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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 15:07:41 UTC
Update Date2021-09-26 23:10:18 UTC
HMDB IDHMDB0255481
Secondary Accession NumbersNone
Metabolite Identification
Common Name5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine
Description5-chloro-N4-(cyclopropylmethyl)-2-methyl-N4-propyl-N6-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine belongs to the class of organic compounds known as dialkylarylamines. These are aliphatic aromatic amines in which the amino group is linked to two aliphatic chains and one aromatic group. 5-chloro-N4-(cyclopropylmethyl)-2-methyl-N4-propyl-N6-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine is a very strong basic compound (based on its pKa). This compound has been identified in human blood as reported by (PMID: 31557052 ). 5-chloro-4-n-(cyclopropylmethyl)-2-methyl-4-n-propyl-6-n-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
2-Methyl-4-(N-propyl-N-cycloproanemethylamino)-5-chloro-6-(2,4,6-trichloranilino)pyrimidineMeSH
Chemical FormulaC18H20Cl4N4
Average Molecular Weight434.19
Monoisotopic Molecular Weight432.0442075
IUPAC Name5-chloro-N4-(cyclopropylmethyl)-2-methyl-N4-propyl-N6-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine
Traditional Name5-chloro-N4-(cyclopropylmethyl)-2-methyl-N4-propyl-N6-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine
CAS Registry NumberNot Available
SMILES
CCCN(CC1CC1)C1=NC(C)=NC(NC2=C(Cl)C=C(Cl)C=C2Cl)=C1Cl
InChI Identifier
InChI=1S/C18H20Cl4N4/c1-3-6-26(9-11-4-5-11)18-15(22)17(23-10(2)24-18)25-16-13(20)7-12(19)8-14(16)21/h7-8,11H,3-6,9H2,1-2H3,(H,23,24,25)
InChI KeyKNADXBVKFAUMCR-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dialkylarylamines. These are aliphatic aromatic amines in which the amino group is linked to two aliphatic chains and one aromatic group.
KingdomOrganic compounds
Super ClassOrganic nitrogen compounds
ClassOrganonitrogen compounds
Sub ClassAmines
Direct ParentDialkylarylamines
Alternative Parents
Substituents
  • Dialkylarylamine
  • Aniline or substituted anilines
  • Aminopyrimidine
  • Chlorobenzene
  • Halobenzene
  • Halopyrimidine
  • Imidolactam
  • Benzenoid
  • Pyrimidine
  • Aryl halide
  • Aryl chloride
  • Monocyclic benzene moiety
  • Heteroaromatic compound
  • Organoheterocyclic compound
  • Secondary amine
  • Azacycle
  • Organochloride
  • Organohalogen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP7.31ALOGPS
logP7.16ChemAxon
logS-5.3ALOGPS
pKa (Strongest Acidic)11.75ChemAxon
pKa (Strongest Basic)6.01ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area41.05 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity111.32 m³·mol⁻¹ChemAxon
Polarizability43.45 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+189.24930932474
DeepCCS[M-H]-186.89130932474
DeepCCS[M-2H]-221.07230932474
DeepCCS[M+Na]+196.41630932474
AllCCS[M+H]+192.432859911
AllCCS[M+H-H2O]+190.232859911
AllCCS[M+NH4]+194.532859911
AllCCS[M+Na]+195.132859911
AllCCS[M-H]-185.432859911
AllCCS[M+Na-2H]-185.232859911
AllCCS[M+HCOO]-185.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamineCCCN(CC1CC1)C1=NC(C)=NC(NC2=C(Cl)C=C(Cl)C=C2Cl)=C1Cl4355.5Standard polar33892256
5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamineCCCN(CC1CC1)C1=NC(C)=NC(NC2=C(Cl)C=C(Cl)C=C2Cl)=C1Cl2918.6Standard non polar33892256
5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamineCCCN(CC1CC1)C1=NC(C)=NC(NC2=C(Cl)C=C(Cl)C=C2Cl)=C1Cl2984.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine,1TMS,isomer #1CCCN(CC1CC1)C1=NC(C)=NC(N(C2=C(Cl)C=C(Cl)C=C2Cl)[Si](C)(C)C)=C1Cl2835.3Semi standard non polar33892256
5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine,1TMS,isomer #1CCCN(CC1CC1)C1=NC(C)=NC(N(C2=C(Cl)C=C(Cl)C=C2Cl)[Si](C)(C)C)=C1Cl2847.8Standard non polar33892256
5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine,1TMS,isomer #1CCCN(CC1CC1)C1=NC(C)=NC(N(C2=C(Cl)C=C(Cl)C=C2Cl)[Si](C)(C)C)=C1Cl3792.0Standard polar33892256
5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine,1TBDMS,isomer #1CCCN(CC1CC1)C1=NC(C)=NC(N(C2=C(Cl)C=C(Cl)C=C2Cl)[Si](C)(C)C(C)(C)C)=C1Cl2994.3Semi standard non polar33892256
5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine,1TBDMS,isomer #1CCCN(CC1CC1)C1=NC(C)=NC(N(C2=C(Cl)C=C(Cl)C=C2Cl)[Si](C)(C)C(C)(C)C)=C1Cl3102.2Standard non polar33892256
5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine,1TBDMS,isomer #1CCCN(CC1CC1)C1=NC(C)=NC(N(C2=C(Cl)C=C(Cl)C=C2Cl)[Si](C)(C)C(C)(C)C)=C1Cl3832.2Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine GC-MS (Non-derivatized) - 70eV, Positivesplash10-054n-9308300000-db6e3a8a99b24c87b6f32021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 5-Chloro-4-N-(cyclopropylmethyl)-2-methyl-4-N-propyl-6-N-(2,4,6-trichlorophenyl)pyrimidine-4,6-diamine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound176157
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]