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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 16:45:44 UTC
Update Date2021-09-26 23:11:59 UTC
HMDB IDHMDB0256374
Secondary Accession NumbersNone
Metabolite Identification
Common Name(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid
Description2-{[hydroxy(5-hydroxy-3,4-dihydro-2H-pyrrol-2-yl)methylidene]amino}-3-(4H-imidazol-4-yl)propanoic acid belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. Based on a literature review very few articles have been published on 2-{[hydroxy(5-hydroxy-3,4-dihydro-2H-pyrrol-2-yl)methylidene]amino}-3-(4H-imidazol-4-yl)propanoic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). (2s)-3-(4h-imidazol-4-yl)-2-[[(2s)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically (2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
2-{[hydroxy(5-hydroxy-3,4-dihydro-2H-pyrrol-2-yl)methylidene]amino}-3-(4H-imidazol-4-yl)propanoateGenerator
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoateGenerator
Chemical FormulaC11H14N4O4
Average Molecular Weight266.257
Monoisotopic Molecular Weight266.101504947
IUPAC Name3-(4H-imidazol-4-yl)-2-[(5-oxopyrrolidin-2-yl)formamido]propanoic acid
Traditional Name3-(4H-imidazol-4-yl)-2-[(5-oxopyrrolidin-2-yl)formamido]propanoic acid
CAS Registry NumberNot Available
SMILES
OC(=O)C(CC1C=NC=N1)NC(=O)C1CCC(=O)N1
InChI Identifier
InChI=1S/C11H14N4O4/c16-9-2-1-7(14-9)10(17)15-8(11(18)19)3-6-4-12-5-13-6/h4-8H,1-3H2,(H,14,16)(H,15,17)(H,18,19)
InChI KeyDDQCRHMAPMBAFL-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentDipeptides
Alternative Parents
Substituents
  • Alpha-dipeptide
  • N-acyl-alpha-amino acid
  • Proline or derivatives
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • Alpha-amino acid or derivatives
  • Imidazolyl carboxylic acid derivative
  • Pyrrolidine carboxylic acid or derivatives
  • Pyrrolidine-2-carboxamide
  • 2-pyrrolidone
  • Pyrrolidone
  • Pyrrolidine
  • Imidazole
  • Secondary carboxylic acid amide
  • Carboxamide group
  • Lactam
  • Propargyl-type 1,3-dipolar organic compound
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Carbonyl group
  • Organooxygen compound
  • Organic nitrogen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-1.5ALOGPS
logP-3.2ChemAxon
logS-2.1ALOGPS
pKa (Strongest Acidic)3.78ChemAxon
pKa (Strongest Basic)3.26ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area120.22 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity62.52 m³·mol⁻¹ChemAxon
Polarizability25.23 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+155.90230932474
DeepCCS[M-H]-153.54430932474
DeepCCS[M-2H]-186.52530932474
DeepCCS[M+Na]+161.99530932474
AllCCS[M+H]+161.132859911
AllCCS[M+H-H2O]+157.532859911
AllCCS[M+NH4]+164.432859911
AllCCS[M+Na]+165.432859911
AllCCS[M-H]-160.032859911
AllCCS[M+Na-2H]-159.732859911
AllCCS[M+HCOO]-159.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acidOC(=O)C(CC1C=NC=N1)NC(=O)C1CCC(=O)N13475.2Standard polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acidOC(=O)C(CC1C=NC=N1)NC(=O)C1CCC(=O)N12290.8Standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acidOC(=O)C(CC1C=NC=N1)NC(=O)C1CCC(=O)N12752.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TMS,isomer #1C[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1)[Si](C)(C)C2740.3Semi standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TMS,isomer #1C[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1)[Si](C)(C)C2463.7Standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TMS,isomer #1C[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1)[Si](C)(C)C4655.2Standard polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TMS,isomer #2C[Si](C)(C)OC(=O)C(CC1C=NC=N1)NC(=O)C1CCC(=O)N1[Si](C)(C)C2661.0Semi standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TMS,isomer #2C[Si](C)(C)OC(=O)C(CC1C=NC=N1)NC(=O)C1CCC(=O)N1[Si](C)(C)C2446.2Standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TMS,isomer #2C[Si](C)(C)OC(=O)C(CC1C=NC=N1)NC(=O)C1CCC(=O)N1[Si](C)(C)C4483.9Standard polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TMS,isomer #3C[Si](C)(C)N1C(=O)CCC1C(=O)N(C(CC1C=NC=N1)C(=O)O)[Si](C)(C)C2638.6Semi standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TMS,isomer #3C[Si](C)(C)N1C(=O)CCC1C(=O)N(C(CC1C=NC=N1)C(=O)O)[Si](C)(C)C2492.1Standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TMS,isomer #3C[Si](C)(C)N1C(=O)CCC1C(=O)N(C(CC1C=NC=N1)C(=O)O)[Si](C)(C)C4503.3Standard polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1[Si](C)(C)C)[Si](C)(C)C2624.7Semi standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1[Si](C)(C)C)[Si](C)(C)C2511.5Standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1[Si](C)(C)C)[Si](C)(C)C4322.5Standard polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1)[Si](C)(C)C(C)(C)C3168.2Semi standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1)[Si](C)(C)C(C)(C)C2895.0Standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1)[Si](C)(C)C(C)(C)C4770.8Standard polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C(CC1C=NC=N1)NC(=O)C1CCC(=O)N1[Si](C)(C)C(C)(C)C3135.8Semi standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C(CC1C=NC=N1)NC(=O)C1CCC(=O)N1[Si](C)(C)C(C)(C)C2889.8Standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C(CC1C=NC=N1)NC(=O)C1CCC(=O)N1[Si](C)(C)C(C)(C)C4645.8Standard polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C(=O)CCC1C(=O)N(C(CC1C=NC=N1)C(=O)O)[Si](C)(C)C(C)(C)C3097.6Semi standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C(=O)CCC1C(=O)N(C(CC1C=NC=N1)C(=O)O)[Si](C)(C)C(C)(C)C2915.2Standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C(=O)CCC1C(=O)N(C(CC1C=NC=N1)C(=O)O)[Si](C)(C)C(C)(C)C4647.2Standard polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3234.4Semi standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3125.9Standard non polar33892256
(2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C(CC1C=NC=N1)N(C(=O)C1CCC(=O)N1[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C4494.2Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-001i-9210000000-dc91629320d03d4292712021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S)-3-(4H-Imidazol-4-yl)-2-[[(2S)-5-oxopyrrolidine-2-carbonyl]amino]propanoic acid GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-25Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID10790158
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]