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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 07:00:01 UTC
Update Date2021-09-26 23:01:13 UTC
HMDB IDHMDB0250028
Secondary Accession NumbersNone
Metabolite Identification
Common Name9-(trans-4-Hydroxy-2-buten-1-yl)adenine
Description4-(6-amino-9H-purin-9-yl)but-2-en-1-ol belongs to the class of organic compounds known as 6-aminopurines. These are purines that carry an amino group at position 6. Purine is a bicyclic aromatic compound made up of a pyrimidine ring fused to an imidazole ring. Based on a literature review very few articles have been published on 4-(6-amino-9H-purin-9-yl)but-2-en-1-ol. This compound has been identified in human blood as reported by (PMID: 31557052 ). 9-(trans-4-hydroxy-2-buten-1-yl)adenine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 9-(trans-4-Hydroxy-2-buten-1-yl)adenine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
9-(4-Hydroxy-2-buten-1-yl)adenineMeSH
Chemical FormulaC9H11N5O
Average Molecular Weight205.221
Monoisotopic Molecular Weight205.096359994
IUPAC Name4-(6-amino-9H-purin-9-yl)but-2-en-1-ol
Traditional Name4-(6-aminopurin-9-yl)but-2-en-1-ol
CAS Registry NumberNot Available
SMILES
NC1=NC=NC2=C1N=CN2CC=CCO
InChI Identifier
InChI=1S/C9H11N5O/c10-8-7-9(12-5-11-8)14(6-13-7)3-1-2-4-15/h1-2,5-6,15H,3-4H2,(H2,10,11,12)
InChI KeyDYLIWHYUXAJDOJ-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 6-aminopurines. These are purines that carry an amino group at position 6. Purine is a bicyclic aromatic compound made up of a pyrimidine ring fused to an imidazole ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassImidazopyrimidines
Sub ClassPurines and purine derivatives
Direct Parent6-aminopurines
Alternative Parents
Substituents
  • 6-aminopurine
  • Aminopyrimidine
  • Imidolactam
  • Pyrimidine
  • N-substituted imidazole
  • Heteroaromatic compound
  • Imidazole
  • Azole
  • Azacycle
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Primary amine
  • Primary alcohol
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP0.11ALOGPS
logP-0.47ChemAxon
logS-1.8ALOGPS
pKa (Strongest Acidic)15.64ChemAxon
pKa (Strongest Basic)4.12ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area89.85 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity58.11 m³·mol⁻¹ChemAxon
Polarizability20.56 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+138.01930932474
DeepCCS[M-H]-135.62330932474
DeepCCS[M-2H]-170.77330932474
DeepCCS[M+Na]+145.23230932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
9-(trans-4-Hydroxy-2-buten-1-yl)adenineNC1=NC=NC2=C1N=CN2CC=CCO2956.6Standard polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenineNC1=NC=NC2=C1N=CN2CC=CCO2140.1Standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenineNC1=NC=NC2=C1N=CN2CC=CCO2176.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TMS,isomer #1C[Si](C)(C)NC1=NC=NC2=C1N=CN2CC=CCO[Si](C)(C)C2315.9Semi standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TMS,isomer #1C[Si](C)(C)NC1=NC=NC2=C1N=CN2CC=CCO[Si](C)(C)C2296.2Standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TMS,isomer #1C[Si](C)(C)NC1=NC=NC2=C1N=CN2CC=CCO[Si](C)(C)C3341.7Standard polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TMS,isomer #2C[Si](C)(C)N(C1=NC=NC2=C1N=CN2CC=CCO)[Si](C)(C)C2307.4Semi standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TMS,isomer #2C[Si](C)(C)N(C1=NC=NC2=C1N=CN2CC=CCO)[Si](C)(C)C2438.3Standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TMS,isomer #2C[Si](C)(C)N(C1=NC=NC2=C1N=CN2CC=CCO)[Si](C)(C)C3275.9Standard polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,3TMS,isomer #1C[Si](C)(C)OCC=CCN1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C212291.2Semi standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,3TMS,isomer #1C[Si](C)(C)OCC=CCN1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C212412.7Standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,3TMS,isomer #1C[Si](C)(C)OCC=CCN1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C212847.0Standard polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=NC=NC2=C1N=CN2CC=CCO[Si](C)(C)C(C)(C)C2693.9Semi standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=NC=NC2=C1N=CN2CC=CCO[Si](C)(C)C(C)(C)C2749.0Standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC1=NC=NC2=C1N=CN2CC=CCO[Si](C)(C)C(C)(C)C3389.3Standard polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)N(C1=NC=NC2=C1N=CN2CC=CCO)[Si](C)(C)C(C)(C)C2681.4Semi standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)N(C1=NC=NC2=C1N=CN2CC=CCO)[Si](C)(C)C(C)(C)C2866.7Standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)N(C1=NC=NC2=C1N=CN2CC=CCO)[Si](C)(C)C(C)(C)C3266.2Standard polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC=CCN1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C212838.1Semi standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC=CCN1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213081.9Standard non polar33892256
9-(trans-4-Hydroxy-2-buten-1-yl)adenine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC=CCN1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213011.4Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine GC-MS (Non-derivatized) - 70eV, Positivesplash10-004r-2900000000-9e3a08670ff81beee2cf2021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine 10V, Positive-QTOFsplash10-0a4i-0190000000-76e6d94250a3f2dc2fb92021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine 20V, Positive-QTOFsplash10-000i-0920000000-8a03a9db104527537ccb2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine 40V, Positive-QTOFsplash10-066r-2900000000-2b9aded8ce4d1c537f682021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine 10V, Negative-QTOFsplash10-001i-0900000000-fa92c7f20c19d2f6e5352021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine 20V, Negative-QTOFsplash10-001i-0900000000-7db6090c0238a3d409642021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(trans-4-Hydroxy-2-buten-1-yl)adenine 40V, Negative-QTOFsplash10-053r-2900000000-fddaf6a03e08abd6eb2c2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID23349075
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound128656
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]