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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 03:42:05 UTC
Update Date2021-09-26 22:59:55 UTC
HMDB IDHMDB0249201
Secondary Accession NumbersNone
Metabolite Identification
Common NameBig gastrin
Description4-{[2-({2-[(2-{[2-({2-[({1-[2-({2-[(6-amino-2-{[6-amino-2-({2-[(2-{[3-carboxy-1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[hydroxy(1-{2-[(1-hydroxy-2-{[1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[hydroxy(5-hydroxy-3,4-dihydro-2H-pyrrol-2-yl)methylidene]amino}-4-methylpentylidene)amino]ethylidene}amino)ethylidene]amino}-4-(C-hydroxycarbonimidoyl)butylidene)amino]acetyl}pyrrolidin-2-yl)methylidene]amino}ethylidene)amino]ethylidene}amino)ethylidene]amino}ethylidene)amino]propylidene}amino)propylidene]amino}-1-hydroxyethylidene)amino]-1-hydroxyethylidene}amino)-1-hydroxyhexylidene]amino}-1-hydroxyhexylidene)amino]-1-hydroxy-4-(C-hydroxycarbonimidoyl)butylidene}amino)acetyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxyethylidene}amino)-1-hydroxyethylidene]amino}-4-carboxy-1-hydroxybutylidene)amino]-4-carboxy-1-hydroxybutylidene}amino)-4-carboxy-1-hydroxybutylidene]amino}-4-[({[1-({[({[1-({1-[(2-carboxy-1-{[1-(C-hydroxycarbonimidoyl)-2-phenylethyl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]-3-(methylsulfanyl)propyl}-C-hydroxycarbonimidoyl)-2-(1H-indol-3-yl)ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]butanoic acid belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues. Based on a literature review very few articles have been published on 4-{[2-({2-[(2-{[2-({2-[({1-[2-({2-[(6-amino-2-{[6-amino-2-({2-[(2-{[3-carboxy-1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[hydroxy(1-{2-[(1-hydroxy-2-{[1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[hydroxy(5-hydroxy-3,4-dihydro-2H-pyrrol-2-yl)methylidene]amino}-4-methylpentylidene)amino]ethylidene}amino)ethylidene]amino}-4-(C-hydroxycarbonimidoyl)butylidene)amino]acetyl}pyrrolidin-2-yl)methylidene]amino}ethylidene)amino]ethylidene}amino)ethylidene]amino}ethylidene)amino]propylidene}amino)propylidene]amino}-1-hydroxyethylidene)amino]-1-hydroxyethylidene}amino)-1-hydroxyhexylidene]amino}-1-hydroxyhexylidene)amino]-1-hydroxy-4-(C-hydroxycarbonimidoyl)butylidene}amino)acetyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxyethylidene}amino)-1-hydroxyethylidene]amino}-4-carboxy-1-hydroxybutylidene)amino]-4-carboxy-1-hydroxybutylidene}amino)-4-carboxy-1-hydroxybutylidene]amino}-4-[({[1-({[({[1-({1-[(2-carboxy-1-{[1-(C-hydroxycarbonimidoyl)-2-phenylethyl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]-3-(methylsulfanyl)propyl}-C-hydroxycarbonimidoyl)-2-(1H-indol-3-yl)ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]butanoic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). Big gastrin is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Big gastrin is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
4-{[2-({2-[(2-{[2-({2-[({1-[2-({2-[(6-amino-2-{[6-amino-2-({2-[(2-{[3-carboxy-1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[hydroxy(1-{2-[(1-hydroxy-2-{[1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[hydroxy(5-hydroxy-3,4-dihydro-2H-pyrrol-2-yl)methylidene]amino}-4-methylpentylidene)amino]ethylidene}amino)ethylidene]amino}-4-(C-hydroxycarbonimidoyl)butylidene)amino]acetyl}pyrrolidin-2-yl)methylidene]amino}ethylidene)amino]ethylidene}amino)ethylidene]amino}ethylidene)amino]propylidene}amino)propylidene]amino}-1-hydroxyethylidene)amino]-1-hydroxyethylidene}amino)-1-hydroxyhexylidene]amino}-1-hydroxyhexylidene)amino]-1-hydroxy-4-(C-hydroxycarbonimidoyl)butylidene}amino)acetyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxyethylidene}amino)-1-hydroxyethylidene]amino}-4-carboxy-1-hydroxybutylidene)amino]-4-carboxy-1-hydroxybutylidene}amino)-4-carboxy-1-hydroxybutylidene]amino}-4-[({[1-({[({[1-({1-[(2-carboxy-1-{[1-(C-hydroxycarbonimidoyl)-2-phenylethyl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]-3-(methylsulfanyl)propyl}-C-hydroxycarbonimidoyl)-2-(1H-indol-3-yl)ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]butanoateGenerator
4-{[2-({2-[(2-{[2-({2-[({1-[2-({2-[(6-amino-2-{[6-amino-2-({2-[(2-{[3-carboxy-1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[hydroxy(1-{2-[(1-hydroxy-2-{[1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[hydroxy(5-hydroxy-3,4-dihydro-2H-pyrrol-2-yl)methylidene]amino}-4-methylpentylidene)amino]ethylidene}amino)ethylidene]amino}-4-(C-hydroxycarbonimidoyl)butylidene)amino]acetyl}pyrrolidin-2-yl)methylidene]amino}ethylidene)amino]ethylidene}amino)ethylidene]amino}ethylidene)amino]propylidene}amino)propylidene]amino}-1-hydroxyethylidene)amino]-1-hydroxyethylidene}amino)-1-hydroxyhexylidene]amino}-1-hydroxyhexylidene)amino]-1-hydroxy-4-(C-hydroxycarbonimidoyl)butylidene}amino)acetyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxyethylidene}amino)-1-hydroxyethylidene]amino}-4-carboxy-1-hydroxybutylidene)amino]-4-carboxy-1-hydroxybutylidene}amino)-4-carboxy-1-hydroxybutylidene]amino}-4-[({[1-({[({[1-({1-[(2-carboxy-1-{[1-(C-hydroxycarbonimidoyl)-2-phenylethyl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]-3-(methylsulphanyl)propyl}-C-hydroxycarbonimidoyl)-2-(1H-indol-3-yl)ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]butanoateGenerator
4-{[2-({2-[(2-{[2-({2-[({1-[2-({2-[(6-amino-2-{[6-amino-2-({2-[(2-{[3-carboxy-1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[hydroxy(1-{2-[(1-hydroxy-2-{[1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[hydroxy(5-hydroxy-3,4-dihydro-2H-pyrrol-2-yl)methylidene]amino}-4-methylpentylidene)amino]ethylidene}amino)ethylidene]amino}-4-(C-hydroxycarbonimidoyl)butylidene)amino]acetyl}pyrrolidin-2-yl)methylidene]amino}ethylidene)amino]ethylidene}amino)ethylidene]amino}ethylidene)amino]propylidene}amino)propylidene]amino}-1-hydroxyethylidene)amino]-1-hydroxyethylidene}amino)-1-hydroxyhexylidene]amino}-1-hydroxyhexylidene)amino]-1-hydroxy-4-(C-hydroxycarbonimidoyl)butylidene}amino)acetyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxyethylidene}amino)-1-hydroxyethylidene]amino}-4-carboxy-1-hydroxybutylidene)amino]-4-carboxy-1-hydroxybutylidene}amino)-4-carboxy-1-hydroxybutylidene]amino}-4-[({[1-({[({[1-({1-[(2-carboxy-1-{[1-(C-hydroxycarbonimidoyl)-2-phenylethyl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]-3-(methylsulphanyl)propyl}-C-hydroxycarbonimidoyl)-2-(1H-indol-3-yl)ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]butanoic acidGenerator
Big-big gastrinMeSH
Gastrin 34MeSH
Gastrin 52MeSH
Gastrin-71MeSH
Gastrin-52MeSH
Pro-gastrinMeSH
Progastrin (1-80)MeSH
Gastrin 71MeSH
Gastrin-34 humanMeSH
Glycine-extended gastrin 34MeSH
ProgastrinMeSH
Chemical FormulaC132H194N40O49S
Average Molecular Weight3157.3
Monoisotopic Molecular Weight3155.363903961
IUPAC Name4-(2-{2-[2-(2-{2-[(1-{2-[2-(6-amino-2-{6-amino-2-[2-(2-{2-[2-(2-{2-[2-(2-{[1-(2-{4-carbamoyl-2-[2-(2-{4-methyl-2-[(5-oxopyrrolidin-2-yl)formamido]pentanamido}acetamido)acetamido]butanamido}acetyl)pyrrolidin-2-yl]formamido}acetamido)acetamido]acetamido}acetamido)propanamido]-3-carboxypropanamido}acetamido)acetamido]hexanamido}hexanamido)-4-carbamoylbutanamido]acetyl}pyrrolidin-2-yl)formamido]acetamido}acetamido)-4-carboxybutanamido]-4-carboxybutanamido}-4-carboxybutanamido)-4-({[(1-{[({[(1-{[1-({1-[(1-carbamoyl-2-phenylethyl)carbamoyl]-2-carboxyethyl}carbamoyl)-3-(methylsulfanyl)propyl]carbamoyl}-2-(1H-indol-3-yl)ethyl)carbamoyl]methyl}carbamoyl)methyl]carbamoyl}ethyl)carbamoyl]methyl}carbamoyl)butanoic acid
Traditional Namebig gastrin
CAS Registry NumberNot Available
SMILES
CSCCC(NC(=O)C(CC1=CNC2=CC=CC=C12)NC(=O)CNC(=O)CNC(=O)C(C)NC(=O)CNC(=O)C(CCC(O)=O)NC(=O)C(CCC(O)=O)NC(=O)C(CCC(O)=O)NC(=O)C(CCC(O)=O)NC(=O)CNC(=O)CNC(=O)C1CCCN1C(=O)CNC(=O)C(CCC(N)=O)NC(=O)C(CCCCN)NC(=O)C(CCCCN)NC(=O)CNC(=O)CNC(=O)C(CC(O)=O)NC(=O)C(C)NC(=O)CNC(=O)CNC(=O)CNC(=O)CNC(=O)C1CCCN1C(=O)CNC(=O)C(CCC(N)=O)NC(=O)CNC(=O)CNC(=O)C(CC(C)C)NC(=O)C1CCC(=O)N1)C(=O)NC(CC(O)=O)C(=O)NC(CC1=CC=CC=C1)C(N)=O
InChI Identifier
InChI=1S/C132H194N40O49S/c1-66(2)45-84(169-125(214)78-27-34-92(175)156-78)120(209)147-54-96(179)143-60-103(186)158-75(25-32-90(135)173)117(206)152-64-106(189)171-42-15-23-88(171)131(220)150-56-98(181)140-51-93(176)139-52-94(177)141-58-100(183)155-68(4)116(205)168-86(48-112(199)200)121(210)148-55-97(180)142-59-102(185)157-73(21-11-13-40-133)122(211)161-74(22-12-14-41-134)123(212)162-76(26-33-91(136)174)119(208)153-65-107(190)172-43-16-24-89(172)132(221)151-57-99(182)144-61-104(187)159-79(29-36-109(193)194)124(213)164-81(31-38-111(197)198)127(216)165-80(30-37-110(195)196)126(215)163-77(28-35-108(191)192)118(207)149-63-101(184)154-67(3)115(204)146-53-95(178)145-62-105(188)160-85(47-70-50-138-72-20-10-9-19-71(70)72)129(218)166-82(39-44-222-5)128(217)170-87(49-113(201)202)130(219)167-83(114(137)203)46-69-17-7-6-8-18-69/h6-10,17-20,50,66-68,73-89,138H,11-16,21-49,51-65,133-134H2,1-5H3,(H2,135,173)(H2,136,174)(H2,137,203)(H,139,176)(H,140,181)(H,141,177)(H,142,180)(H,143,179)(H,144,182)(H,145,178)(H,146,204)(H,147,209)(H,148,210)(H,149,207)(H,150,220)(H,151,221)(H,152,206)(H,153,208)(H,154,184)(H,155,183)(H,156,175)(H,157,185)(H,158,186)(H,159,187)(H,160,188)(H,161,211)(H,162,212)(H,163,215)(H,164,213)(H,165,216)(H,166,218)(H,167,219)(H,168,205)(H,169,214)(H,170,217)(H,191,192)(H,193,194)(H,195,196)(H,197,198)(H,199,200)(H,201,202)
InChI KeyRZIMNEGTIDYAGZ-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues.
KingdomOrganic compounds
Super ClassOrganic Polymers
ClassPolypeptides
Sub ClassNot Available
Direct ParentPolypeptides
Alternative Parents
Substituents
  • Polypeptide
  • Alpha peptide
  • Hexacarboxylic acid or derivatives
  • Phenylalanine or derivatives
  • Glutamine or derivatives
  • Glutamic acid or derivatives
  • Methionine or derivatives
  • Leucine or derivatives
  • Aspartic acid or derivatives
  • N-acyl-alpha amino acid or derivatives
  • Proline or derivatives
  • Alpha-amino acid amide
  • Triptan
  • Alanine or derivatives
  • Amphetamine or derivatives
  • N-substituted-alpha-amino acid
  • Alpha-amino acid or derivatives
  • 3-alkylindole
  • Indole
  • Indole or derivatives
  • N-acylpyrrolidine
  • Pyrrolidine-2-carboxamide
  • Pyrrolidine carboxylic acid or derivatives
  • Fatty amide
  • Fatty acyl
  • Monocyclic benzene moiety
  • Pyrrolidone
  • Substituted pyrrole
  • 2-pyrrolidone
  • Benzenoid
  • N-acyl-amine
  • Heteroaromatic compound
  • Tertiary carboxylic acid amide
  • Pyrrole
  • Pyrrolidine
  • Secondary carboxylic acid amide
  • Primary carboxylic acid amide
  • Amino acid or derivatives
  • Amino acid
  • Carboxamide group
  • Lactam
  • Thioether
  • Sulfenyl compound
  • Dialkylthioether
  • Carboxylic acid derivative
  • Organoheterocyclic compound
  • Azacycle
  • Carboxylic acid
  • Amine
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Primary aliphatic amine
  • Organonitrogen compound
  • Carbonyl group
  • Organooxygen compound
  • Organic oxide
  • Organosulfur compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Primary amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-0.77ALOGPS
logP-32ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)2.85ChemAxon
pKa (Strongest Basic)10.51ChemAxon
Physiological Charge-4ChemAxon
Hydrogen Acceptor Count51ChemAxon
Hydrogen Donor Count44ChemAxon
Polar Surface Area1392.72 ŲChemAxon
Rotatable Bond Count104ChemAxon
Refractivity754.86 m³·mol⁻¹ChemAxon
Polarizability315.94 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Big gastrin 10V, Positive-QTOFsplash10-000i-1910002121-cd788d51024c0592e96a2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Big gastrin 20V, Positive-QTOFsplash10-01pa-2900000120-ba266f8c21cd9d9ea0b82021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Big gastrin 40V, Positive-QTOFsplash10-03xr-3900310210-3a3acfd0ff5a9913efbb2021-10-12Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound71308162
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]