Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 18:11:58 UTC
Update Date2021-09-26 23:13:34 UTC
HMDB IDHMDB0257293
Secondary Accession NumbersNone
Metabolite Identification
Common NameRolapitant
Description8-({1-[3,5-bis(trifluoromethyl)phenyl]ethoxy}methyl)-8-phenyl-1,7-diazaspiro[4.5]dec-1-en-2-ol belongs to the class of organic compounds known as delta amino acids and derivatives. Delta amino acids and derivatives are compounds containing a carboxylic acid group and an amino group at the C5 carbon atom. Based on a literature review very few articles have been published on 8-({1-[3,5-bis(trifluoromethyl)phenyl]ethoxy}methyl)-8-phenyl-1,7-diazaspiro[4.5]dec-1-en-2-ol. This compound has been identified in human blood as reported by (PMID: 31557052 ). Rolapitant is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Rolapitant is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC25H26F6N2O2
Average Molecular Weight500.485
Monoisotopic Molecular Weight500.189847063
IUPAC Name8-({1-[3,5-bis(trifluoromethyl)phenyl]ethoxy}methyl)-8-phenyl-1,7-diazaspiro[4.5]decan-2-one
Traditional Name8-({1-[3,5-bis(trifluoromethyl)phenyl]ethoxy}methyl)-8-phenyl-1,7-diazaspiro[4.5]decan-2-one
CAS Registry NumberNot Available
SMILES
CC(OCC1(CCC2(CCC(=O)N2)CN1)C1=CC=CC=C1)C1=CC(=CC(=C1)C(F)(F)F)C(F)(F)F
InChI Identifier
InChI=1S/C25H26F6N2O2/c1-16(17-11-19(24(26,27)28)13-20(12-17)25(29,30)31)35-15-23(18-5-3-2-4-6-18)10-9-22(14-32-23)8-7-21(34)33-22/h2-6,11-13,16,32H,7-10,14-15H2,1H3,(H,33,34)
InChI KeyFIVSJYGQAIEMOC-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as delta amino acids and derivatives. Delta amino acids and derivatives are compounds containing a carboxylic acid group and an amino group at the C5 carbon atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentDelta amino acids and derivatives
Alternative Parents
Substituents
  • Delta amino acid or derivatives
  • Phenylpiperidine
  • Azaspirodecane
  • Trifluoromethylbenzene
  • Benzylether
  • Aralkylamine
  • Monocyclic benzene moiety
  • Piperidine
  • Benzenoid
  • Pyrrolidone
  • 2-pyrrolidone
  • Pyrrolidine
  • Carboxamide group
  • Lactam
  • Secondary carboxylic acid amide
  • Azacycle
  • Secondary amine
  • Organoheterocyclic compound
  • Dialkyl ether
  • Secondary aliphatic amine
  • Ether
  • Organooxygen compound
  • Alkyl halide
  • Organohalogen compound
  • Organofluoride
  • Hydrocarbon derivative
  • Alkyl fluoride
  • Carbonyl group
  • Organic oxide
  • Organic oxygen compound
  • Organic nitrogen compound
  • Organonitrogen compound
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.07ALOGPS
logP5ChemAxon
logS-5.5ALOGPS
pKa (Strongest Acidic)14.15ChemAxon
pKa (Strongest Basic)8.3ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area50.36 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity118.28 m³·mol⁻¹ChemAxon
Polarizability45.97 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+204.41230932474
DeepCCS[M-H]-202.01730932474
DeepCCS[M-2H]-234.90130932474
DeepCCS[M+Na]+210.32530932474
AllCCS[M+H]+212.932859911
AllCCS[M+H-H2O]+211.032859911
AllCCS[M+NH4]+214.632859911
AllCCS[M+Na]+215.132859911
AllCCS[M-H]-208.532859911
AllCCS[M+Na-2H]-208.932859911
AllCCS[M+HCOO]-209.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
RolapitantCC(OCC1(CCC2(CCC(=O)N2)CN1)C1=CC=CC=C1)C1=CC(=CC(=C1)C(F)(F)F)C(F)(F)F3028.5Standard polar33892256
RolapitantCC(OCC1(CCC2(CCC(=O)N2)CN1)C1=CC=CC=C1)C1=CC(=CC(=C1)C(F)(F)F)C(F)(F)F2957.9Standard non polar33892256
RolapitantCC(OCC1(CCC2(CCC(=O)N2)CN1)C1=CC=CC=C1)C1=CC(=CC(=C1)C(F)(F)F)C(F)(F)F2861.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Rolapitant,1TMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C)CN1)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C12810.0Semi standard non polar33892256
Rolapitant,1TMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C)CN1)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C12918.0Standard non polar33892256
Rolapitant,1TMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C)CN1)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13343.4Standard polar33892256
Rolapitant,1TMS,isomer #2CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2)CN1[Si](C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C12827.7Semi standard non polar33892256
Rolapitant,1TMS,isomer #2CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2)CN1[Si](C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C12853.0Standard non polar33892256
Rolapitant,1TMS,isomer #2CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2)CN1[Si](C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13298.4Standard polar33892256
Rolapitant,2TMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C)CN1[Si](C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C12832.0Semi standard non polar33892256
Rolapitant,2TMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C)CN1[Si](C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C12993.4Standard non polar33892256
Rolapitant,2TMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C)CN1[Si](C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13190.3Standard polar33892256
Rolapitant,1TBDMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C(C)(C)C)CN1)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13014.5Semi standard non polar33892256
Rolapitant,1TBDMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C(C)(C)C)CN1)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13142.7Standard non polar33892256
Rolapitant,1TBDMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C(C)(C)C)CN1)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13376.3Standard polar33892256
Rolapitant,1TBDMS,isomer #2CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2)CN1[Si](C)(C)C(C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13026.9Semi standard non polar33892256
Rolapitant,1TBDMS,isomer #2CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2)CN1[Si](C)(C)C(C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13050.2Standard non polar33892256
Rolapitant,1TBDMS,isomer #2CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2)CN1[Si](C)(C)C(C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13354.5Standard polar33892256
Rolapitant,2TBDMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C(C)(C)C)CN1[Si](C)(C)C(C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13269.5Semi standard non polar33892256
Rolapitant,2TBDMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C(C)(C)C)CN1[Si](C)(C)C(C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13379.2Standard non polar33892256
Rolapitant,2TBDMS,isomer #1CC(OCC1(C2=CC=CC=C2)CCC2(CCC(=O)N2[Si](C)(C)C(C)(C)C)CN1[Si](C)(C)C(C)(C)C)C1=CC(C(F)(F)F)=CC(C(F)(F)F)=C13308.6Standard polar33892256
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID37995616
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44215723
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]