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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 18:38:59 UTC

Update Date

2021-09-26 23:14:06 UTC

HMDB ID

HMDB0257623

Secondary Accession Numbers

None

Metabolite Identification

Common Name

18-Hydroxyeicosapentaenoic acid

Description

18-hydroxyicosa-2,4,6,8,10-pentaenoic acid belongs to the class of organic compounds known as hydroxyeicosapentaenoic acids. These are eicosanoic acids with an attached hydroxyl group and five CC double bonds. Based on a literature review very few articles have been published on 18-hydroxyicosa-2,4,6,8,10-pentaenoic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). 18-hydroxyeicosapentaenoic acid is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 18-Hydroxyeicosapentaenoic acid is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0257623
     RDKit          3D
18-Hydroxyeicosapentaenoic acid
 53 52  0  0  0  0  0  0  0  0999 V2000
   -7.1085   -1.2558    1.5329 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8619   -0.4722    1.8842 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0700    0.9501    1.5046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1625    1.4552    2.2274 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9001    1.8641    1.7300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6768    1.3987    0.9570 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9759    1.2858   -0.4984 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7940    0.8198   -1.3355 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2536   -0.4811   -0.8195 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1599   -0.9971   -1.6960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0903   -0.0484   -1.9034 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1650   -0.1361   -1.5544 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6796   -1.2833   -0.8452 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9568   -1.3887   -0.5069 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9046   -0.3638   -0.8413 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1636   -0.4699   -0.4908 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7226   -1.5561    0.2388 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0611   -1.5553    0.5131 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8104   -0.4765    0.0453 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4825    0.4910   -0.3742 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8880    0.8069   -0.2776 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6726    0.0302    0.3093 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4142    1.9602   -0.8159 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8428   -2.1506    0.9091 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8311   -0.6091    0.9667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5719   -1.5979    2.4746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9988   -0.9448    1.3569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6699   -0.6355    2.9854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4142    0.9763    0.4359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7176    0.6942    2.5235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1606    2.8660    1.3414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6327    1.9600    2.7928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3177    0.4500    1.4152 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8820    2.1481    1.1198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3399    2.2783   -0.8466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8032    0.5746   -0.6977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1314    0.7515   -2.3819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9702    1.5774   -1.3161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0677   -1.2402   -0.6902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8926   -0.3000    0.2246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6439   -1.2024   -2.6977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8118   -1.9994   -1.3430 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3845    0.8909   -2.4345 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8157    0.6796   -1.8112 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0022   -2.1118   -0.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2537   -2.2906    0.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5832    0.5224   -1.4097 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8081    0.3546   -0.7965 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1746   -2.3991    0.5907 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3748   -2.4123    1.0718 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9802   -1.0641    0.5272 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9014    1.2980   -0.9519 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3232    2.0834   -1.8340 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  3
 12 13  1  0
 13 14  2  3
 14 15  1  0
 15 16  2  3
 16 17  1  0
 17 18  2  3
 18 19  1  0
 19 20  2  3
 20 21  1  0
 21 22  2  0
 21 23  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  2 27  1  0
  2 28  1  0
  3 29  1  0
  4 30  1  0
  5 31  1  0
  5 32  1  0
  6 33  1  0
  6 34  1  0
  7 35  1  0
  7 36  1  0
  8 37  1  0
  8 38  1  0
  9 39  1  0
  9 40  1  0
 10 41  1  0
 10 42  1  0
 11 43  1  0
 12 44  1  0
 13 45  1  0
 14 46  1  0
 15 47  1  0
 16 48  1  0
 17 49  1  0
 18 50  1  0
 19 51  1  0
 20 52  1  0
 23 53  1  0
M  END


  Mrv1652309112120392D          

 23 22  0  0  0  0            999 V2000
    2.2836    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4283    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1427    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8572    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5717    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2862    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0006    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7151    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4296    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1440    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8585    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8585    3.3809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.5730    2.1434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  4  0  0  0
 10 11  2  0  0  0  0
 12 11  1  4  0  0  0
 12 13  2  0  0  0  0
 14 13  1  4  0  0  0
 14 15  2  0  0  0  0
 16 15  1  4  0  0  0
 16 17  2  0  0  0  0
 18 17  1  4  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
  3 23  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0257623

> <DATABASE_NAME>
hmdb

> <SMILES>
CCC(O)CCCCCCC=CC=CC=CC=CC=CC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H30O3/c1-2-19(21)17-15-13-11-9-7-5-3-4-6-8-10-12-14-16-18-20(22)23/h3-6,8,10,12,14,16,18-19,21H,2,7,9,11,13,15,17H2,1H3,(H,22,23)

> <INCHI_KEY>
IVVBLUGHDNNLFF-UHFFFAOYSA-N

> <FORMULA>
C20H30O3

> <MOLECULAR_WEIGHT>
318.457

> <EXACT_MASS>
318.219494826

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
40.24963224573891

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
18-hydroxyicosa-2,4,6,8,10-pentaenoic acid

> <ALOGPS_LOGP>
6.09

> <JCHEM_LOGP>
5.1982757736666665

> <ALOGPS_LOGS>
-5.56

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
18.251219554463606

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.884221494809496

> <JCHEM_PKA_STRONGEST_BASIC>
-1.376716805025306

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
102.71679999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.78e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
18-hydroxyicosa-2,4,6,8,10-pentaenoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0257623
     RDKit          3D
18-Hydroxyeicosapentaenoic acid
 53 52  0  0  0  0  0  0  0  0999 V2000
   -7.1085   -1.2558    1.5329 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8619   -0.4722    1.8842 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0700    0.9501    1.5046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1625    1.4552    2.2274 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9001    1.8641    1.7300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6768    1.3987    0.9570 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9759    1.2858   -0.4984 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7940    0.8198   -1.3355 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2536   -0.4811   -0.8195 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1599   -0.9971   -1.6960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0903   -0.0484   -1.9034 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1650   -0.1361   -1.5544 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6796   -1.2833   -0.8452 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9568   -1.3887   -0.5069 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9046   -0.3638   -0.8413 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1636   -0.4699   -0.4908 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7226   -1.5561    0.2388 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0611   -1.5553    0.5131 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8104   -0.4765    0.0453 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4825    0.4910   -0.3742 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8880    0.8069   -0.2776 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6726    0.0302    0.3093 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4142    1.9602   -0.8159 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8428   -2.1506    0.9091 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8311   -0.6091    0.9667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5719   -1.5979    2.4746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9988   -0.9448    1.3569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6699   -0.6355    2.9854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4142    0.9763    0.4359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7176    0.6942    2.5235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1606    2.8660    1.3414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6327    1.9600    2.7928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3177    0.4500    1.4152 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8820    2.1481    1.1198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3399    2.2783   -0.8466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8032    0.5746   -0.6977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1314    0.7515   -2.3819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9702    1.5774   -1.3161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0677   -1.2402   -0.6902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8926   -0.3000    0.2246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6439   -1.2024   -2.6977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8118   -1.9994   -1.3430 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3845    0.8909   -2.4345 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8157    0.6796   -1.8112 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0022   -2.1118   -0.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2537   -2.2906    0.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5832    0.5224   -1.4097 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8081    0.3546   -0.7965 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1746   -2.3991    0.5907 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3748   -2.4123    1.0718 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9802   -1.0641    0.5272 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9014    1.2980   -0.9519 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3232    2.0834   -1.8340 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  3
 12 13  1  0
 13 14  2  3
 14 15  1  0
 15 16  2  3
 16 17  1  0
 17 18  2  3
 18 19  1  0
 19 20  2  3
 20 21  1  0
 21 22  2  0
 21 23  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  2 27  1  0
  2 28  1  0
  3 29  1  0
  4 30  1  0
  5 31  1  0
  5 32  1  0
  6 33  1  0
  6 34  1  0
  7 35  1  0
  7 36  1  0
  8 37  1  0
  8 38  1  0
  9 39  1  0
  9 40  1  0
 10 41  1  0
 10 42  1  0
 11 43  1  0
 12 44  1  0
 13 45  1  0
 14 46  1  0
 15 47  1  0
 16 48  1  0
 17 49  1  0
 18 50  1  0
 19 51  1  0
 20 52  1  0
 23 53  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0       4.263   4.001   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.596   4.771   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.264   4.771   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.597   4.001   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.931   4.771   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.265   4.001   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.598   4.771   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      14.932   4.001   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      16.266   4.771   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      17.599   4.001   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      18.933   4.771   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      20.267   4.001   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      21.600   4.771   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      22.934   4.001   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      24.268   4.771   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      25.602   4.001   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      26.935   4.771   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      28.269   4.001   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      29.603   4.771   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      29.603   6.311   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      30.936   4.001   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       6.930   2.461   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   23                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23    3                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   44    0
END

COMPND    HMDB0257623
HETATM    1  C1  UNL     1      -7.108  -1.256   1.533  1.00  0.00           C  
HETATM    2  C2  UNL     1      -5.862  -0.472   1.884  1.00  0.00           C  
HETATM    3  C3  UNL     1      -6.070   0.950   1.505  1.00  0.00           C  
HETATM    4  O1  UNL     1      -7.163   1.455   2.227  1.00  0.00           O  
HETATM    5  C4  UNL     1      -4.900   1.864   1.730  1.00  0.00           C  
HETATM    6  C5  UNL     1      -3.677   1.399   0.957  1.00  0.00           C  
HETATM    7  C6  UNL     1      -3.976   1.286  -0.498  1.00  0.00           C  
HETATM    8  C7  UNL     1      -2.794   0.820  -1.336  1.00  0.00           C  
HETATM    9  C8  UNL     1      -2.254  -0.481  -0.819  1.00  0.00           C  
HETATM   10  C9  UNL     1      -1.160  -0.997  -1.696  1.00  0.00           C  
HETATM   11  C10 UNL     1      -0.090  -0.048  -1.903  1.00  0.00           C  
HETATM   12  C11 UNL     1       1.165  -0.136  -1.554  1.00  0.00           C  
HETATM   13  C12 UNL     1       1.680  -1.283  -0.845  1.00  0.00           C  
HETATM   14  C13 UNL     1       2.957  -1.389  -0.507  1.00  0.00           C  
HETATM   15  C14 UNL     1       3.905  -0.364  -0.841  1.00  0.00           C  
HETATM   16  C15 UNL     1       5.164  -0.470  -0.491  1.00  0.00           C  
HETATM   17  C16 UNL     1       5.723  -1.556   0.239  1.00  0.00           C  
HETATM   18  C17 UNL     1       7.061  -1.555   0.513  1.00  0.00           C  
HETATM   19  C18 UNL     1       7.810  -0.477   0.045  1.00  0.00           C  
HETATM   20  C19 UNL     1       8.482   0.491  -0.374  1.00  0.00           C  
HETATM   21  C20 UNL     1       9.888   0.807  -0.278  1.00  0.00           C  
HETATM   22  O2  UNL     1      10.673   0.030   0.309  1.00  0.00           O  
HETATM   23  O3  UNL     1      10.414   1.960  -0.816  1.00  0.00           O  
HETATM   24  H1  UNL     1      -6.843  -2.151   0.909  1.00  0.00           H  
HETATM   25  H2  UNL     1      -7.831  -0.609   0.967  1.00  0.00           H  
HETATM   26  H3  UNL     1      -7.572  -1.598   2.475  1.00  0.00           H  
HETATM   27  H4  UNL     1      -4.999  -0.945   1.357  1.00  0.00           H  
HETATM   28  H5  UNL     1      -5.670  -0.635   2.985  1.00  0.00           H  
HETATM   29  H6  UNL     1      -6.414   0.976   0.436  1.00  0.00           H  
HETATM   30  H7  UNL     1      -7.718   0.694   2.523  1.00  0.00           H  
HETATM   31  H8  UNL     1      -5.161   2.866   1.341  1.00  0.00           H  
HETATM   32  H9  UNL     1      -4.633   1.960   2.793  1.00  0.00           H  
HETATM   33  H10 UNL     1      -3.318   0.450   1.415  1.00  0.00           H  
HETATM   34  H11 UNL     1      -2.882   2.148   1.120  1.00  0.00           H  
HETATM   35  H12 UNL     1      -4.340   2.278  -0.847  1.00  0.00           H  
HETATM   36  H13 UNL     1      -4.803   0.575  -0.698  1.00  0.00           H  
HETATM   37  H14 UNL     1      -3.131   0.752  -2.382  1.00  0.00           H  
HETATM   38  H15 UNL     1      -1.970   1.577  -1.316  1.00  0.00           H  
HETATM   39  H16 UNL     1      -3.068  -1.240  -0.690  1.00  0.00           H  
HETATM   40  H17 UNL     1      -1.893  -0.300   0.225  1.00  0.00           H  
HETATM   41  H18 UNL     1      -1.644  -1.202  -2.698  1.00  0.00           H  
HETATM   42  H19 UNL     1      -0.812  -1.999  -1.343  1.00  0.00           H  
HETATM   43  H20 UNL     1      -0.384   0.891  -2.434  1.00  0.00           H  
HETATM   44  H21 UNL     1       1.816   0.680  -1.811  1.00  0.00           H  
HETATM   45  H22 UNL     1       1.002  -2.112  -0.557  1.00  0.00           H  
HETATM   46  H23 UNL     1       3.254  -2.291   0.049  1.00  0.00           H  
HETATM   47  H24 UNL     1       3.583   0.522  -1.410  1.00  0.00           H  
HETATM   48  H25 UNL     1       5.808   0.355  -0.796  1.00  0.00           H  
HETATM   49  H26 UNL     1       5.175  -2.399   0.591  1.00  0.00           H  
HETATM   50  H27 UNL     1       7.375  -2.412   1.072  1.00  0.00           H  
HETATM   51  H28 UNL     1       8.980  -1.064   0.527  1.00  0.00           H  
HETATM   52  H29 UNL     1       7.901   1.298  -0.952  1.00  0.00           H  
HETATM   53  H30 UNL     1      10.323   2.083  -1.834  1.00  0.00           H  
CONECT    1    2   24   25   26
CONECT    2    3   27   28
CONECT    3    4    5   29
CONECT    4   30
CONECT    5    6   31   32
CONECT    6    7   33   34
CONECT    7    8   35   36
CONECT    8    9   37   38
CONECT    9   10   39   40
CONECT   10   11   41   42
CONECT   11   12   12   43
CONECT   12   13   44
CONECT   13   14   14   45
CONECT   14   15   46
CONECT   15   16   16   47
CONECT   16   17   48
CONECT   17   18   18   49
CONECT   18   19   50
CONECT   19   20   20   51
CONECT   20   21   52
CONECT   21   22   22   23
CONECT   23   53
END

HMDB0257623
     RDKit          3D
18-Hydroxyeicosapentaenoic acid
 53 52  0  0  0  0  0  0  0  0999 V2000
   -7.1085   -1.2558    1.5329 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8619   -0.4722    1.8842 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0700    0.9501    1.5046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1625    1.4552    2.2274 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9001    1.8641    1.7300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6768    1.3987    0.9570 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9759    1.2858   -0.4984 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7940    0.8198   -1.3355 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2536   -0.4811   -0.8195 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1599   -0.9971   -1.6960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0903   -0.0484   -1.9034 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1650   -0.1361   -1.5544 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6796   -1.2833   -0.8452 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9568   -1.3887   -0.5069 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9046   -0.3638   -0.8413 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1636   -0.4699   -0.4908 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7226   -1.5561    0.2388 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0611   -1.5553    0.5131 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8104   -0.4765    0.0453 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4825    0.4910   -0.3742 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8880    0.8069   -0.2776 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6726    0.0302    0.3093 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4142    1.9602   -0.8159 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8428   -2.1506    0.9091 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8311   -0.6091    0.9667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5719   -1.5979    2.4746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9988   -0.9448    1.3569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6699   -0.6355    2.9854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4142    0.9763    0.4359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7176    0.6942    2.5235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1606    2.8660    1.3414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6327    1.9600    2.7928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3177    0.4500    1.4152 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8820    2.1481    1.1198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3399    2.2783   -0.8466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8032    0.5746   -0.6977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1314    0.7515   -2.3819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9702    1.5774   -1.3161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0677   -1.2402   -0.6902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8926   -0.3000    0.2246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6439   -1.2024   -2.6977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8118   -1.9994   -1.3430 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3845    0.8909   -2.4345 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8157    0.6796   -1.8112 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0022   -2.1118   -0.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2537   -2.2906    0.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5832    0.5224   -1.4097 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8081    0.3546   -0.7965 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1746   -2.3991    0.5907 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3748   -2.4123    1.0718 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9802   -1.0641    0.5272 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9014    1.2980   -0.9519 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3232    2.0834   -1.8340 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  3
 12 13  1  0
 13 14  2  3
 14 15  1  0
 15 16  2  3
 16 17  1  0
 17 18  2  3
 18 19  1  0
 19 20  2  3
 20 21  1  0
 21 22  2  0
 21 23  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  2 27  1  0
  2 28  1  0
  3 29  1  0
  4 30  1  0
  5 31  1  0
  5 32  1  0
  6 33  1  0
  6 34  1  0
  7 35  1  0
  7 36  1  0
  8 37  1  0
  8 38  1  0
  9 39  1  0
  9 40  1  0
 10 41  1  0
 10 42  1  0
 11 43  1  0
 12 44  1  0
 13 45  1  0
 14 46  1  0
 15 47  1  0
 16 48  1  0
 17 49  1  0
 18 50  1  0
 19 51  1  0
 20 52  1  0
 23 53  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
18-Hydroxyicosa-2,4,6,8,10-pentaenoate	Generator
18-Hydroxyeicosapentaenoate	Generator

Chemical Formula

C₂₀H₃₀O₃

Average Molecular Weight

318.457

Monoisotopic Molecular Weight

318.219494826

IUPAC Name

18-hydroxyicosa-2,4,6,8,10-pentaenoic acid

Traditional Name

18-hydroxyicosa-2,4,6,8,10-pentaenoic acid

CAS Registry Number

Not Available

SMILES

CCC(O)CCCCCCC=CC=CC=CC=CC=CC(O)=O

InChI Identifier

InChI=1S/C20H30O3/c1-2-19(21)17-15-13-11-9-7-5-3-4-6-8-10-12-14-16-18-20(22)23/h3-6,8,10,12,14,16,18-19,21H,2,7,9,11,13,15,17H2,1H3,(H,22,23)

InChI Key

IVVBLUGHDNNLFF-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxyeicosapentaenoic acids. These are eicosanoic acids with an attached hydroxyl group and five CC double bonds.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Hydroxyeicosapentaenoic acids

Alternative Parents

Substituents

Hydroxyeicosapentaenoic acid
Long-chain fatty acid
Hydroxy fatty acid
Fatty acid
Unsaturated fatty acid
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Organic oxide
Organic oxygen compound
Alcohol
Hydrocarbon derivative
Carbonyl group
Organooxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	6.09	ALOGPS
logP	5.2	ChemAxon
logS	-5.6	ALOGPS
pKa (Strongest Acidic)	4.88	ChemAxon
pKa (Strongest Basic)	-1.4	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	102.72 m³·mol⁻¹	ChemAxon
Polarizability	40.25 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	172.261	30932474
DeepCCS	[M-H]-	169.903	30932474
DeepCCS	[M-2H]-	202.979	30932474
DeepCCS	[M+Na]+	178.391	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
18-Hydroxyeicosapentaenoic acid	CCC(O)CCCCCCC=CC=CC=CC=CC=CC(O)=O	4421.4	Standard polar	33892256
18-Hydroxyeicosapentaenoic acid	CCC(O)CCCCCCC=CC=CC=CC=CC=CC(O)=O	2647.6	Standard non polar	33892256
18-Hydroxyeicosapentaenoic acid	CCC(O)CCCCCCC=CC=CC=CC=CC=CC(O)=O	2893.8	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 18-Hydroxyeicosapentaenoic acid GC-MS (Non-derivatized) - 70eV, Positive	splash10-0pdi-9352000000-3e066d99f5a4b2d0de4d	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 18-Hydroxyeicosapentaenoic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 18-Hydroxyeicosapentaenoic acid GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 18-Hydroxyeicosapentaenoic acid GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 18-Hydroxyeicosapentaenoic acid GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 18-Hydroxyeicosapentaenoic acid GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 18-Hydroxyeicosapentaenoic acid GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 18-Hydroxyeicosapentaenoic acid GC-MS (TBDMS_2_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

73866844

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for 18-Hydroxyeicosapentaenoic acid (HMDB0257623)

MOL for HMDB0257623 (18-Hydroxyeicosapentaenoic acid)

3D MOL for HMDB0257623 (18-Hydroxyeicosapentaenoic acid)

3D SDF for HMDB0257623 (18-Hydroxyeicosapentaenoic acid)

3D-SDF for HMDB0257623 (18-Hydroxyeicosapentaenoic acid)

PDB for HMDB0257623 (18-Hydroxyeicosapentaenoic acid)

3D PDB for HMDB0257623 (18-Hydroxyeicosapentaenoic acid)

SMILES for HMDB0257623 (18-Hydroxyeicosapentaenoic acid)

INCHI for HMDB0257623 (18-Hydroxyeicosapentaenoic acid)

Structure for HMDB0257623 (18-Hydroxyeicosapentaenoic acid)

3D Structure for HMDB0257623 (18-Hydroxyeicosapentaenoic acid)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra