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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 20:55:27 UTC

Update Date

2021-09-26 23:16:18 UTC

HMDB ID

HMDB0259021

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Thiopalmitic Acid

Description

hexadecanethioic S-acid belongs to the class of organic compounds known as carbothioic s-acids. These are organic acids with the general formula RCS-OH (R=H, organic group). Based on a literature review very few articles have been published on hexadecanethioic S-acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). Thiopalmitic acid is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Thiopalmitic Acid is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0259021
     RDKit          3D
Thiopalmitic Acid
 50 49  0  0  0  0  0  0  0  0999 V2000
   -5.7597    0.8770    2.8785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1917    0.1350    1.7025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4632    1.0249    0.7246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9706    0.0872   -0.3864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2158    0.8253   -1.4510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7826   -0.1728   -2.4971 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9075   -1.2470   -1.9822 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6196   -0.7931   -1.3761 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2757   -0.0444   -2.2963 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5281    0.3404   -1.5376 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2842   -0.8385   -1.0031 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5169   -0.2399   -0.2709 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3382   -1.3294    0.3010 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5589   -0.8447    0.9956 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4062    0.0402    2.1717 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7673    1.3392    1.9774 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8587    1.6872    2.7212 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2599    2.4611    0.6827 S   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2721    0.0996    3.5084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5540    1.5654    2.5429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9915    1.3390    3.4983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0084   -0.3824    1.1574 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4704   -0.6398    2.0273 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0733    1.8444    0.3339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5934    1.4947    1.2449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8766   -0.4046   -0.7912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3116   -0.6451    0.1656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9122    1.5642   -1.8954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3226    1.3180   -1.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7293   -0.6281   -2.8955 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3609    0.4082   -3.3370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6887   -1.9837   -2.8101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4513   -1.8466   -1.2252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0698   -1.7321   -1.0684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7812   -0.2002   -0.4608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1970    0.9388   -2.5829 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5101   -0.6320   -3.2104 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2095    0.9599   -0.6688 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1466    1.0081   -2.1645 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6269   -1.5521   -1.7457 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7100   -1.3220   -0.1864 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0509    0.3361   -1.0370 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0958    0.4026    0.5239 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6475   -2.0612   -0.5106 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6806   -1.9451    0.9882 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2434   -0.3599    0.2425 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1287   -1.7769    1.3009 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8845   -0.5735    2.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4419    0.1983    2.5927 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4047    1.9005    0.0520 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  0
  2 23  1  0
  3 24  1  0
  3 25  1  0
  4 26  1  0
  4 27  1  0
  5 28  1  0
  5 29  1  0
  6 30  1  0
  6 31  1  0
  7 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
  9 36  1  0
  9 37  1  0
 10 38  1  0
 10 39  1  0
 11 40  1  0
 11 41  1  0
 12 42  1  0
 12 43  1  0
 13 44  1  0
 13 45  1  0
 14 46  1  0
 14 47  1  0
 15 48  1  0
 15 49  1  0
 18 50  1  0
M  END


  Mrv1533004241522042D          

 18 17  0  0  0  0            999 V2000
    7.9480    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6625    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3770    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0914    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8059    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5204    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2349    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9493    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.6638    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3783    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0927    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8072    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.5217    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.2362    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9506    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6651    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.3796    5.4138    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.6651    4.1763    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0259021

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCCCCCCC(S)=O

> <INCHI_IDENTIFIER>
InChI=1S/C16H32OS/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16(17)18/h2-15H2,1H3,(H,17,18)

> <INCHI_KEY>
KPUXJBYSYFEKKB-UHFFFAOYSA-N

> <FORMULA>
C16H32OS

> <MOLECULAR_WEIGHT>
272.49

> <EXACT_MASS>
272.217386824

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
36.254811117334555

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
hexadecanethioic S-acid

> <ALOGPS_LOGP>
7.49

> <JCHEM_LOGP>
6.770097130666667

> <ALOGPS_LOGS>
-6.27

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.6042454181558994

> <JCHEM_POLAR_SURFACE_AREA>
17.07

> <JCHEM_REFRACTIVITY>
83.4974

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.46e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
hexadecanethioic S-acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0259021
     RDKit          3D
Thiopalmitic Acid
 50 49  0  0  0  0  0  0  0  0999 V2000
   -5.7597    0.8770    2.8785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1917    0.1350    1.7025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4632    1.0249    0.7246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9706    0.0872   -0.3864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2158    0.8253   -1.4510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7826   -0.1728   -2.4971 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9075   -1.2470   -1.9822 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6196   -0.7931   -1.3761 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2757   -0.0444   -2.2963 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5281    0.3404   -1.5376 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2842   -0.8385   -1.0031 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5169   -0.2399   -0.2709 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3382   -1.3294    0.3010 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5589   -0.8447    0.9956 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4062    0.0402    2.1717 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7673    1.3392    1.9774 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8587    1.6872    2.7212 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2599    2.4611    0.6827 S   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2721    0.0996    3.5084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5540    1.5654    2.5429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9915    1.3390    3.4983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0084   -0.3824    1.1574 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4704   -0.6398    2.0273 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0733    1.8444    0.3339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5934    1.4947    1.2449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8766   -0.4046   -0.7912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3116   -0.6451    0.1656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9122    1.5642   -1.8954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3226    1.3180   -1.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7293   -0.6281   -2.8955 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3609    0.4082   -3.3370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6887   -1.9837   -2.8101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4513   -1.8466   -1.2252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0698   -1.7321   -1.0684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7812   -0.2002   -0.4608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1970    0.9388   -2.5829 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5101   -0.6320   -3.2104 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2095    0.9599   -0.6688 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1466    1.0081   -2.1645 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6269   -1.5521   -1.7457 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7100   -1.3220   -0.1864 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0509    0.3361   -1.0370 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0958    0.4026    0.5239 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6475   -2.0612   -0.5106 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6806   -1.9451    0.9882 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2434   -0.3599    0.2425 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1287   -1.7769    1.3009 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8845   -0.5735    2.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4419    0.1983    2.5927 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4047    1.9005    0.0520 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  0
  2 23  1  0
  3 24  1  0
  3 25  1  0
  4 26  1  0
  4 27  1  0
  5 28  1  0
  5 29  1  0
  6 30  1  0
  6 31  1  0
  7 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
  9 36  1  0
  9 37  1  0
 10 38  1  0
 10 39  1  0
 11 40  1  0
 11 41  1  0
 12 42  1  0
 12 43  1  0
 13 44  1  0
 13 45  1  0
 14 46  1  0
 14 47  1  0
 15 48  1  0
 15 49  1  0
 18 50  1  0
M  END

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0      14.836  10.106   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      16.170   9.336   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      17.504  10.106   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      18.837   9.336   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      20.171  10.106   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      21.505   9.336   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      22.838  10.106   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      24.172   9.336   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      25.506  10.106   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      26.839   9.336   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      28.173  10.106   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      29.507   9.336   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      30.840  10.106   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      32.174   9.336   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      33.508  10.106   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      34.842   9.336   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      36.175  10.106   0.000  0.00  0.00           O+0
HETATM   18  S   UNK     0      34.842   7.796   0.000  0.00  0.00           S+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   34    0
END

COMPND    HMDB0259021
HETATM    1  C1  UNL     1      -5.760   0.877   2.879  1.00  0.00           C  
HETATM    2  C2  UNL     1      -5.192   0.135   1.702  1.00  0.00           C  
HETATM    3  C3  UNL     1      -4.463   1.025   0.725  1.00  0.00           C  
HETATM    4  C4  UNL     1      -3.971   0.087  -0.386  1.00  0.00           C  
HETATM    5  C5  UNL     1      -3.216   0.825  -1.451  1.00  0.00           C  
HETATM    6  C6  UNL     1      -2.783  -0.173  -2.497  1.00  0.00           C  
HETATM    7  C7  UNL     1      -1.907  -1.247  -1.982  1.00  0.00           C  
HETATM    8  C8  UNL     1      -0.620  -0.793  -1.376  1.00  0.00           C  
HETATM    9  C9  UNL     1       0.276  -0.044  -2.296  1.00  0.00           C  
HETATM   10  C10 UNL     1       1.528   0.340  -1.538  1.00  0.00           C  
HETATM   11  C11 UNL     1       2.284  -0.839  -1.003  1.00  0.00           C  
HETATM   12  C12 UNL     1       3.517  -0.240  -0.271  1.00  0.00           C  
HETATM   13  C13 UNL     1       4.338  -1.329   0.301  1.00  0.00           C  
HETATM   14  C14 UNL     1       5.559  -0.845   0.996  1.00  0.00           C  
HETATM   15  C15 UNL     1       5.406   0.040   2.172  1.00  0.00           C  
HETATM   16  C16 UNL     1       4.767   1.339   1.977  1.00  0.00           C  
HETATM   17  O1  UNL     1       3.859   1.687   2.721  1.00  0.00           O  
HETATM   18  S1  UNL     1       5.260   2.461   0.683  1.00  0.00           S  
HETATM   19  H1  UNL     1      -6.272   0.100   3.508  1.00  0.00           H  
HETATM   20  H2  UNL     1      -6.554   1.565   2.543  1.00  0.00           H  
HETATM   21  H3  UNL     1      -4.992   1.339   3.498  1.00  0.00           H  
HETATM   22  H4  UNL     1      -6.008  -0.382   1.157  1.00  0.00           H  
HETATM   23  H5  UNL     1      -4.470  -0.640   2.027  1.00  0.00           H  
HETATM   24  H6  UNL     1      -5.073   1.844   0.334  1.00  0.00           H  
HETATM   25  H7  UNL     1      -3.593   1.495   1.245  1.00  0.00           H  
HETATM   26  H8  UNL     1      -4.877  -0.405  -0.791  1.00  0.00           H  
HETATM   27  H9  UNL     1      -3.312  -0.645   0.166  1.00  0.00           H  
HETATM   28  H10 UNL     1      -3.912   1.564  -1.895  1.00  0.00           H  
HETATM   29  H11 UNL     1      -2.323   1.318  -1.023  1.00  0.00           H  
HETATM   30  H12 UNL     1      -3.729  -0.628  -2.895  1.00  0.00           H  
HETATM   31  H13 UNL     1      -2.361   0.408  -3.337  1.00  0.00           H  
HETATM   32  H14 UNL     1      -1.689  -1.984  -2.810  1.00  0.00           H  
HETATM   33  H15 UNL     1      -2.451  -1.847  -1.225  1.00  0.00           H  
HETATM   34  H16 UNL     1      -0.070  -1.732  -1.068  1.00  0.00           H  
HETATM   35  H17 UNL     1      -0.781  -0.200  -0.461  1.00  0.00           H  
HETATM   36  H18 UNL     1      -0.197   0.939  -2.583  1.00  0.00           H  
HETATM   37  H19 UNL     1       0.510  -0.632  -3.210  1.00  0.00           H  
HETATM   38  H20 UNL     1       1.209   0.960  -0.669  1.00  0.00           H  
HETATM   39  H21 UNL     1       2.147   1.008  -2.165  1.00  0.00           H  
HETATM   40  H22 UNL     1       2.627  -1.552  -1.746  1.00  0.00           H  
HETATM   41  H23 UNL     1       1.710  -1.322  -0.186  1.00  0.00           H  
HETATM   42  H24 UNL     1       4.051   0.336  -1.037  1.00  0.00           H  
HETATM   43  H25 UNL     1       3.096   0.403   0.524  1.00  0.00           H  
HETATM   44  H26 UNL     1       4.648  -2.061  -0.511  1.00  0.00           H  
HETATM   45  H27 UNL     1       3.681  -1.945   0.988  1.00  0.00           H  
HETATM   46  H28 UNL     1       6.243  -0.360   0.243  1.00  0.00           H  
HETATM   47  H29 UNL     1       6.129  -1.777   1.301  1.00  0.00           H  
HETATM   48  H30 UNL     1       4.884  -0.574   2.961  1.00  0.00           H  
HETATM   49  H31 UNL     1       6.442   0.198   2.593  1.00  0.00           H  
HETATM   50  H32 UNL     1       6.405   1.900   0.052  1.00  0.00           H  
CONECT    1    2   19   20   21
CONECT    2    3   22   23
CONECT    3    4   24   25
CONECT    4    5   26   27
CONECT    5    6   28   29
CONECT    6    7   30   31
CONECT    7    8   32   33
CONECT    8    9   34   35
CONECT    9   10   36   37
CONECT   10   11   38   39
CONECT   11   12   40   41
CONECT   12   13   42   43
CONECT   13   14   44   45
CONECT   14   15   46   47
CONECT   15   16   48   49
CONECT   16   17   17   18
CONECT   18   50
END

HMDB0259021
     RDKit          3D
Thiopalmitic Acid
 50 49  0  0  0  0  0  0  0  0999 V2000
   -5.7597    0.8770    2.8785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1917    0.1350    1.7025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4632    1.0249    0.7246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9706    0.0872   -0.3864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2158    0.8253   -1.4510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7826   -0.1728   -2.4971 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9075   -1.2470   -1.9822 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6196   -0.7931   -1.3761 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2757   -0.0444   -2.2963 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5281    0.3404   -1.5376 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2842   -0.8385   -1.0031 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5169   -0.2399   -0.2709 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3382   -1.3294    0.3010 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5589   -0.8447    0.9956 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4062    0.0402    2.1717 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7673    1.3392    1.9774 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8587    1.6872    2.7212 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2599    2.4611    0.6827 S   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2721    0.0996    3.5084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5540    1.5654    2.5429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9915    1.3390    3.4983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0084   -0.3824    1.1574 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4704   -0.6398    2.0273 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0733    1.8444    0.3339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5934    1.4947    1.2449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8766   -0.4046   -0.7912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3116   -0.6451    0.1656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9122    1.5642   -1.8954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3226    1.3180   -1.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7293   -0.6281   -2.8955 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3609    0.4082   -3.3370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6887   -1.9837   -2.8101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4513   -1.8466   -1.2252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0698   -1.7321   -1.0684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7812   -0.2002   -0.4608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1970    0.9388   -2.5829 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5101   -0.6320   -3.2104 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2095    0.9599   -0.6688 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1466    1.0081   -2.1645 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6269   -1.5521   -1.7457 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7100   -1.3220   -0.1864 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0509    0.3361   -1.0370 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0958    0.4026    0.5239 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6475   -2.0612   -0.5106 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6806   -1.9451    0.9882 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2434   -0.3599    0.2425 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1287   -1.7769    1.3009 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8845   -0.5735    2.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4419    0.1983    2.5927 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4047    1.9005    0.0520 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  0
  2 23  1  0
  3 24  1  0
  3 25  1  0
  4 26  1  0
  4 27  1  0
  5 28  1  0
  5 29  1  0
  6 30  1  0
  6 31  1  0
  7 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
  9 36  1  0
  9 37  1  0
 10 38  1  0
 10 39  1  0
 11 40  1  0
 11 41  1  0
 12 42  1  0
 12 43  1  0
 13 44  1  0
 13 45  1  0
 14 46  1  0
 14 47  1  0
 15 48  1  0
 15 49  1  0
 18 50  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
Thiopalmitate	Generator

Chemical Formula

C₁₆H₃₂OS

Average Molecular Weight

272.49

Monoisotopic Molecular Weight

272.217386824

IUPAC Name

hexadecanethioic S-acid

Traditional Name

hexadecanethioic S-acid

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCCCC(S)=O

InChI Identifier

InChI=1S/C16H32OS/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16(17)18/h2-15H2,1H3,(H,17,18)

InChI Key

KPUXJBYSYFEKKB-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as carbothioic s-acids. These are organic acids with the general formula RCS-OH (R=H, organic group).

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carbothioic S-acids

Sub Class

Not Available

Direct Parent

Carbothioic S-acids

Alternative Parents

Substituents

Carbothioic s-acid
Carbodithioic acid
Thiocarboxylic acid or derivatives
Carboxylic acid derivative
Alkylthiol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organosulfur compound
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	7.49	ALOGPS
logP	6.77	ChemAxon
logS	-6.3	ALOGPS
pKa (Strongest Acidic)	0.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	17.07 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	83.5 m³·mol⁻¹	ChemAxon
Polarizability	36.25 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	173.04	30932474
DeepCCS	[M-H]-	169.021	30932474
DeepCCS	[M-2H]-	206.331	30932474
DeepCCS	[M+Na]+	182.126	30932474
AllCCS	[M+H]+	174.7	32859911
AllCCS	[M+H-H2O]+	171.7	32859911
AllCCS	[M+NH4]+	177.5	32859911
AllCCS	[M+Na]+	178.3	32859911
AllCCS	[M-H]-	175.5	32859911
AllCCS	[M+Na-2H]-	177.0	32859911
AllCCS	[M+HCOO]-	178.7	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Thiopalmitic Acid	CCCCCCCCCCCCCCCC(S)=O	2497.9	Standard polar	33892256
Thiopalmitic Acid	CCCCCCCCCCCCCCCC(S)=O	2095.7	Standard non polar	33892256
Thiopalmitic Acid	CCCCCCCCCCCCCCCC(S)=O	2083.7	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Thiopalmitic Acid,1TMS,isomer #1	CCCCCCCCCCCCCCCC(=O)S[Si](C)(C)C	2210.2	Semi standard non polar	33892256
Thiopalmitic Acid,1TMS,isomer #1	CCCCCCCCCCCCCCCC(=O)S[Si](C)(C)C	2220.3	Standard non polar	33892256
Thiopalmitic Acid,1TMS,isomer #1	CCCCCCCCCCCCCCCC(=O)S[Si](C)(C)C	2371.2	Standard polar	33892256
Thiopalmitic Acid,1TBDMS,isomer #1	CCCCCCCCCCCCCCCC(=O)S[Si](C)(C)C(C)(C)C	2441.6	Semi standard non polar	33892256
Thiopalmitic Acid,1TBDMS,isomer #1	CCCCCCCCCCCCCCCC(=O)S[Si](C)(C)C(C)(C)C	2451.2	Standard non polar	33892256
Thiopalmitic Acid,1TBDMS,isomer #1	CCCCCCCCCCCCCCCC(=O)S[Si](C)(C)C(C)(C)C	2460.2	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Thiopalmitic Acid GC-MS (Non-derivatized) - 70eV, Positive	splash10-01pa-7930000000-b0d7e794079bacbe2ef9	2021-09-24	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Thiopalmitic Acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

392199

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for Thiopalmitic Acid (HMDB0259021)

MOL for HMDB0259021 (Thiopalmitic Acid)

3D MOL for HMDB0259021 (Thiopalmitic Acid)

3D SDF for HMDB0259021 (Thiopalmitic Acid)

3D-SDF for HMDB0259021 (Thiopalmitic Acid)

PDB for HMDB0259021 (Thiopalmitic Acid)

3D PDB for HMDB0259021 (Thiopalmitic Acid)

SMILES for HMDB0259021 (Thiopalmitic Acid)

INCHI for HMDB0259021 (Thiopalmitic Acid)

Structure for HMDB0259021 (Thiopalmitic Acid)

3D Structure for HMDB0259021 (Thiopalmitic Acid)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra