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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 10:45:30 UTC
Update Date2021-09-26 23:05:32 UTC
HMDB IDHMDB0252742
Secondary Accession NumbersNone
Metabolite Identification
Common NameGlecaprevir
DescriptionGlecaprevir belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone. Based on a literature review a significant number of articles have been published on Glecaprevir. This compound has been identified in human blood as reported by (PMID: 31557052 ). Glecaprevir is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Glecaprevir is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC38H46F4N6O9S
Average Molecular Weight838.87
Monoisotopic Molecular Weight838.298310911
IUPAC Name26-tert-butyl-N-[2-(difluoromethyl)-1-{[(1-methylcyclopropyl)sulfonyl]carbamoyl}cyclopropyl]-13,13-difluoro-24,27-dioxo-2,17,23-trioxa-4,11,25,28-tetraazapentacyclo[26.2.1.0^{3,12}.0^{5,10}.0^{18,22}]hentriaconta-3,5,7,9,11,14-hexaene-29-carboxamide
Traditional Name26-tert-butyl-N-[2-(difluoromethyl)-1-[(1-methylcyclopropylsulfonyl)carbamoyl]cyclopropyl]-13,13-difluoro-24,27-dioxo-2,17,23-trioxa-4,11,25,28-tetraazapentacyclo[26.2.1.0^{3,12}.0^{5,10}.0^{18,22}]hentriaconta-3,5,7,9,11,14-hexaene-29-carboxamide
CAS Registry NumberNot Available
SMILES
CC(C)(C)C1NC(=O)OC2CCCC2OCC=CC(F)(F)C2=NC3=CC=CC=C3N=C2OC2CC(N(C2)C1=O)C(=O)NC1(CC1C(F)F)C(=O)NS(=O)(=O)C1(C)CC1
InChI Identifier
InChI=1S/C38H46F4N6O9S/c1-35(2,3)28-32(50)48-19-20(17-24(48)30(49)46-37(18-21(37)29(39)40)33(51)47-58(53,54)36(4)14-15-36)56-31-27(43-22-9-5-6-10-23(22)44-31)38(41,42)13-8-16-55-25-11-7-12-26(25)57-34(52)45-28/h5-6,8-10,13,20-21,24-26,28-29H,7,11-12,14-19H2,1-4H3,(H,45,52)(H,46,49)(H,47,51)
InChI KeyMLSQGNCUYAMAHD-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentCyclic peptides
Alternative Parents
Substituents
  • Cyclic alpha peptide
  • N-acyl-alpha amino acid or derivatives
  • Macrolactam
  • Alpha-amino acid amide
  • Diazanaphthalene
  • Quinoxaline
  • Alpha-amino acid or derivatives
  • Pyrrolidine-2-carboxamide
  • Pyrrolidine carboxylic acid or derivatives
  • Alkyl aryl ether
  • Benzenoid
  • Pyrazine
  • Cyclopropanecarboxylic acid or derivatives
  • Heteroaromatic compound
  • Aminosulfonyl compound
  • Carbamic acid ester
  • Tertiary carboxylic acid amide
  • Sulfonyl
  • Organosulfonic acid or derivatives
  • Organic sulfonic acid or derivatives
  • Pyrrolidine
  • Secondary carboxylic acid amide
  • Carbonic acid derivative
  • Lactam
  • Carboxamide group
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Ether
  • Dialkyl ether
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organosulfur compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organofluoride
  • Organohalogen compound
  • Carbonyl group
  • Alkyl halide
  • Alkyl fluoride
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.26ALOGPS
logP3.95ChemAxon
logS-4.3ALOGPS
pKa (Strongest Acidic)3.74ChemAxon
pKa (Strongest Basic)-1.2ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area195.22 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity194.55 m³·mol⁻¹ChemAxon
Polarizability79.81 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+274.73930932474
DeepCCS[M-H]-272.84830932474
DeepCCS[M-2H]-306.67430932474
DeepCCS[M+Na]+280.51730932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
GlecaprevirCC(C)(C)C1NC(=O)OC2CCCC2OCC=CC(F)(F)C2=NC3=CC=CC=C3N=C2OC2CC(N(C2)C1=O)C(=O)NC1(CC1C(F)F)C(=O)NS(=O)(=O)C1(C)CC16727.0Standard polar33892256
GlecaprevirCC(C)(C)C1NC(=O)OC2CCCC2OCC=CC(F)(F)C2=NC3=CC=CC=C3N=C2OC2CC(N(C2)C1=O)C(=O)NC1(CC1C(F)F)C(=O)NS(=O)(=O)C1(C)CC14474.0Standard non polar33892256
GlecaprevirCC(C)(C)C1NC(=O)OC2CCCC2OCC=CC(F)(F)C2=NC3=CC=CC=C3N=C2OC2CC(N(C2)C1=O)C(=O)NC1(CC1C(F)F)C(=O)NS(=O)(=O)C1(C)CC15300.9Semi standard non polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glecaprevir 10V, Positive-QTOFsplash10-000i-0000000090-1f1ebc72a25cbe53767d2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glecaprevir 20V, Positive-QTOFsplash10-000i-0000002090-6986a753a9b558f660ef2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glecaprevir 40V, Positive-QTOFsplash10-0670-4100090030-ee200d9ef9ea996b34b82021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glecaprevir 10V, Negative-QTOFsplash10-000i-0000000090-b827b8a1f85153c9afc72021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glecaprevir 20V, Negative-QTOFsplash10-000i-1100003190-a6733e7479661b362ac82021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glecaprevir 40V, Negative-QTOFsplash10-01p2-2640461690-41b6b2a62f31cf0a30ca2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkGlecaprevir
METLIN IDNot Available
PubChem Compound76470875
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]