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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 18:12:25 UTC
Update Date2021-09-26 23:13:35 UTC
HMDB IDHMDB0257300
Secondary Accession NumbersNone
Metabolite Identification
Common NameRonacaleret
Description3-[3-(3-{[1-(2,3-dihydro-1H-inden-2-yl)-2-methylpropan-2-yl]amino}-2-hydroxypropoxy)-4,5-difluorophenyl]propanoic acid belongs to the class of organic compounds known as phenylpropanoic acids. Phenylpropanoic acids are compounds with a structure containing a benzene ring conjugated to a propanoic acid. Based on a literature review very few articles have been published on 3-[3-(3-{[1-(2,3-dihydro-1H-inden-2-yl)-2-methylpropan-2-yl]amino}-2-hydroxypropoxy)-4,5-difluorophenyl]propanoic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). Ronacaleret is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Ronacaleret is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
3-[3-(3-{[1-(2,3-dihydro-1H-inden-2-yl)-2-methylpropan-2-yl]amino}-2-hydroxypropoxy)-4,5-difluorophenyl]propanoateGenerator
Chemical FormulaC25H31F2NO4
Average Molecular Weight447.523
Monoisotopic Molecular Weight447.222114808
IUPAC Name3-[3-(3-{[1-(2,3-dihydro-1H-inden-2-yl)-2-methylpropan-2-yl]amino}-2-hydroxypropoxy)-4,5-difluorophenyl]propanoic acid
Traditional Name3-[3-(3-{[1-(2,3-dihydro-1H-inden-2-yl)-2-methylpropan-2-yl]amino}-2-hydroxypropoxy)-4,5-difluorophenyl]propanoic acid
CAS Registry NumberNot Available
SMILES
CC(C)(CC1CC2=CC=CC=C2C1)NCC(O)COC1=C(F)C(F)=CC(CCC(O)=O)=C1
InChI Identifier
InChI=1S/C25H31F2NO4/c1-25(2,13-17-9-18-5-3-4-6-19(18)10-17)28-14-20(29)15-32-22-12-16(7-8-23(30)31)11-21(26)24(22)27/h3-6,11-12,17,20,28-29H,7-10,13-15H2,1-2H3,(H,30,31)
InChI KeyFQJISUPNMFRIFZ-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenylpropanoic acids. Phenylpropanoic acids are compounds with a structure containing a benzene ring conjugated to a propanoic acid.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassPhenylpropanoic acids
Sub ClassNot Available
Direct ParentPhenylpropanoic acids
Alternative Parents
Substituents
  • 3-phenylpropanoic-acid
  • Indane
  • Phenoxy compound
  • Phenol ether
  • Alkyl aryl ether
  • Aralkylamine
  • Fluorobenzene
  • Halobenzene
  • Aryl fluoride
  • Benzenoid
  • Aryl halide
  • Monocyclic benzene moiety
  • 1,2-aminoalcohol
  • Amino acid or derivatives
  • Amino acid
  • Secondary alcohol
  • Secondary amine
  • Carboxylic acid derivative
  • Carboxylic acid
  • Secondary aliphatic amine
  • Ether
  • Monocarboxylic acid or derivatives
  • Organic oxygen compound
  • Alcohol
  • Carbonyl group
  • Organooxygen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Amine
  • Organic oxide
  • Organonitrogen compound
  • Organofluoride
  • Organohalogen compound
  • Aromatic homopolycyclic compound
Molecular FrameworkAromatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.37ALOGPS
logP2.21ChemAxon
logS-5.5ALOGPS
pKa (Strongest Acidic)3.23ChemAxon
pKa (Strongest Basic)9.96ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area78.79 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity118.36 m³·mol⁻¹ChemAxon
Polarizability47.59 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+206.69130932474
DeepCCS[M-H]-204.33330932474
DeepCCS[M-2H]-237.96630932474
DeepCCS[M+Na]+213.19430932474
AllCCS[M+H]+209.732859911
AllCCS[M+H-H2O]+207.832859911
AllCCS[M+NH4]+211.532859911
AllCCS[M+Na]+212.032859911
AllCCS[M-H]-202.732859911
AllCCS[M+Na-2H]-203.432859911
AllCCS[M+HCOO]-204.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
RonacaleretCC(C)(CC1CC2=CC=CC=C2C1)NCC(O)COC1=C(F)C(F)=CC(CCC(O)=O)=C14387.9Standard polar33892256
RonacaleretCC(C)(CC1CC2=CC=CC=C2C1)NCC(O)COC1=C(F)C(F)=CC(CCC(O)=O)=C13215.0Standard non polar33892256
RonacaleretCC(C)(CC1CC2=CC=CC=C2C1)NCC(O)COC1=C(F)C(F)=CC(CCC(O)=O)=C13240.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Ronacaleret,3TMS,isomer #1CC(C)(CC1CC2=CC=CC=C2C1)N(CC(COC1=CC(CCC(=O)O[Si](C)(C)C)=CC(F)=C1F)O[Si](C)(C)C)[Si](C)(C)C3384.9Semi standard non polar33892256
Ronacaleret,3TMS,isomer #1CC(C)(CC1CC2=CC=CC=C2C1)N(CC(COC1=CC(CCC(=O)O[Si](C)(C)C)=CC(F)=C1F)O[Si](C)(C)C)[Si](C)(C)C3203.3Standard non polar33892256
Ronacaleret,3TMS,isomer #1CC(C)(CC1CC2=CC=CC=C2C1)N(CC(COC1=CC(CCC(=O)O[Si](C)(C)C)=CC(F)=C1F)O[Si](C)(C)C)[Si](C)(C)C3496.8Standard polar33892256
Ronacaleret,3TBDMS,isomer #1CC(C)(CC1CC2=CC=CC=C2C1)N(CC(COC1=CC(CCC(=O)O[Si](C)(C)C(C)(C)C)=CC(F)=C1F)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C4044.2Semi standard non polar33892256
Ronacaleret,3TBDMS,isomer #1CC(C)(CC1CC2=CC=CC=C2C1)N(CC(COC1=CC(CCC(=O)O[Si](C)(C)C(C)(C)C)=CC(F)=C1F)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3736.9Standard non polar33892256
Ronacaleret,3TBDMS,isomer #1CC(C)(CC1CC2=CC=CC=C2C1)N(CC(COC1=CC(CCC(=O)O[Si](C)(C)C(C)(C)C)=CC(F)=C1F)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3672.9Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (Non-derivatized) - 70eV, Positivesplash10-0uxr-3593100000-188fec04970b354c45702021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TMS_2_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TMS_2_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TBDMS_2_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ronacaleret GC-MS (TBDMS_2_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID64881680
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound46184239
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]