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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 13:25:53 UTC
Update Date2021-09-26 23:08:05 UTC
HMDB IDHMDB0254237
Secondary Accession NumbersNone
Metabolite Identification
Common NameN-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide
DescriptionN-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring. Based on a literature review a significant number of articles have been published on N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide. This compound has been identified in human blood as reported by (PMID: 31557052 ). N-[(6r)-6-(dimethylamino)-6,7,8,9-tetrahydro-5h-carbazol-3-yl]-4-fluorobenzamide is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC21H22FN3O
Average Molecular Weight351.425
Monoisotopic Molecular Weight351.174690503
IUPAC NameN-[3-(dimethylamino)-2,3,4,9-tetrahydro-1H-carbazol-6-yl]-4-fluorobenzamide
Traditional NameN-[6-(dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide
CAS Registry NumberNot Available
SMILES
CN(C)C1CCC2=C(C1)C1=C(N2)C=CC(NC(=O)C2=CC=C(F)C=C2)=C1
InChI Identifier
InChI=1S/C21H22FN3O/c1-25(2)16-8-10-20-18(12-16)17-11-15(7-9-19(17)24-20)23-21(26)13-3-5-14(22)6-4-13/h3-7,9,11,16,24H,8,10,12H2,1-2H3,(H,23,26)
InChI KeyGKWHICIUSVVNGX-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassCarbazoles
Direct ParentCarbazoles
Alternative Parents
Substituents
  • Carbazole
  • 4-halobenzoic acid or derivatives
  • Halobenzoic acid or derivatives
  • 3-alkylindole
  • Benzamide
  • Benzoic acid or derivatives
  • Indole
  • Benzoyl
  • Aralkylamine
  • Fluorobenzene
  • Halobenzene
  • Benzenoid
  • Aryl fluoride
  • Aryl halide
  • Monocyclic benzene moiety
  • Pyrrole
  • Heteroaromatic compound
  • Tertiary aliphatic amine
  • Tertiary amine
  • Secondary carboxylic acid amide
  • Amino acid or derivatives
  • Carboxamide group
  • Azacycle
  • Carboxylic acid derivative
  • Organooxygen compound
  • Organic oxide
  • Amine
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Organohalogen compound
  • Organofluoride
  • Organonitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.15ALOGPS
logP3.84ChemAxon
logS-4.3ALOGPS
pKa (Strongest Acidic)13.02ChemAxon
pKa (Strongest Basic)9.96ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area48.13 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity103.8 m³·mol⁻¹ChemAxon
Polarizability39.29 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+193.39730932474
DeepCCS[M-H]-191.03930932474
DeepCCS[M-2H]-225.08630932474
DeepCCS[M+Na]+200.31430932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamideCN(C)C1CCC2=C(C1)C1=C(N2)C=CC(NC(=O)C2=CC=C(F)C=C2)=C14421.7Standard polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamideCN(C)C1CCC2=C(C1)C1=C(N2)C=CC(NC(=O)C2=CC=C(F)C=C2)=C13325.2Standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamideCN(C)C1CCC2=C(C1)C1=C(N2)C=CC(NC(=O)C2=CC=C(F)C=C2)=C13534.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(NC(=O)C3=CC=C(F)C=C3)=CC=C1N2[Si](C)(C)C3272.7Semi standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(NC(=O)C3=CC=C(F)C=C3)=CC=C1N2[Si](C)(C)C3008.4Standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(NC(=O)C3=CC=C(F)C=C3)=CC=C1N2[Si](C)(C)C3638.0Standard polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TMS,isomer #2CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C)=CC=C1[NH]23050.6Semi standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TMS,isomer #2CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C)=CC=C1[NH]23025.4Standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TMS,isomer #2CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C)=CC=C1[NH]23683.8Standard polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,2TMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C)=CC=C1N2[Si](C)(C)C3038.2Semi standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,2TMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C)=CC=C1N2[Si](C)(C)C2979.2Standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,2TMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C)=CC=C1N2[Si](C)(C)C3400.7Standard polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TBDMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(NC(=O)C3=CC=C(F)C=C3)=CC=C1N2[Si](C)(C)C(C)(C)C3478.0Semi standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TBDMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(NC(=O)C3=CC=C(F)C=C3)=CC=C1N2[Si](C)(C)C(C)(C)C3223.1Standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TBDMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(NC(=O)C3=CC=C(F)C=C3)=CC=C1N2[Si](C)(C)C(C)(C)C3718.8Standard polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TBDMS,isomer #2CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C(C)(C)C)=CC=C1[NH]23309.4Semi standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TBDMS,isomer #2CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C(C)(C)C)=CC=C1[NH]23232.8Standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,1TBDMS,isomer #2CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C(C)(C)C)=CC=C1[NH]23767.9Standard polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,2TBDMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C(C)(C)C)=CC=C1N2[Si](C)(C)C(C)(C)C3447.1Semi standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,2TBDMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C(C)(C)C)=CC=C1N2[Si](C)(C)C(C)(C)C3369.7Standard non polar33892256
N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide,2TBDMS,isomer #1CN(C)C1CCC2=C(C1)C1=CC(N(C(=O)C3=CC=C(F)C=C3)[Si](C)(C)C(C)(C)C)=CC=C1N2[Si](C)(C)C(C)(C)C3565.7Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide GC-MS (Non-derivatized) - 70eV, Positivesplash10-00di-2934000000-16c6bd3310137f0772cd2021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - N-[(6R)-6-(Dimethylamino)-6,7,8,9-tetrahydro-5H-carbazol-3-yl]-4-fluorobenzamide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID13915146
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound18971832
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]