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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 03:44:26 UTC
Update Date2021-09-26 22:59:58 UTC
HMDB IDHMDB0249236
Secondary Accession NumbersNone
Metabolite Identification
Common NameBis-(1,3-diethylthiobarbituric acid)trimethine oxonol
Description5-[3-(1,3-diethyl-4,6-dioxo-2-sulfanylidene-1,3-diazinan-5-ylidene)prop-1-en-1-yl]-1,3-diethyl-2-sulfanylidene-1,3-diazinane-4,6-dione belongs to the class of organic compounds known as thiobarbituric acid derivatives. These are organic compounds containing a 2-thioxodihydropyrimidine-4,6(1H,5H)-dione skeleton. Based on a literature review very few articles have been published on 5-[3-(1,3-diethyl-4,6-dioxo-2-sulfanylidene-1,3-diazinan-5-ylidene)prop-1-en-1-yl]-1,3-diethyl-2-sulfanylidene-1,3-diazinane-4,6-dione. This compound has been identified in human blood as reported by (PMID: 31557052 ). Bis-(1,3-diethylthiobarbituric acid)trimethine oxonol is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Bis-(1,3-diethylthiobarbituric acid)trimethine oxonol is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
5-[3-(1,3-Diethyl-4,6-dioxo-2-sulphanylidene-1,3-diazinan-5-ylidene)prop-1-en-1-yl]-1,3-diethyl-2-sulphanylidene-1,3-diazinane-4,6-dioneGenerator
Bis-(1,3-diethylthiobarbitate)trimethine oxonolGenerator
Bis-(1,3-diethylthiobarbitic acid)trimethine oxonolGenerator
DiSBAC2MeSH
Bis-(1,3-diethylthiobarbiturate) trimethine oxonolMeSH
Bis-oxonolMeSH
Chemical FormulaC19H24N4O4S2
Average Molecular Weight436.55
Monoisotopic Molecular Weight436.123897617
IUPAC Name5-[3-(1,3-diethyl-4,6-dioxo-2-sulfanylidene-1,3-diazinan-5-ylidene)prop-1-en-1-yl]-1,3-diethyl-2-sulfanylidene-1,3-diazinane-4,6-dione
Traditional Name5-[3-(1,3-diethyl-4,6-dioxo-2-sulfanylidene-1,3-diazinan-5-ylidene)prop-1-en-1-yl]-1,3-diethyl-2-sulfanylidene-1,3-diazinane-4,6-dione
CAS Registry NumberNot Available
SMILES
CCN1C(=O)C(C=CC=C2C(=O)N(CC)C(=S)N(CC)C2=O)C(=O)N(CC)C1=S
InChI Identifier
InChI=1S/C19H24N4O4S2/c1-5-20-14(24)12(15(25)21(6-2)18(20)28)10-9-11-13-16(26)22(7-3)19(29)23(8-4)17(13)27/h9-12H,5-8H2,1-4H3
InChI KeyVJYNRXFXHKIGLT-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as thiobarbituric acid derivatives. These are organic compounds containing a 2-thioxodihydropyrimidine-4,6(1H,5H)-dione skeleton.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDiazines
Sub ClassPyrimidines and pyrimidine derivatives
Direct ParentThiobarbituric acid derivatives
Alternative Parents
Substituents
  • Thiobarbiturate
  • 1,3-dicarbonyl compound
  • 1,3-diazinane
  • Thiourea
  • Azacycle
  • Carboxylic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organosulfur compound
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.11ALOGPS
logP2.11ChemAxon
logS-4.5ALOGPS
pKa (Strongest Acidic)5.1ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area81.24 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity120.45 m³·mol⁻¹ChemAxon
Polarizability44.28 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+188.430932474
DeepCCS[M-H]-186.04230932474
DeepCCS[M-2H]-220.29130932474
DeepCCS[M+Na]+195.32630932474
AllCCS[M+H]+198.932859911
AllCCS[M+H-H2O]+196.632859911
AllCCS[M+NH4]+201.132859911
AllCCS[M+Na]+201.732859911
AllCCS[M-H]-200.232859911
AllCCS[M+Na-2H]-201.032859911
AllCCS[M+HCOO]-202.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Bis-(1,3-diethylthiobarbituric acid)trimethine oxonolCCN1C(=O)C(C=CC=C2C(=O)N(CC)C(=S)N(CC)C2=O)C(=O)N(CC)C1=S5654.2Standard polar33892256
Bis-(1,3-diethylthiobarbituric acid)trimethine oxonolCCN1C(=O)C(C=CC=C2C(=O)N(CC)C(=S)N(CC)C2=O)C(=O)N(CC)C1=S2895.5Standard non polar33892256
Bis-(1,3-diethylthiobarbituric acid)trimethine oxonolCCN1C(=O)C(C=CC=C2C(=O)N(CC)C(=S)N(CC)C2=O)C(=O)N(CC)C1=S3771.9Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Bis-(1,3-diethylthiobarbituric acid)trimethine oxonol GC-MS (Non-derivatized) - 70eV, Positivesplash10-004i-9175500000-9678bfa97b4ee6abd8ea2021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Bis-(1,3-diethylthiobarbituric acid)trimethine oxonol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bis-(1,3-diethylthiobarbituric acid)trimethine oxonol 10V, Positive-QTOFsplash10-000i-0000900000-081c190685ad57bd54232021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bis-(1,3-diethylthiobarbituric acid)trimethine oxonol 20V, Positive-QTOFsplash10-0abi-0017900000-e2d67c07de9b4263494d2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bis-(1,3-diethylthiobarbituric acid)trimethine oxonol 40V, Positive-QTOFsplash10-00di-1009000000-d0a0d155456c992f79642021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bis-(1,3-diethylthiobarbituric acid)trimethine oxonol 10V, Negative-QTOFsplash10-000i-0000900000-311e2322c0536138840f2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bis-(1,3-diethylthiobarbituric acid)trimethine oxonol 20V, Negative-QTOFsplash10-000i-1002900000-7f13188cc6638f6929a22021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bis-(1,3-diethylthiobarbituric acid)trimethine oxonol 40V, Negative-QTOFsplash10-057i-0579300000-dd6e9e10e126f65132742021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID84185
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound93248
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]