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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 19:29:56 UTC
Update Date2021-09-26 23:15:00 UTC
HMDB IDHMDB0258234
Secondary Accession NumbersNone
Metabolite Identification
Common NameSenktide
Description3-[(3-carboxy-1-hydroxypropylidene)amino]-3-[(1-{[1-({[(1-{[1-(C-hydroxycarbonimidoyl)-3-(methylsulfanyl)propyl]-C-hydroxycarbonimidoyl}-3-methylbutyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)-2-phenylethyl](methyl)carbamoyl}-2-phenylethyl)-C-hydroxycarbonimidoyl]propanoic acid belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds. Based on a literature review very few articles have been published on 3-[(3-carboxy-1-hydroxypropylidene)amino]-3-[(1-{[1-({[(1-{[1-(C-hydroxycarbonimidoyl)-3-(methylsulfanyl)propyl]-C-hydroxycarbonimidoyl}-3-methylbutyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)-2-phenylethyl](methyl)carbamoyl}-2-phenylethyl)-C-hydroxycarbonimidoyl]propanoic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). Senktide is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Senktide is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
3-[(3-Carboxy-1-hydroxypropylidene)amino]-3-[(1-{[1-({[(1-{[1-(C-hydroxycarbonimidoyl)-3-(methylsulfanyl)propyl]-C-hydroxycarbonimidoyl}-3-methylbutyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)-2-phenylethyl](methyl)carbamoyl}-2-phenylethyl)-C-hydroxycarbonimidoyl]propanoateGenerator
3-[(3-Carboxy-1-hydroxypropylidene)amino]-3-[(1-{[1-({[(1-{[1-(C-hydroxycarbonimidoyl)-3-(methylsulphanyl)propyl]-C-hydroxycarbonimidoyl}-3-methylbutyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)-2-phenylethyl](methyl)carbamoyl}-2-phenylethyl)-C-hydroxycarbonimidoyl]propanoateGenerator
3-[(3-Carboxy-1-hydroxypropylidene)amino]-3-[(1-{[1-({[(1-{[1-(C-hydroxycarbonimidoyl)-3-(methylsulphanyl)propyl]-C-hydroxycarbonimidoyl}-3-methylbutyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)-2-phenylethyl](methyl)carbamoyl}-2-phenylethyl)-C-hydroxycarbonimidoyl]propanoic acidGenerator
Succinyl-6-asp-8-me-phe-substance p (6-11)MeSH
Chemical FormulaC40H55N7O11S
Average Molecular Weight841.98
Monoisotopic Molecular Weight841.368026793
IUPAC Name3-[(1-{[1-({[(1-{[1-carbamoyl-3-(methylsulfanyl)propyl]carbamoyl}-3-methylbutyl)carbamoyl]methyl}carbamoyl)-2-phenylethyl](methyl)carbamoyl}-2-phenylethyl)carbamoyl]-3-(3-carboxypropanamido)propanoic acid
Traditional Name3-[(1-{[1-({[(1-{[1-carbamoyl-3-(methylsulfanyl)propyl]carbamoyl}-3-methylbutyl)carbamoyl]methyl}carbamoyl)-2-phenylethyl](methyl)carbamoyl}-2-phenylethyl)carbamoyl]-3-(3-carboxypropanamido)propanoic acid
CAS Registry NumberNot Available
SMILES
CSCCC(NC(=O)C(CC(C)C)NC(=O)CNC(=O)C(CC1=CC=CC=C1)N(C)C(=O)C(CC1=CC=CC=C1)NC(=O)C(CC(O)=O)NC(=O)CCC(O)=O)C(N)=O
InChI Identifier
InChI=1S/C40H55N7O11S/c1-24(2)19-28(37(55)45-27(36(41)54)17-18-59-4)44-33(49)23-42-39(57)31(21-26-13-9-6-10-14-26)47(3)40(58)30(20-25-11-7-5-8-12-25)46-38(56)29(22-35(52)53)43-32(48)15-16-34(50)51/h5-14,24,27-31H,15-23H2,1-4H3,(H2,41,54)(H,42,57)(H,43,48)(H,44,49)(H,45,55)(H,46,56)(H,50,51)(H,52,53)
InChI KeyHMHYXLVEFVGOPM-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentOligopeptides
Alternative Parents
Substituents
  • Alpha-oligopeptide
  • Phenylalanine or derivatives
  • Methionine or derivatives
  • Aspartic acid or derivatives
  • Leucine or derivatives
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • Amphetamine or derivatives
  • Alpha-amino acid or derivatives
  • N-substituted-alpha-amino acid
  • N-acyl-amine
  • Fatty acyl
  • Monocyclic benzene moiety
  • Benzenoid
  • Dicarboxylic acid or derivatives
  • Fatty amide
  • Tertiary carboxylic acid amide
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Primary carboxylic acid amide
  • Thioether
  • Sulfenyl compound
  • Carboxylic acid
  • Dialkylthioether
  • Organic oxide
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Organooxygen compound
  • Organosulfur compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP0.95ALOGPS
logP-0.19ChemAxon
logS-5.2ALOGPS
pKa (Strongest Acidic)3.62ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area283.5 ŲChemAxon
Rotatable Bond Count26ChemAxon
Refractivity215.58 m³·mol⁻¹ChemAxon
Polarizability85.76 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+262.93430932474
DeepCCS[M-H]-261.10930932474
DeepCCS[M-2H]-294.77130932474
DeepCCS[M+Na]+268.54730932474
AllCCS[M+H]+289.632859911
AllCCS[M+H-H2O]+289.932859911
AllCCS[M+NH4]+289.332859911
AllCCS[M+Na]+289.332859911
AllCCS[M-H]-251.832859911
AllCCS[M+Na-2H]-256.832859911
AllCCS[M+HCOO]-262.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
SenktideCSCCC(NC(=O)C(CC(C)C)NC(=O)CNC(=O)C(CC1=CC=CC=C1)N(C)C(=O)C(CC1=CC=CC=C1)NC(=O)C(CC(O)=O)NC(=O)CCC(O)=O)C(N)=O6004.7Standard polar33892256
SenktideCSCCC(NC(=O)C(CC(C)C)NC(=O)CNC(=O)C(CC1=CC=CC=C1)N(C)C(=O)C(CC1=CC=CC=C1)NC(=O)C(CC(O)=O)NC(=O)CCC(O)=O)C(N)=O4297.0Standard non polar33892256
SenktideCSCCC(NC(=O)C(CC(C)C)NC(=O)CNC(=O)C(CC1=CC=CC=C1)N(C)C(=O)C(CC1=CC=CC=C1)NC(=O)C(CC(O)=O)NC(=O)CCC(O)=O)C(N)=O6560.2Semi standard non polar33892256
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID4255960
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5079497
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]