Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 15:53:39 UTC
Update Date2021-09-26 23:11:09 UTC
HMDB IDHMDB0255908
Secondary Accession NumbersNone
Metabolite Identification
Common NameOctimibate
DescriptionOctimibate, also known as octimibic acid, belongs to the class of organic compounds known as phenylimidazoles. These are polycyclic aromatic compounds containing a benzene ring linked to an imidazole ring through a CC or CN bond. Based on a literature review very few articles have been published on Octimibate. This compound has been identified in human blood as reported by (PMID: 31557052 ). Octimibate is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Octimibate is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
Octimibic acidGenerator
8-[(1,4,5-Triphenyl-1H-imidazol-2-yl)oxy]octanoateHMDB
8-((1,4,5-Triphenylimidazol-2-yl)oxy)octanoic acidHMDB
Chemical FormulaC29H30N2O3
Average Molecular Weight454.57
Monoisotopic Molecular Weight454.225642834
IUPAC Name8-[(1,4,5-triphenyl-1H-imidazol-2-yl)oxy]octanoic acid
Traditional Name8-[(1,4,5-triphenylimidazol-2-yl)oxy]octanoic acid
CAS Registry NumberNot Available
SMILES
OC(=O)CCCCCCCOC1=NC(=C(N1C1=CC=CC=C1)C1=CC=CC=C1)C1=CC=CC=C1
InChI Identifier
InChI=1S/C29H30N2O3/c32-26(33)21-13-2-1-3-14-22-34-29-30-27(23-15-7-4-8-16-23)28(24-17-9-5-10-18-24)31(29)25-19-11-6-12-20-25/h4-12,15-20H,1-3,13-14,21-22H2,(H,32,33)
InChI KeyJJNUVQIGQRFZAC-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenylimidazoles. These are polycyclic aromatic compounds containing a benzene ring linked to an imidazole ring through a CC or CN bond.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassAzoles
Sub ClassImidazoles
Direct ParentPhenylimidazoles
Alternative Parents
Substituents
  • 4-phenylimidazole
  • 1-phenylimidazole
  • 5-phenylimidazole
  • 1,2,4,5-tetrasubstituted imidazole
  • Imidazolyl carboxylic acid derivative
  • Medium-chain fatty acid
  • Alkyl aryl ether
  • Amino fatty acid
  • Heterocyclic fatty acid
  • Monocyclic benzene moiety
  • Fatty acyl
  • Fatty acid
  • Benzenoid
  • N-substituted imidazole
  • Heteroaromatic compound
  • Carboxylic acid derivative
  • Carboxylic acid
  • Ether
  • Azacycle
  • Monocarboxylic acid or derivatives
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP6.53ALOGPS
logP7.65ChemAxon
logS-6.3ALOGPS
pKa (Strongest Acidic)4.5ChemAxon
pKa (Strongest Basic)2.42ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area64.35 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity143.66 m³·mol⁻¹ChemAxon
Polarizability52.01 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+210.60130932474
DeepCCS[M-H]-208.24330932474
DeepCCS[M-2H]-242.30630932474
DeepCCS[M+Na]+218.47230932474
AllCCS[M+H]+211.732859911
AllCCS[M+H-H2O]+209.632859911
AllCCS[M+NH4]+213.532859911
AllCCS[M+Na]+214.132859911
AllCCS[M-H]-208.832859911
AllCCS[M+Na-2H]-209.332859911
AllCCS[M+HCOO]-210.132859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
OctimibateOC(=O)CCCCCCCOC1=NC(=C(N1C1=CC=CC=C1)C1=CC=CC=C1)C1=CC=CC=C15032.3Standard polar33892256
OctimibateOC(=O)CCCCCCCOC1=NC(=C(N1C1=CC=CC=C1)C1=CC=CC=C1)C1=CC=CC=C13464.8Standard non polar33892256
OctimibateOC(=O)CCCCCCCOC1=NC(=C(N1C1=CC=CC=C1)C1=CC=CC=C1)C1=CC=CC=C13648.2Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Octimibate GC-MS (Non-derivatized) - 70eV, Positivesplash10-0gc0-3729100000-94859d121dd7076034822021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Octimibate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Octimibate GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Octimibate GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-04Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID59105
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound65676
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]