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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 09:20:29 UTC
Update Date2021-09-26 23:03:56 UTC
HMDB IDHMDB0251747
Secondary Accession NumbersNone
Metabolite Identification
Common NameElinafide
DescriptionElinafide belongs to the class of organic compounds known as isoquinolones and derivatives. These are aromatic polycyclic compounds containing a ketone bearing isoquinoline moiety. Based on a literature review a significant number of articles have been published on Elinafide. This compound has been identified in human blood as reported by (PMID: 31557052 ). Elinafide is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Elinafide is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC31H28N4O4
Average Molecular Weight520.589
Monoisotopic Molecular Weight520.211055398
IUPAC Name3-[2-({3-[(2-{2,4-dioxo-3-azatricyclo[7.3.1.0^{5,13}]trideca-1(12),5,7,9(13),10-pentaen-3-yl}ethyl)amino]propyl}amino)ethyl]-3-azatricyclo[7.3.1.0^{5,13}]trideca-1(12),5,7,9(13),10-pentaene-2,4-dione
Traditional Name3-[2-({3-[(2-{2,4-dioxo-3-azatricyclo[7.3.1.0^{5,13}]trideca-1(12),5,7,9(13),10-pentaen-3-yl}ethyl)amino]propyl}amino)ethyl]-3-azatricyclo[7.3.1.0^{5,13}]trideca-1(12),5,7,9(13),10-pentaene-2,4-dione
CAS Registry NumberNot Available
SMILES
O=C1N(CCNCCCNCCN2C(=O)C3=CC=CC4=C3C(=CC=C4)C2=O)C(=O)C2=CC=CC3=C2C1=CC=C3
InChI Identifier
InChI=1S/C31H28N4O4/c36-28-22-10-1-6-20-7-2-11-23(26(20)22)29(37)34(28)18-16-32-14-5-15-33-17-19-35-30(38)24-12-3-8-21-9-4-13-25(27(21)24)31(35)39/h1-4,6-13,32-33H,5,14-19H2
InChI KeyQUNOQBDEVTWCTA-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as isoquinolones and derivatives. These are aromatic polycyclic compounds containing a ketone bearing isoquinoline moiety.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIsoquinolines and derivatives
Sub ClassIsoquinolones and derivatives
Direct ParentIsoquinolones and derivatives
Alternative Parents
Substituents
  • Isoquinolone
  • Naphthalene
  • Carboxylic acid imide, n-substituted
  • Benzenoid
  • Carboxylic acid imide
  • Amino acid or derivatives
  • Carboxylic acid derivative
  • Secondary aliphatic amine
  • Secondary amine
  • Azacycle
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.64ALOGPS
logP2.97ChemAxon
logS-5ALOGPS
pKa (Strongest Basic)9.75ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area98.82 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity149.67 m³·mol⁻¹ChemAxon
Polarizability58.09 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+220.83430932474
DeepCCS[M-H]-218.43830932474
DeepCCS[M-2H]-251.32230932474
DeepCCS[M+Na]+227.42430932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
ElinafideO=C1N(CCNCCCNCCN2C(=O)C3=CC=CC4=C3C(=CC=C4)C2=O)C(=O)C2=CC=CC3=C2C1=CC=C36510.5Standard polar33892256
ElinafideO=C1N(CCNCCCNCCN2C(=O)C3=CC=CC4=C3C(=CC=C4)C2=O)C(=O)C2=CC=CC3=C2C1=CC=C34647.3Standard non polar33892256
ElinafideO=C1N(CCNCCCNCCN2C(=O)C3=CC=CC4=C3C(=CC=C4)C2=O)C(=O)C2=CC=CC3=C2C1=CC=C34999.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Elinafide,1TMS,isomer #1C[Si](C)(C)N(CCCNCCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O4854.3Semi standard non polar33892256
Elinafide,1TMS,isomer #1C[Si](C)(C)N(CCCNCCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O5023.5Standard non polar33892256
Elinafide,1TMS,isomer #1C[Si](C)(C)N(CCCNCCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O6766.5Standard polar33892256
Elinafide,2TMS,isomer #1C[Si](C)(C)N(CCCN(CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)[Si](C)(C)C)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O4931.0Semi standard non polar33892256
Elinafide,2TMS,isomer #1C[Si](C)(C)N(CCCN(CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)[Si](C)(C)C)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O5015.1Standard non polar33892256
Elinafide,2TMS,isomer #1C[Si](C)(C)N(CCCN(CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)[Si](C)(C)C)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O6570.7Standard polar33892256
Elinafide,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N(CCCNCCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O5049.5Semi standard non polar33892256
Elinafide,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N(CCCNCCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O5206.8Standard non polar33892256
Elinafide,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N(CCCNCCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O6711.8Standard polar33892256
Elinafide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)N(CCCN(CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)[Si](C)(C)C(C)(C)C)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O5364.3Semi standard non polar33892256
Elinafide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)N(CCCN(CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)[Si](C)(C)C(C)(C)C)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O5343.1Standard non polar33892256
Elinafide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)N(CCCN(CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O)[Si](C)(C)C(C)(C)C)CCN1C(=O)C2=CC=CC3=CC=CC(=C23)C1=O6430.5Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Elinafide 10V, Positive-QTOFsplash10-00di-0000090000-07317983c07fcf6d81122021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Elinafide 20V, Positive-QTOFsplash10-00di-0034090000-dd9b95837d20c78dbd5c2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Elinafide 40V, Positive-QTOFsplash10-00fr-0982000000-217ac25342d3a03f079a2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Elinafide 10V, Negative-QTOFsplash10-014i-0000090000-17796ca9c79b083b840e2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Elinafide 20V, Negative-QTOFsplash10-014i-0320190000-e9715bcf821ef40deb042021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Elinafide 40V, Negative-QTOFsplash10-0002-0920000000-64b56e0cb1414f32b2802021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID392704
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound444912
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]