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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 14:38:58 UTC

Update Date

2021-09-26 23:09:37 UTC

HMDB ID

HMDB0255091

Secondary Accession Numbers

None

Metabolite Identification

Common Name

N-Benzyl-D-glucamine

Description

N-Benzyl-D-glucamine belongs to the class of organic compounds known as hexoses. These are monosaccharides in which the sugar unit is a is a six-carbon containing moeity. Based on a literature review a small amount of articles have been published on N-Benzyl-D-glucamine. This compound has been identified in human blood as reported by (PMID: 31557052 ). N-benzyl-d-glucamine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically N-Benzyl-D-glucamine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0255091
     RDKit          3D
N-Benzyl-D-glucamine
 40 40  0  0  0  0  0  0  0  0999 V2000
   -5.5763    1.0528   -0.6301 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0452   -0.1836   -1.0158 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6481   -0.3636   -0.5113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1303   -1.5968   -0.8812 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6650    0.7247   -0.8103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4305    1.9404   -0.7066 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6323    0.9302    0.3002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4067    1.1718    1.4649 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7376   -0.2253    0.5810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5402   -1.3836    0.8857 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2255   -0.6366   -0.4434 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2645    0.3146   -0.7584 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1385    0.4674    0.4177 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5400    0.1306    0.0702 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7886   -0.4954   -1.1284 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0787   -0.9529   -1.4166 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0624   -0.7616   -0.4941 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8057   -0.1200    0.7254 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5362    0.3225    0.9870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6485    1.0966    0.3701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1858   -0.2723   -2.0892 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7246   -0.9451   -0.5193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7835   -0.4119    0.6457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6531   -2.3797   -0.5174 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1954    0.7290   -1.7637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3985    2.2215    0.2198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0752    1.8360    0.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0941    2.0156    1.8408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2059    0.0153    1.5384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9608   -2.1725    0.7126 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6652   -1.6343   -0.1860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3377   -0.8660   -1.4180 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8848    1.2142   -1.1034 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7247   -0.0401    1.2576 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1370    1.5998    0.5884 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9525   -0.6126   -1.8194 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2194   -1.4406   -2.3694 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0575   -1.1040   -0.6815 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6548   -0.0142    1.4129 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3396    0.8294    1.9304 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 14  1  0
  1 20  1  0
  2 21  1  0
  2 22  1  0
  3 23  1  0
  4 24  1  0
  5 25  1  0
  6 26  1  0
  7 27  1  0
  8 28  1  0
  9 29  1  0
 10 30  1  0
 11 31  1  0
 11 32  1  0
 12 33  1  0
 13 34  1  0
 13 35  1  0
 15 36  1  0
 16 37  1  0
 17 38  1  0
 18 39  1  0
 19 40  1  0
M  END


  Mrv1652309112116392D          

 19 19  0  0  0  0            999 V2000
   -1.4289    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  4  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 13 16  1  0  0  0  0
 12 17  1  0  0  0  0
 11 18  1  0  0  0  0
 10 19  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0255091

> <DATABASE_NAME>
hmdb

> <SMILES>
OCC(O)C(O)C(O)C(O)CNCC1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C13H21NO5/c15-8-11(17)13(19)12(18)10(16)7-14-6-9-4-2-1-3-5-9/h1-5,10-19H,6-8H2

> <INCHI_KEY>
GXNAHMSFQNFFSO-UHFFFAOYSA-N

> <FORMULA>
C13H21NO5

> <MOLECULAR_WEIGHT>
271.313

> <EXACT_MASS>
271.14197278

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
28.034966335318604

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6-(benzylamino)hexane-1,2,3,4,5-pentol

> <ALOGPS_LOGP>
-0.73

> <JCHEM_LOGP>
-1.6798471343333332

> <ALOGPS_LOGS>
-0.84

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
13.524273137691967

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.649491271275114

> <JCHEM_PKA_STRONGEST_BASIC>
8.29750858854569

> <JCHEM_POLAR_SURFACE_AREA>
113.18

> <JCHEM_REFRACTIVITY>
69.4483

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.93e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6-(benzylamino)hexane-1,2,3,4,5-pentol

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0255091
     RDKit          3D
N-Benzyl-D-glucamine
 40 40  0  0  0  0  0  0  0  0999 V2000
   -5.5763    1.0528   -0.6301 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0452   -0.1836   -1.0158 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6481   -0.3636   -0.5113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1303   -1.5968   -0.8812 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6650    0.7247   -0.8103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4305    1.9404   -0.7066 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6323    0.9302    0.3002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4067    1.1718    1.4649 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7376   -0.2253    0.5810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5402   -1.3836    0.8857 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2255   -0.6366   -0.4434 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2645    0.3146   -0.7584 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1385    0.4674    0.4177 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5400    0.1306    0.0702 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7886   -0.4954   -1.1284 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0787   -0.9529   -1.4166 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0624   -0.7616   -0.4941 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8057   -0.1200    0.7254 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5362    0.3225    0.9870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6485    1.0966    0.3701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1858   -0.2723   -2.0892 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7246   -0.9451   -0.5193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7835   -0.4119    0.6457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6531   -2.3797   -0.5174 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1954    0.7290   -1.7637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3985    2.2215    0.2198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0752    1.8360    0.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0941    2.0156    1.8408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2059    0.0153    1.5384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9608   -2.1725    0.7126 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6652   -1.6343   -0.1860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3377   -0.8660   -1.4180 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8848    1.2142   -1.1034 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7247   -0.0401    1.2576 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1370    1.5998    0.5884 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9525   -0.6126   -1.8194 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2194   -1.4406   -2.3694 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0575   -1.1040   -0.6815 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6548   -0.0142    1.4129 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3396    0.8294    1.9304 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 14  1  0
  1 20  1  0
  2 21  1  0
  2 22  1  0
  3 23  1  0
  4 24  1  0
  5 25  1  0
  6 26  1  0
  7 27  1  0
  8 28  1  0
  9 29  1  0
 10 30  1  0
 11 31  1  0
 11 32  1  0
 12 33  1  0
 13 34  1  0
 13 35  1  0
 15 36  1  0
 16 37  1  0
 17 38  1  0
 18 39  1  0
 19 40  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      -2.667   3.080   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.667   4.620   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.334   5.390   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000   3.080   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.334   5.390   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       2.667   4.620   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       4.001   5.390   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.668   5.390   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.002   4.620   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.336   5.390   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.669   4.620   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      12.003   5.390   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       9.336   6.930   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       8.002   3.080   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       6.668   6.930   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       5.335   3.080   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    7                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1                                                       
CONECT    7    4    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   19                                                  
CONECT   11   10   12   18                                                  
CONECT   12   11   13   17                                                  
CONECT   13   12   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   13                                                            
CONECT   17   12                                                            
CONECT   18   11                                                            
CONECT   19   10                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   38    0
END

COMPND    HMDB0255091
HETATM    1  O1  UNL     1      -5.576   1.053  -0.630  1.00  0.00           O  
HETATM    2  C1  UNL     1      -5.045  -0.184  -1.016  1.00  0.00           C  
HETATM    3  C2  UNL     1      -3.648  -0.364  -0.511  1.00  0.00           C  
HETATM    4  O2  UNL     1      -3.130  -1.597  -0.881  1.00  0.00           O  
HETATM    5  C3  UNL     1      -2.665   0.725  -0.810  1.00  0.00           C  
HETATM    6  O3  UNL     1      -3.430   1.940  -0.707  1.00  0.00           O  
HETATM    7  C4  UNL     1      -1.632   0.930   0.300  1.00  0.00           C  
HETATM    8  O4  UNL     1      -2.407   1.172   1.465  1.00  0.00           O  
HETATM    9  C5  UNL     1      -0.738  -0.225   0.581  1.00  0.00           C  
HETATM   10  O5  UNL     1      -1.540  -1.384   0.886  1.00  0.00           O  
HETATM   11  C6  UNL     1       0.225  -0.637  -0.443  1.00  0.00           C  
HETATM   12  N1  UNL     1       1.264   0.315  -0.758  1.00  0.00           N  
HETATM   13  C7  UNL     1       2.139   0.467   0.418  1.00  0.00           C  
HETATM   14  C8  UNL     1       3.540   0.131   0.070  1.00  0.00           C  
HETATM   15  C9  UNL     1       3.789  -0.495  -1.128  1.00  0.00           C  
HETATM   16  C10 UNL     1       5.079  -0.953  -1.417  1.00  0.00           C  
HETATM   17  C11 UNL     1       6.062  -0.762  -0.494  1.00  0.00           C  
HETATM   18  C12 UNL     1       5.806  -0.120   0.725  1.00  0.00           C  
HETATM   19  C13 UNL     1       4.536   0.323   0.987  1.00  0.00           C  
HETATM   20  H1  UNL     1      -5.649   1.097   0.370  1.00  0.00           H  
HETATM   21  H2  UNL     1      -5.186  -0.272  -2.089  1.00  0.00           H  
HETATM   22  H3  UNL     1      -5.725  -0.945  -0.519  1.00  0.00           H  
HETATM   23  H4  UNL     1      -3.784  -0.412   0.646  1.00  0.00           H  
HETATM   24  H5  UNL     1      -3.653  -2.380  -0.517  1.00  0.00           H  
HETATM   25  H6  UNL     1      -2.195   0.729  -1.764  1.00  0.00           H  
HETATM   26  H7  UNL     1      -3.398   2.222   0.220  1.00  0.00           H  
HETATM   27  H8  UNL     1      -1.075   1.836   0.070  1.00  0.00           H  
HETATM   28  H9  UNL     1      -2.094   2.016   1.841  1.00  0.00           H  
HETATM   29  H10 UNL     1      -0.206   0.015   1.538  1.00  0.00           H  
HETATM   30  H11 UNL     1      -0.961  -2.172   0.713  1.00  0.00           H  
HETATM   31  H12 UNL     1       0.665  -1.634  -0.186  1.00  0.00           H  
HETATM   32  H13 UNL     1      -0.338  -0.866  -1.418  1.00  0.00           H  
HETATM   33  H14 UNL     1       0.885   1.214  -1.103  1.00  0.00           H  
HETATM   34  H15 UNL     1       1.725  -0.040   1.258  1.00  0.00           H  
HETATM   35  H16 UNL     1       2.137   1.600   0.588  1.00  0.00           H  
HETATM   36  H17 UNL     1       2.952  -0.613  -1.819  1.00  0.00           H  
HETATM   37  H18 UNL     1       5.219  -1.441  -2.369  1.00  0.00           H  
HETATM   38  H19 UNL     1       7.057  -1.104  -0.681  1.00  0.00           H  
HETATM   39  H20 UNL     1       6.655  -0.014   1.413  1.00  0.00           H  
HETATM   40  H21 UNL     1       4.340   0.829   1.930  1.00  0.00           H  
CONECT    1    2   20
CONECT    2    3   21   22
CONECT    3    4    5   23
CONECT    4   24
CONECT    5    6    7   25
CONECT    6   26
CONECT    7    8    9   27
CONECT    8   28
CONECT    9   10   11   29
CONECT   10   30
CONECT   11   12   31   32
CONECT   12   13   33
CONECT   13   14   34   35
CONECT   14   15   15   19
CONECT   15   16   36
CONECT   16   17   17   37
CONECT   17   18   38
CONECT   18   19   19   39
CONECT   19   40
END

HMDB0255091
     RDKit          3D
N-Benzyl-D-glucamine
 40 40  0  0  0  0  0  0  0  0999 V2000
   -5.5763    1.0528   -0.6301 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0452   -0.1836   -1.0158 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6481   -0.3636   -0.5113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1303   -1.5968   -0.8812 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6650    0.7247   -0.8103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4305    1.9404   -0.7066 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6323    0.9302    0.3002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4067    1.1718    1.4649 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7376   -0.2253    0.5810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5402   -1.3836    0.8857 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2255   -0.6366   -0.4434 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2645    0.3146   -0.7584 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1385    0.4674    0.4177 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5400    0.1306    0.0702 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7886   -0.4954   -1.1284 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0787   -0.9529   -1.4166 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0624   -0.7616   -0.4941 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8057   -0.1200    0.7254 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5362    0.3225    0.9870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6485    1.0966    0.3701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1858   -0.2723   -2.0892 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7246   -0.9451   -0.5193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7835   -0.4119    0.6457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6531   -2.3797   -0.5174 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1954    0.7290   -1.7637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3985    2.2215    0.2198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0752    1.8360    0.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0941    2.0156    1.8408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2059    0.0153    1.5384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9608   -2.1725    0.7126 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6652   -1.6343   -0.1860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3377   -0.8660   -1.4180 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8848    1.2142   -1.1034 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7247   -0.0401    1.2576 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1370    1.5998    0.5884 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9525   -0.6126   -1.8194 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2194   -1.4406   -2.3694 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0575   -1.1040   -0.6815 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6548   -0.0142    1.4129 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3396    0.8294    1.9304 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 14  1  0
  1 20  1  0
  2 21  1  0
  2 22  1  0
  3 23  1  0
  4 24  1  0
  5 25  1  0
  6 26  1  0
  7 27  1  0
  8 28  1  0
  9 29  1  0
 10 30  1  0
 11 31  1  0
 11 32  1  0
 12 33  1  0
 13 34  1  0
 13 35  1  0
 15 36  1  0
 16 37  1  0
 17 38  1  0
 18 39  1  0
 19 40  1  0
M  END

View in JSmol View NMR Assignments View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₁₃H₂₁NO₅

Average Molecular Weight

271.313

Monoisotopic Molecular Weight

271.14197278

IUPAC Name

6-(benzylamino)hexane-1,2,3,4,5-pentol

Traditional Name

6-(benzylamino)hexane-1,2,3,4,5-pentol

CAS Registry Number

Not Available

SMILES

OCC(O)C(O)C(O)C(O)CNCC1=CC=CC=C1

InChI Identifier

InChI=1S/C13H21NO5/c15-8-11(17)13(19)12(18)10(16)7-14-6-9-4-2-1-3-5-9/h1-5,10-19H,6-8H2

InChI Key

GXNAHMSFQNFFSO-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hexoses. These are monosaccharides in which the sugar unit is a is a six-carbon containing moeity.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Hexoses

Alternative Parents

Substituents

Hexose monosaccharide
Benzylamine
Phenylmethylamine
Aralkylamine
Monocyclic benzene moiety
Benzenoid
1,3-aminoalcohol
Secondary alcohol
1,2-aminoalcohol
Polyol
Secondary aliphatic amine
Secondary amine
Primary alcohol
Hydrocarbon derivative
Organonitrogen compound
Organopnictogen compound
Organic nitrogen compound
Amine
Alcohol
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	-0.73	ALOGPS
logP	-1.7	ChemAxon
logS	-0.84	ALOGPS
pKa (Strongest Acidic)	12.65	ChemAxon
pKa (Strongest Basic)	8.3	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	113.18 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	69.45 m³·mol⁻¹	ChemAxon
Polarizability	28.03 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	159.66	30932474
DeepCCS	[M-H]-	157.302	30932474
DeepCCS	[M-2H]-	190.188	30932474
DeepCCS	[M+Na]+	165.753	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
N-Benzyl-D-glucamine	OCC(O)C(O)C(O)C(O)CNCC1=CC=CC=C1	3163.7	Standard polar	33892256
N-Benzyl-D-glucamine	OCC(O)C(O)C(O)C(O)CNCC1=CC=CC=C1	2442.5	Standard non polar	33892256
N-Benzyl-D-glucamine	OCC(O)C(O)C(O)C(O)CNCC1=CC=CC=C1	2485.8	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
N-Benzyl-D-glucamine,6TMS,isomer #1	C[Si](C)(C)OCC(O[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C(CN(CC1=CC=CC=C1)[Si](C)(C)C)O[Si](C)(C)C	2478.6	Semi standard non polar	33892256
N-Benzyl-D-glucamine,6TMS,isomer #1	C[Si](C)(C)OCC(O[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C(CN(CC1=CC=CC=C1)[Si](C)(C)C)O[Si](C)(C)C	2513.8	Standard non polar	33892256
N-Benzyl-D-glucamine,6TMS,isomer #1	C[Si](C)(C)OCC(O[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C(CN(CC1=CC=CC=C1)[Si](C)(C)C)O[Si](C)(C)C	2614.8	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (Non-derivatized) - 70eV, Positive	splash10-114i-9660000000-11a5616b7869ffe3030e	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_1_4) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_1_5) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_1_6) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_4) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_5) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_6) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_7) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_8) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_9) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_10) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_11) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_12) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_13) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_14) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_2_15) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_3_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Benzyl-D-glucamine GC-MS (TMS_3_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum

NMR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted 1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-10-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

13292255

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14777110

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for N-Benzyl-D-glucamine (HMDB0255091)

MOL for HMDB0255091 (N-Benzyl-D-glucamine)

3D MOL for HMDB0255091 (N-Benzyl-D-glucamine)

3D SDF for HMDB0255091 (N-Benzyl-D-glucamine)

3D-SDF for HMDB0255091 (N-Benzyl-D-glucamine)

PDB for HMDB0255091 (N-Benzyl-D-glucamine)

3D PDB for HMDB0255091 (N-Benzyl-D-glucamine)

SMILES for HMDB0255091 (N-Benzyl-D-glucamine)

INCHI for HMDB0255091 (N-Benzyl-D-glucamine)

Structure for HMDB0255091 (N-Benzyl-D-glucamine)

3D Structure for HMDB0255091 (N-Benzyl-D-glucamine)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

NMR Spectra