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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 15:23:10 UTC
Update Date2021-09-26 23:10:35 UTC
HMDB IDHMDB0255608
Secondary Accession NumbersNone
Metabolite Identification
Common NameNiludipine
DescriptionNiludipine, also known as bay a 7168, belongs to the class of organic compounds known as dihydropyridinecarboxylic acids and derivatives. Dihydropyridinecarboxylic acids and derivatives are compounds containing a dihydropyridine moiety bearing a carboxylic acid group. Niludipine is a calcium channel blocker of the dihydropyridine class. Niludipine is an extremely weak basic (essentially neutral) compound (based on its pKa). It is a vasodilator that acts upon the coronary arteries of the heart-lung. It was found to produce a calcium antagonistic effect on the smooth muscle of hearts of canines and guinea pigs inhibiting myocardial oxidative metabolism. This compound has been identified in human blood as reported by (PMID: 31557052 ). Niludipine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Niludipine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
Bay a 7168MeSH
3,5-Pyridinedicarboxylic acid, 1,4-dihydro-2,6-dimethyl-4-(3-nitrophenyl)-, bis(2-propoxyethyl)esterMeSH
NiludipinMeSH
Niludipin, (+-)-isomerMeSH
Bis(2-propoxyethyl)-1,4-dihydro-2,6-dimethyl-4-(3-nitrophenyl)-3,5-pyridinedicarboxylateMeSH
Chemical FormulaC25H34N2O8
Average Molecular Weight490.553
Monoisotopic Molecular Weight490.231516063
IUPAC Name3,5-bis(2-propoxyethyl) 2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate
Traditional Nameniludipine
CAS Registry NumberNot Available
SMILES
[H]N1C(C)=C(C(C2=CC(=CC=C2)[N+]([O-])=O)C(C(=O)OCCOCCC)=C1C)C(=O)OCCOCCC
InChI Identifier
InChI=1S/C25H34N2O8/c1-5-10-32-12-14-34-24(28)21-17(3)26-18(4)22(25(29)35-15-13-33-11-6-2)23(21)19-8-7-9-20(16-19)27(30)31/h7-9,16,23,26H,5-6,10-15H2,1-4H3
InChI KeyVZWXXKDFACOXNT-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dihydropyridinecarboxylic acids and derivatives. Dihydropyridinecarboxylic acids and derivatives are compounds containing a dihydropyridine moiety bearing a carboxylic acid group.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyridines and derivatives
Sub ClassHydropyridines
Direct ParentDihydropyridinecarboxylic acids and derivatives
Alternative Parents
Substituents
  • Dihydropyridinecarboxylic acid derivative
  • Nitrobenzene
  • Nitroaromatic compound
  • Monocyclic benzene moiety
  • Dicarboxylic acid or derivatives
  • Benzenoid
  • Vinylogous amide
  • Enoate ester
  • Alpha,beta-unsaturated carboxylic ester
  • Amino acid or derivatives
  • Carboxylic acid ester
  • C-nitro compound
  • Organic nitro compound
  • Carboxylic acid derivative
  • Dialkyl ether
  • Secondary aliphatic amine
  • Enamine
  • Ether
  • Azacycle
  • Organic 1,3-dipolar compound
  • Organic oxoazanium
  • Secondary amine
  • Propargyl-type 1,3-dipolar organic compound
  • Allyl-type 1,3-dipolar organic compound
  • Organic oxygen compound
  • Carbonyl group
  • Amine
  • Organopnictogen compound
  • Organic nitrogen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Organic zwitterion
  • Organic oxide
  • Hydrocarbon derivative
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.18ALOGPS
logP3.48ChemAxon
logS-5.1ALOGPS
pKa (Strongest Acidic)19.46ChemAxon
pKa (Strongest Basic)-3.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area126.23 ŲChemAxon
Rotatable Bond Count16ChemAxon
Refractivity131.79 m³·mol⁻¹ChemAxon
Polarizability52.64 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+207.40330932474
DeepCCS[M-H]-205.00730932474
DeepCCS[M-2H]-237.88930932474
DeepCCS[M+Na]+213.31530932474
AllCCS[M+H]+215.832859911
AllCCS[M+H-H2O]+214.032859911
AllCCS[M+NH4]+217.432859911
AllCCS[M+Na]+217.932859911
AllCCS[M-H]-210.132859911
AllCCS[M+Na-2H]-211.932859911
AllCCS[M+HCOO]-214.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Niludipine[H]N1C(C)=C(C(C2=CC(=CC=C2)[N+]([O-])=O)C(C(=O)OCCOCCC)=C1C)C(=O)OCCOCCC4360.3Standard polar33892256
Niludipine[H]N1C(C)=C(C(C2=CC(=CC=C2)[N+]([O-])=O)C(C(=O)OCCOCCC)=C1C)C(=O)OCCOCCC3180.6Standard non polar33892256
Niludipine[H]N1C(C)=C(C(C2=CC(=CC=C2)[N+]([O-])=O)C(C(=O)OCCOCCC)=C1C)C(=O)OCCOCCC3352.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Niludipine,1TMS,isomer #1CCCOCCOC(=O)C1=C(C)N([Si](C)(C)C)C(C)=C(C(=O)OCCOCCC)C1C1=CC=CC([N+](=O)[O-])=C13460.4Semi standard non polar33892256
Niludipine,1TMS,isomer #1CCCOCCOC(=O)C1=C(C)N([Si](C)(C)C)C(C)=C(C(=O)OCCOCCC)C1C1=CC=CC([N+](=O)[O-])=C12982.5Standard non polar33892256
Niludipine,1TMS,isomer #1CCCOCCOC(=O)C1=C(C)N([Si](C)(C)C)C(C)=C(C(=O)OCCOCCC)C1C1=CC=CC([N+](=O)[O-])=C14453.6Standard polar33892256
Niludipine,1TBDMS,isomer #1CCCOCCOC(=O)C1=C(C)N([Si](C)(C)C(C)(C)C)C(C)=C(C(=O)OCCOCCC)C1C1=CC=CC([N+](=O)[O-])=C13710.8Semi standard non polar33892256
Niludipine,1TBDMS,isomer #1CCCOCCOC(=O)C1=C(C)N([Si](C)(C)C(C)(C)C)C(C)=C(C(=O)OCCOCCC)C1C1=CC=CC([N+](=O)[O-])=C13216.5Standard non polar33892256
Niludipine,1TBDMS,isomer #1CCCOCCOC(=O)C1=C(C)N([Si](C)(C)C(C)(C)C)C(C)=C(C(=O)OCCOCCC)C1C1=CC=CC([N+](=O)[O-])=C14433.2Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Niludipine GC-MS (Non-derivatized) - 70eV, Positivesplash10-000i-9004400000-b1439f487a4be47933c02021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Niludipine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Niludipine 10V, Positive-QTOFsplash10-0006-6000900000-12166804aaf9d705775b2017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Niludipine 20V, Positive-QTOFsplash10-000f-9000500000-21f81a6ea04cab7be6a02017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Niludipine 40V, Positive-QTOFsplash10-0006-9000100000-997849e172c46baa96052017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Niludipine 10V, Negative-QTOFsplash10-000i-2000900000-5b859beb1a3895f9454a2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Niludipine 20V, Negative-QTOFsplash10-000i-9000800000-29a638774a2ec2f6918d2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Niludipine 40V, Negative-QTOFsplash10-0a4l-9000000000-493ad74afe0d6639cdf92017-07-26Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB09240
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNiludipine
METLIN IDNot Available
PubChem Compound89767
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]