanthin,2TMS,isomer #3CC(C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=C(O)CC1(C)C4706.6Semi standard non polar33892256
Phoenicoxanthin,2TMS,isomer #3CC(C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=C(O)CC1(C)C4411.2Standard non polar33892256
Phoenicoxanthin,2TMS,isomer #3CC(C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=C(O)CC1(C)C4702.7Standard polar33892256
Phoenicoxanthin,3TMS,isomer #1CC(C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)CC1(C)C4590.7Semi standard non polar33892256
Phoenicoxanthin,3TMS,isomer #1CC(C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)CC1(C)C4400.5Standard non polar33892256
Phoenicoxanthin,3TMS,isomer #1CC(C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)CC1(C)C4625.5Standard polar33892256
Phoenicoxanthin,2TBDMS,isomer #1CC(C=CC=C(C)C=CC1=C(C)C(=O)CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)CC1(C)C5214.8Semi standard non polar33892256
Phoenicoxanthin,2TBDMS,isomer #1CC(C=CC=C(C)C=CC1=C(C)C(=O)CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)CC1(C)C5057.9Standard non polar33892256
Phoenicoxanthin,2TBDMS,isomer #1CC(C=CC=C(C)C=CC1=C(C)C(=O)CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)CC1(C)C4784.8Standard polar33892256
Phoenicoxanthin,2TBDMS,isomer #2CC(C=CC=C(C)C=CC1=C(C)C(=O)C(O[Si](C)(C)C(C)(C)C)CC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=CCC1(C)C5245.3Semi standard non polar33892256
Phoenicoxanthin,2TBDMS,isomer #2CC(C=CC=C(C)C=CC1=C(C)C(=O)C(O[Si](C)(C)C(C)(C)C)CC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=CCC1(C)C4940.0Standard non polar33892256
Phoenicoxanthin,2TBDMS,isomer #2CC(C=CC=C(C)C=CC1=C(C)C(=O)C(O[Si](C)(C)C(C)(C)C)CC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=CCC1(C)C4801.8Standard polar33892256
Phoenicoxanthin,2TBDMS,isomer #3CC(C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=C(O)CC1(C)C5182.4Semi standard non polar33892256
Phoenicoxanthin,2TBDMS,isomer #3CC(C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=C(O)CC1(C)C4833.9Standard non polar33892256
Phoenicoxanthin,2TBDMS,isomer #3CC(C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=CCC1(C)C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C(O[Si](C)(C)C(C)(C)C)=C(O)CC1(C)C4848.3Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Phoenicoxanthin GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Phoenicoxanthin GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Phoenicoxanthin GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Phoenicoxanthin GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Phoenicoxanthin GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Phoenicoxanthin GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phoenicoxanthin 10V, Positive-QTOFsplash10-0560-0373490000-b01d0a8a6ef7312b95622021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phoenicoxanthin 20V, Positive-QTOFsplash10-03dj-0595330000-e3e77cd42813c18120ef2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phoenicoxanthin 40V, Positive-QTOFsplash10-0aou-0146900000-38d6776de73ab1a5d60f2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phoenicoxanthin 10V, Negative-QTOFsplash10-004i-0002090000-623baaeb35e4740615d22021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phoenicoxanthin 20V, Negative-QTOFsplash10-004i-0126190000-5657898f45e6367f13352021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phoenicoxanthin 40V, Negative-QTOFsplash10-0gvk-0439240000-59179642a866de66ff832021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound25203867
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]