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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 07:22:44 UTC

Update Date

2021-09-26 23:01:49 UTC

HMDB ID

HMDB0250375

Secondary Accession Numbers

None

Metabolite Identification

Common Name

N(epsilon)-(Carboxymethyl)hydroxylysine

Description

N(epsilon)-(Carboxymethyl)hydroxylysine belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon). Based on a literature review a significant number of articles have been published on N(epsilon)-(Carboxymethyl)hydroxylysine. This compound has been identified in human blood as reported by (PMID: 31557052 ). N(epsilon)-(carboxymethyl)hydroxylysine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically N(epsilon)-(Carboxymethyl)hydroxylysine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0250375
     RDKit          3D
N(epsilon)-(Carboxymethyl)hydroxylysine
 31 30  0  0  0  0  0  0  0  0999 V2000
    3.7410   -0.4743    0.9931 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4959   -0.2193   -0.3902 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1006    0.3328   -0.6000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0417   -0.6619   -0.1045 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2960   -0.0088   -0.3628 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2944    1.1970    0.3754 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4484   -0.8241    0.1672 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6491   -0.0413   -0.0536 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8369   -0.6830    0.3985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0043    0.1881    0.1318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8194    1.3006   -0.4179 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3063   -0.1659    0.4619 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4605    0.7492   -0.9120 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3410    1.2230   -0.1473 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4747    1.1957   -2.2279 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0605    0.0890    1.5561 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6643   -1.5053    1.2194 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5803   -1.1431   -1.0322 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9599    1.2989   -0.0983 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9743    0.4758   -1.6944 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0677   -1.5865   -0.7120 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2181   -0.9217    0.9384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4137    0.1519   -1.4315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4901    1.9255   -0.2427 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5583   -1.7554   -0.4370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3188   -1.1124    1.2218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5565    0.8674    0.4599 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8092   -0.9636    1.4704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0214   -1.6380   -0.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8421    0.5372    0.9778 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4840    2.1725   -2.4926 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
  2 13  1  0
 13 14  2  0
 13 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  3 19  1  0
  3 20  1  0
  4 21  1  0
  4 22  1  0
  5 23  1  0
  6 24  1  0
  7 25  1  0
  7 26  1  0
  8 27  1  0
  9 28  1  0
  9 29  1  0
 12 30  1  0
 15 31  1  0
M  END

  Mrv1652309112109232D          

 15 14  0  0  0  0            999 V2000
    7.0934    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    4.0954    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  3  7  1  0  0  0  0
  1  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
  8 15  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0250375

> <DATABASE_NAME>
hmdb

> <SMILES>
NC(CCC(O)CNCC(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C8H16N2O5/c9-6(8(14)15)2-1-5(11)3-10-4-7(12)13/h5-6,10-11H,1-4,9H2,(H,12,13)(H,14,15)

> <INCHI_KEY>
YKQYHBPXDAVALT-UHFFFAOYSA-N

> <FORMULA>
C8H16N2O5

> <MOLECULAR_WEIGHT>
220.225

> <EXACT_MASS>
220.105921623

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
21.506598693036793

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-amino-6-[(carboxymethyl)amino]-5-hydroxyhexanoic acid

> <ALOGPS_LOGP>
-3.60

> <JCHEM_LOGP>
-6.608494809875519

> <ALOGPS_LOGS>
-0.93

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
2.3331910016782738

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.455577918786867

> <JCHEM_PKA_STRONGEST_BASIC>
10.04937649552272

> <JCHEM_POLAR_SURFACE_AREA>
132.88

> <JCHEM_REFRACTIVITY>
50.0302

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.61e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-amino-6-[(carboxymethyl)amino]-5-hydroxyhexanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0250375
     RDKit          3D
N(epsilon)-(Carboxymethyl)hydroxylysine
 31 30  0  0  0  0  0  0  0  0999 V2000
    3.7410   -0.4743    0.9931 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4959   -0.2193   -0.3902 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1006    0.3328   -0.6000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0417   -0.6619   -0.1045 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2960   -0.0088   -0.3628 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2944    1.1970    0.3754 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4484   -0.8241    0.1672 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6491   -0.0413   -0.0536 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8369   -0.6830    0.3985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0043    0.1881    0.1318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8194    1.3006   -0.4179 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3063   -0.1659    0.4619 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4605    0.7492   -0.9120 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3410    1.2230   -0.1473 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4747    1.1957   -2.2279 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0605    0.0890    1.5561 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6643   -1.5053    1.2194 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5803   -1.1431   -1.0322 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9599    1.2989   -0.0983 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9743    0.4758   -1.6944 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0677   -1.5865   -0.7120 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2181   -0.9217    0.9384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4137    0.1519   -1.4315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4901    1.9255   -0.2427 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5583   -1.7554   -0.4370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3188   -1.1124    1.2218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5565    0.8674    0.4599 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8092   -0.9636    1.4704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0214   -1.6380   -0.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8421    0.5372    0.9778 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4840    2.1725   -2.4926 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
  2 13  1  0
 13 14  2  0
 13 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  3 19  1  0
  3 20  1  0
  4 21  1  0
  4 22  1  0
  5 23  1  0
  6 24  1  0
  7 25  1  0
  7 26  1  0
  8 27  1  0
  9 28  1  0
  9 29  1  0
 12 30  1  0
 15 31  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      13.241   6.105   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.907   5.335   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.574   6.105   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.240   5.335   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       7.906   6.105   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0       9.240   3.795   0.000  0.00  0.00           O+0
HETATM    7  N   UNK     0      10.574   7.645   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0      14.575   5.335   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      15.908   6.105   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      17.242   5.335   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0      18.576   6.105   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      19.909   5.335   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      21.243   6.105   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      19.909   3.795   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      14.575   3.795   0.000  0.00  0.00           O+0
CONECT    1    2    8                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    7                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4                                                            
CONECT    7    3                                                            
CONECT    8    1    9   15                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15    8                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   28    0
END

COMPND    HMDB0250375
HETATM    1  N1  UNL     1       3.741  -0.474   0.993  1.00  0.00           N  
HETATM    2  C1  UNL     1       3.496  -0.219  -0.390  1.00  0.00           C  
HETATM    3  C2  UNL     1       2.101   0.333  -0.600  1.00  0.00           C  
HETATM    4  C3  UNL     1       1.042  -0.662  -0.105  1.00  0.00           C  
HETATM    5  C4  UNL     1      -0.296  -0.009  -0.363  1.00  0.00           C  
HETATM    6  O1  UNL     1      -0.294   1.197   0.375  1.00  0.00           O  
HETATM    7  C5  UNL     1      -1.448  -0.824   0.167  1.00  0.00           C  
HETATM    8  N2  UNL     1      -2.649  -0.041  -0.054  1.00  0.00           N  
HETATM    9  C6  UNL     1      -3.837  -0.683   0.398  1.00  0.00           C  
HETATM   10  C7  UNL     1      -5.004   0.188   0.132  1.00  0.00           C  
HETATM   11  O2  UNL     1      -4.819   1.301  -0.418  1.00  0.00           O  
HETATM   12  O3  UNL     1      -6.306  -0.166   0.462  1.00  0.00           O  
HETATM   13  C8  UNL     1       4.461   0.749  -0.912  1.00  0.00           C  
HETATM   14  O4  UNL     1       5.341   1.223  -0.147  1.00  0.00           O  
HETATM   15  O5  UNL     1       4.475   1.196  -2.228  1.00  0.00           O  
HETATM   16  H1  UNL     1       3.061   0.089   1.556  1.00  0.00           H  
HETATM   17  H2  UNL     1       3.664  -1.505   1.219  1.00  0.00           H  
HETATM   18  H3  UNL     1       3.580  -1.143  -1.032  1.00  0.00           H  
HETATM   19  H4  UNL     1       1.960   1.299  -0.098  1.00  0.00           H  
HETATM   20  H5  UNL     1       1.974   0.476  -1.694  1.00  0.00           H  
HETATM   21  H6  UNL     1       1.068  -1.586  -0.712  1.00  0.00           H  
HETATM   22  H7  UNL     1       1.218  -0.922   0.938  1.00  0.00           H  
HETATM   23  H8  UNL     1      -0.414   0.152  -1.432  1.00  0.00           H  
HETATM   24  H9  UNL     1      -0.490   1.926  -0.243  1.00  0.00           H  
HETATM   25  H10 UNL     1      -1.558  -1.755  -0.437  1.00  0.00           H  
HETATM   26  H11 UNL     1      -1.319  -1.112   1.222  1.00  0.00           H  
HETATM   27  H12 UNL     1      -2.556   0.867   0.460  1.00  0.00           H  
HETATM   28  H13 UNL     1      -3.809  -0.964   1.470  1.00  0.00           H  
HETATM   29  H14 UNL     1      -4.021  -1.638  -0.169  1.00  0.00           H  
HETATM   30  H15 UNL     1      -6.842   0.537   0.978  1.00  0.00           H  
HETATM   31  H16 UNL     1       4.484   2.172  -2.493  1.00  0.00           H  
CONECT    1    2   16   17
CONECT    2    3   13   18
CONECT    3    4   19   20
CONECT    4    5   21   22
CONECT    5    6    7   23
CONECT    6   24
CONECT    7    8   25   26
CONECT    8    9   27
CONECT    9   10   28   29
CONECT   10   11   11   12
CONECT   12   30
CONECT   13   14   14   15
CONECT   15   31
END

HMDB0250375
     RDKit          3D
N(epsilon)-(Carboxymethyl)hydroxylysine
 31 30  0  0  0  0  0  0  0  0999 V2000
    3.7410   -0.4743    0.9931 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4959   -0.2193   -0.3902 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1006    0.3328   -0.6000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0417   -0.6619   -0.1045 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2960   -0.0088   -0.3628 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2944    1.1970    0.3754 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4484   -0.8241    0.1672 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6491   -0.0413   -0.0536 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8369   -0.6830    0.3985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0043    0.1881    0.1318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8194    1.3006   -0.4179 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3063   -0.1659    0.4619 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4605    0.7492   -0.9120 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3410    1.2230   -0.1473 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4747    1.1957   -2.2279 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0605    0.0890    1.5561 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6643   -1.5053    1.2194 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5803   -1.1431   -1.0322 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9599    1.2989   -0.0983 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9743    0.4758   -1.6944 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0677   -1.5865   -0.7120 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2181   -0.9217    0.9384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4137    0.1519   -1.4315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4901    1.9255   -0.2427 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5583   -1.7554   -0.4370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3188   -1.1124    1.2218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5565    0.8674    0.4599 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8092   -0.9636    1.4704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0214   -1.6380   -0.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8421    0.5372    0.9778 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4840    2.1725   -2.4926 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
  2 13  1  0
 13 14  2  0
 13 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  3 19  1  0
  3 20  1  0
  4 21  1  0
  4 22  1  0
  5 23  1  0
  6 24  1  0
  7 25  1  0
  7 26  1  0
  8 27  1  0
  9 28  1  0
  9 29  1  0
 12 30  1  0
 15 31  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
2-Amino-6-[(carboxymethyl)amino]-5-hydroxyhexanoate	HMDB

Chemical Formula

C₈H₁₆N₂O₅

Average Molecular Weight

220.225

Monoisotopic Molecular Weight

220.105921623

IUPAC Name

2-amino-6-[(carboxymethyl)amino]-5-hydroxyhexanoic acid

Traditional Name

2-amino-6-[(carboxymethyl)amino]-5-hydroxyhexanoic acid

CAS Registry Number

Not Available

SMILES

NC(CCC(O)CNCC(O)=O)C(O)=O

InChI Identifier

InChI=1S/C8H16N2O5/c9-6(8(14)15)2-1-5(11)3-10-4-7(12)13/h5-6,10-11H,1-4,9H2,(H,12,13)(H,14,15)

InChI Key

YKQYHBPXDAVALT-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon).

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Alpha amino acids

Alternative Parents

Substituents

Alpha-amino acid
Medium-chain fatty acid
Amino fatty acid
Hydroxy fatty acid
Fatty acyl
Fatty acid
Dicarboxylic acid or derivatives
1,2-aminoalcohol
Amino acid
Secondary alcohol
Carboxylic acid
Secondary amine
Secondary aliphatic amine
Organic nitrogen compound
Primary aliphatic amine
Organonitrogen compound
Organooxygen compound
Primary amine
Hydrocarbon derivative
Carbonyl group
Organic oxide
Amine
Organic oxygen compound
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	-3.6	ALOGPS
logP	-6.6	ChemAxon
logS	-0.93	ALOGPS
pKa (Strongest Acidic)	1.46	ChemAxon
pKa (Strongest Basic)	10.05	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	132.88 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	50.03 m³·mol⁻¹	ChemAxon
Polarizability	21.51 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	143.352	30932474
DeepCCS	[M-H]-	139.524	30932474
DeepCCS	[M-2H]-	176.958	30932474
DeepCCS	[M+Na]+	152.622	30932474
AllCCS	[M+H]+	147.5	32859911
AllCCS	[M+H-H2O]+	144.0	32859911
AllCCS	[M+NH4]+	150.7	32859911
AllCCS	[M+Na]+	151.6	32859911
AllCCS	[M-H]-	146.9	32859911
AllCCS	[M+Na-2H]-	147.7	32859911
AllCCS	[M+HCOO]-	148.6	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
N(epsilon)-(Carboxymethyl)hydroxylysine	NC(CCC(O)CNCC(O)=O)C(O)=O	2921.5	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine	NC(CCC(O)CNCC(O)=O)C(O)=O	1826.6	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine	NC(CCC(O)CNCC(O)=O)C(O)=O	2238.1	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #1	C[Si](C)(C)NC(CCC(CNCC(=O)O[Si](C)(C)C)O[Si](C)(C)C)C(=O)O[Si](C)(C)C	2147.3	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #1	C[Si](C)(C)NC(CCC(CNCC(=O)O[Si](C)(C)C)O[Si](C)(C)C)C(=O)O[Si](C)(C)C	2227.6	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #1	C[Si](C)(C)NC(CCC(CNCC(=O)O[Si](C)(C)C)O[Si](C)(C)C)C(=O)O[Si](C)(C)C	2433.5	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #10	C[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C	2401.0	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #10	C[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C	2324.9	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #10	C[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C	2765.0	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #11	C[Si](C)(C)OC(=O)C(CCC(O)CN(CC(=O)O)[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2411.4	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #11	C[Si](C)(C)OC(=O)C(CCC(O)CN(CC(=O)O)[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2298.8	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #11	C[Si](C)(C)OC(=O)C(CCC(O)CN(CC(=O)O)[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2719.3	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #2	C[Si](C)(C)OC(=O)CN(CC(CCC(N)C(=O)O[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C	2188.2	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #2	C[Si](C)(C)OC(=O)CN(CC(CCC(N)C(=O)O[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C	2223.8	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #2	C[Si](C)(C)OC(=O)CN(CC(CCC(N)C(=O)O[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C	2943.3	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #3	C[Si](C)(C)OC(=O)C(CCC(CNCC(=O)O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2349.5	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #3	C[Si](C)(C)OC(=O)C(CCC(CNCC(=O)O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2247.5	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #3	C[Si](C)(C)OC(=O)C(CCC(CNCC(=O)O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2624.9	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #4	C[Si](C)(C)NC(CCC(CN(CC(=O)O)[Si](C)(C)C)O[Si](C)(C)C)C(=O)O[Si](C)(C)C	2247.3	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #4	C[Si](C)(C)NC(CCC(CN(CC(=O)O)[Si](C)(C)C)O[Si](C)(C)C)C(=O)O[Si](C)(C)C	2248.1	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #4	C[Si](C)(C)NC(CCC(CN(CC(=O)O)[Si](C)(C)C)O[Si](C)(C)C)C(=O)O[Si](C)(C)C	2586.3	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #5	C[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C	2348.8	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #5	C[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C	2307.4	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #5	C[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C	2635.6	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #6	C[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)C(=O)O	2262.2	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #6	C[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)C(=O)O	2254.4	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #6	C[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)C(=O)O	2678.5	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #7	C[Si](C)(C)OC(CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)CN(CC(=O)O)[Si](C)(C)C	2457.1	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #7	C[Si](C)(C)OC(CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)CN(CC(=O)O)[Si](C)(C)C	2323.6	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #7	C[Si](C)(C)OC(CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)CN(CC(=O)O)[Si](C)(C)C	2758.4	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #8	C[Si](C)(C)OC(=O)CNCC(O)CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2337.1	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #8	C[Si](C)(C)OC(=O)CNCC(O)CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2279.5	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #8	C[Si](C)(C)OC(=O)CNCC(O)CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2627.1	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #9	C[Si](C)(C)NC(CCC(O)CN(CC(=O)O[Si](C)(C)C)[Si](C)(C)C)C(=O)O[Si](C)(C)C	2210.1	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #9	C[Si](C)(C)NC(CCC(O)CN(CC(=O)O[Si](C)(C)C)[Si](C)(C)C)C(=O)O[Si](C)(C)C	2251.5	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TMS,isomer #9	C[Si](C)(C)NC(CCC(O)CN(CC(=O)O[Si](C)(C)C)[Si](C)(C)C)C(=O)O[Si](C)(C)C	2600.9	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #1	C[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C	2316.1	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #1	C[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C	2318.2	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #1	C[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C	2355.0	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #2	C[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)C(=O)O[Si](C)(C)C	2219.8	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #2	C[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)C(=O)O[Si](C)(C)C	2294.0	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #2	C[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)C(=O)O[Si](C)(C)C	2367.1	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #3	C[Si](C)(C)OC(=O)C(CCC(CN(CC(=O)O)[Si](C)(C)C)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2450.6	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #3	C[Si](C)(C)OC(=O)C(CCC(CN(CC(=O)O)[Si](C)(C)C)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2346.6	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #3	C[Si](C)(C)OC(=O)C(CCC(CN(CC(=O)O)[Si](C)(C)C)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2490.7	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #4	C[Si](C)(C)OC(=O)CN(CC(CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C	2448.2	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #4	C[Si](C)(C)OC(=O)CN(CC(CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C	2363.6	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #4	C[Si](C)(C)OC(=O)CN(CC(CCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C	2533.8	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #5	C[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C	2410.5	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #5	C[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C	2353.9	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TMS,isomer #5	C[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C	2506.4	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,6TMS,isomer #1	C[Si](C)(C)OC(=O)CN(CC(CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C	2456.4	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,6TMS,isomer #1	C[Si](C)(C)OC(=O)CN(CC(CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C	2392.9	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,6TMS,isomer #1	C[Si](C)(C)OC(=O)CN(CC(CCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)O[Si](C)(C)C)[Si](C)(C)C	2341.4	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC(CCC(CNCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	3027.2	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC(CCC(CNCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	2937.2	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC(CCC(CNCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	2839.1	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #10	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3292.2	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #10	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2998.8	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #10	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3022.2	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #11	CC(C)(C)[Si](C)(C)OC(=O)C(CCC(O)CN(CC(=O)O)[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3283.2	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #11	CC(C)(C)[Si](C)(C)OC(=O)C(CCC(O)CN(CC(=O)O)[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2981.7	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #11	CC(C)(C)[Si](C)(C)OC(=O)C(CCC(O)CN(CC(=O)O)[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2999.8	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #2	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(CCC(N)C(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3079.3	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #2	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(CCC(N)C(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2962.3	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #2	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(CCC(N)C(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3122.6	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #3	CC(C)(C)[Si](C)(C)OC(=O)C(CCC(CNCC(=O)O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3234.2	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #3	CC(C)(C)[Si](C)(C)OC(=O)C(CCC(CNCC(=O)O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2956.9	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #3	CC(C)(C)[Si](C)(C)OC(=O)C(CCC(CNCC(=O)O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2913.0	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #4	CC(C)(C)[Si](C)(C)NC(CCC(CN(CC(=O)O)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	3147.5	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #4	CC(C)(C)[Si](C)(C)NC(CCC(CN(CC(=O)O)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	2937.7	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #4	CC(C)(C)[Si](C)(C)NC(CCC(CN(CC(=O)O)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	2935.4	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #5	CC(C)(C)[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3239.4	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #5	CC(C)(C)[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	2977.1	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #5	CC(C)(C)[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	2915.9	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #6	CC(C)(C)[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O	3175.9	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #6	CC(C)(C)[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O	2960.7	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #6	CC(C)(C)[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O	2991.9	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #7	CC(C)(C)[Si](C)(C)OC(CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)CN(CC(=O)O)[Si](C)(C)C(C)(C)C	3326.1	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #7	CC(C)(C)[Si](C)(C)OC(CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)CN(CC(=O)O)[Si](C)(C)C(C)(C)C	2982.6	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #7	CC(C)(C)[Si](C)(C)OC(CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)CN(CC(=O)O)[Si](C)(C)C(C)(C)C	3023.6	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #8	CC(C)(C)[Si](C)(C)OC(=O)CNCC(O)CCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3229.5	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #8	CC(C)(C)[Si](C)(C)OC(=O)CNCC(O)CCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2995.1	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #8	CC(C)(C)[Si](C)(C)OC(=O)CNCC(O)CCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2913.2	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #9	CC(C)(C)[Si](C)(C)NC(CCC(O)CN(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	3112.7	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #9	CC(C)(C)[Si](C)(C)NC(CCC(O)CN(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	2963.1	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,4TBDMS,isomer #9	CC(C)(C)[Si](C)(C)NC(CCC(O)CN(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	2945.7	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3417.1	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3153.1	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)CNCC(CCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	2840.4	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #2	CC(C)(C)[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	3297.3	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #2	CC(C)(C)[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	3122.1	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #2	CC(C)(C)[Si](C)(C)NC(CCC(CN(CC(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	2888.9	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #3	CC(C)(C)[Si](C)(C)OC(=O)C(CCC(CN(CC(=O)O)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3524.1	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #3	CC(C)(C)[Si](C)(C)OC(=O)C(CCC(CN(CC(=O)O)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3162.4	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #3	CC(C)(C)[Si](C)(C)OC(=O)C(CCC(CN(CC(=O)O)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2921.7	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #4	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3524.4	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #4	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3174.6	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #4	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(CCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2943.4	Standard polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #5	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3506.2	Semi standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #5	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3193.8	Standard non polar	33892256
N(epsilon)-(Carboxymethyl)hydroxylysine,5TBDMS,isomer #5	CC(C)(C)[Si](C)(C)OC(=O)CN(CC(O)CCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2932.0	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (Non-derivatized) - 70eV, Positive	splash10-000l-9400000000-1ca18c4c9f04b062ed6b	2021-09-24	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_1_4) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_1_5) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_2_4) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_2_5) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_2_6) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_2_7) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_2_8) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_2_9) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_2_10) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_2_11) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_3_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_3_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_3_3) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_3_4) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_3_5) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_3_6) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine GC-MS (TMS_3_7) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine 10V, Negative-QTOF	splash10-0udi-0190000000-9b4a4c9aa85ec4044905	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine 20V, Negative-QTOF	splash10-0ue9-3940000000-8df651be4c4f6b1bc552	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine 40V, Negative-QTOF	splash10-0kfx-9400000000-7c4f95710918f494156f	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine 10V, Positive-QTOF	splash10-0fk9-0190000000-8efc04374dba3e585737	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine 20V, Positive-QTOF	splash10-000j-9500000000-a132ae7bd95109c06402	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - N(epsilon)-(Carboxymethyl)hydroxylysine 40V, Positive-QTOF	splash10-052r-9200000000-5773c80f0514465b9fcd	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

26502627

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53461970

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for N(epsilon)-(Carboxymethyl)hydroxylysine (HMDB0250375)

MOL for HMDB0250375 (N(epsilon)-(Carboxymethyl)hydroxylysine)

3D MOL for HMDB0250375 (N(epsilon)-(Carboxymethyl)hydroxylysine)

3D SDF for HMDB0250375 (N(epsilon)-(Carboxymethyl)hydroxylysine)

3D-SDF for HMDB0250375 (N(epsilon)-(Carboxymethyl)hydroxylysine)

PDB for HMDB0250375 (N(epsilon)-(Carboxymethyl)hydroxylysine)

3D PDB for HMDB0250375 (N(epsilon)-(Carboxymethyl)hydroxylysine)

SMILES for HMDB0250375 (N(epsilon)-(Carboxymethyl)hydroxylysine)

INCHI for HMDB0250375 (N(epsilon)-(Carboxymethyl)hydroxylysine)

Structure for HMDB0250375 (N(epsilon)-(Carboxymethyl)hydroxylysine)

3D Structure for HMDB0250375 (N(epsilon)-(Carboxymethyl)hydroxylysine)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra