Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 11:03:43 UTC
Update Date2021-09-26 23:05:50 UTC
HMDB IDHMDB0252917
Secondary Accession NumbersNone
Metabolite Identification
Common NameGosogliptin
DescriptionPF-00734200;PF-734200 belongs to the class of organic compounds known as alpha amino acid amides. These are amide derivatives of alpha amino acids. Based on a literature review very few articles have been published on PF-00734200;PF-734200. This compound has been identified in human blood as reported by (PMID: 31557052 ). Gosogliptin is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Gosogliptin is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC17H24F2N6O
Average Molecular Weight366.417
Monoisotopic Molecular Weight366.197965743
IUPAC Name2-{4-[5-(3,3-difluoropyrrolidine-1-carbonyl)pyrrolidin-3-yl]piperazin-1-yl}pyrimidine
Traditional Name2-{4-[5-(3,3-difluoropyrrolidine-1-carbonyl)pyrrolidin-3-yl]piperazin-1-yl}pyrimidine
CAS Registry NumberNot Available
SMILES
FC1(F)CCN(C1)C(=O)C1CC(CN1)N1CCN(CC1)C1=NC=CC=N1
InChI Identifier
InChI=1S/C17H24F2N6O/c18-17(19)2-5-25(12-17)15(26)14-10-13(11-22-14)23-6-8-24(9-7-23)16-20-3-1-4-21-16/h1,3-4,13-14,22H,2,5-12H2
InChI KeyQWEWGXUTRTXFRF-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alpha amino acid amides. These are amide derivatives of alpha amino acids.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentAlpha amino acid amides
Alternative Parents
Substituents
  • Alpha-amino acid amide
  • N-arylpiperazine
  • N-acylpyrrolidine
  • Pyrrolidine carboxylic acid or derivatives
  • Pyrrolidine-2-carboxamide
  • Dialkylarylamine
  • Aminopyrimidine
  • N-alkylpiperazine
  • 1,4-diazinane
  • Piperazine
  • Pyrimidine
  • Heteroaromatic compound
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Carboxamide group
  • Tertiary aliphatic amine
  • Tertiary amine
  • Secondary amine
  • Azacycle
  • Organoheterocyclic compound
  • Secondary aliphatic amine
  • Organofluoride
  • Organohalogen compound
  • Alkyl fluoride
  • Organic oxygen compound
  • Organic nitrogen compound
  • Organic oxide
  • Carbonyl group
  • Alkyl halide
  • Organonitrogen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Amine
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP0.17ALOGPS
logP0.4ChemAxon
logS-2.4ALOGPS
pKa (Strongest Basic)9.38ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area64.6 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity93.03 m³·mol⁻¹ChemAxon
Polarizability37.51 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+184.8730932474
DeepCCS[M-H]-182.51330932474
DeepCCS[M-2H]-216.16730932474
DeepCCS[M+Na]+191.39430932474
AllCCS[M+H]+185.332859911
AllCCS[M+H-H2O]+182.732859911
AllCCS[M+NH4]+187.732859911
AllCCS[M+Na]+188.432859911
AllCCS[M-H]-183.432859911
AllCCS[M+Na-2H]-183.532859911
AllCCS[M+HCOO]-183.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
GosogliptinFC1(F)CCN(C1)C(=O)C1CC(CN1)N1CCN(CC1)C1=NC=CC=N13085.2Standard polar33892256
GosogliptinFC1(F)CCN(C1)C(=O)C1CC(CN1)N1CCN(CC1)C1=NC=CC=N12958.0Standard non polar33892256
GosogliptinFC1(F)CCN(C1)C(=O)C1CC(CN1)N1CCN(CC1)C1=NC=CC=N12967.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Gosogliptin,1TMS,isomer #1C[Si](C)(C)N1CC(N2CCN(C3=NC=CC=N3)CC2)CC1C(=O)N1CCC(F)(F)C12975.6Semi standard non polar33892256
Gosogliptin,1TMS,isomer #1C[Si](C)(C)N1CC(N2CCN(C3=NC=CC=N3)CC2)CC1C(=O)N1CCC(F)(F)C13089.3Standard non polar33892256
Gosogliptin,1TMS,isomer #1C[Si](C)(C)N1CC(N2CCN(C3=NC=CC=N3)CC2)CC1C(=O)N1CCC(F)(F)C13702.2Standard polar33892256
Gosogliptin,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1CC(N2CCN(C3=NC=CC=N3)CC2)CC1C(=O)N1CCC(F)(F)C13134.1Semi standard non polar33892256
Gosogliptin,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1CC(N2CCN(C3=NC=CC=N3)CC2)CC1C(=O)N1CCC(F)(F)C13353.5Standard non polar33892256
Gosogliptin,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1CC(N2CCN(C3=NC=CC=N3)CC2)CC1C(=O)N1CCC(F)(F)C13842.9Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Gosogliptin GC-MS (Non-derivatized) - 70eV, Positivesplash10-001i-3391000000-216dad147cd6837dd4f32021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Gosogliptin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gosogliptin 10V, Positive-QTOFsplash10-014i-0009000000-fcfa4e85768012fb92a72021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gosogliptin 20V, Positive-QTOFsplash10-014i-0019000000-5f71e55089e6d7ad97ae2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gosogliptin 40V, Positive-QTOFsplash10-0gx0-0493000000-dac6614c47a6a5cf6a1e2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gosogliptin 10V, Negative-QTOFsplash10-014i-0019000000-4f121b05f43713eb45032021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gosogliptin 20V, Negative-QTOFsplash10-014i-0239000000-31566bc2ca95377dfa782021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gosogliptin 40V, Negative-QTOFsplash10-0zmi-3914000000-8460c0044998220a74372021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID26544696
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound53400847
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]