Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 22:12:08 UTC
Update Date2021-09-26 23:17:07 UTC
HMDB IDHMDB0259537
Secondary Accession NumbersNone
Metabolite Identification
Common NameN-2-Mdmn
Descriptionmethyl[(4-{[(2-{[1-(methylamino)-2-nitroethenyl]amino}ethyl)sulfanyl]methyl}-1,3-thiazol-2-yl)methyl]amine belongs to the class of organic compounds known as 2,4-disubstituted thiazoles. 2,4-disubstituted thiazoles are compounds containing a thiazole ring substituted at the positions 2 and 3. Based on a literature review very few articles have been published on methyl[(4-{[(2-{[1-(methylamino)-2-nitroethenyl]amino}ethyl)sulfanyl]methyl}-1,3-thiazol-2-yl)methyl]amine. This compound has been identified in human blood as reported by (PMID: 31557052 ). N-2-mdmn is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically N-2-Mdmn is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
Methyl[(4-{[(2-{[1-(methylamino)-2-nitroethenyl]amino}ethyl)sulphanyl]methyl}-1,3-thiazol-2-yl)methyl]amineGenerator
N-2-MonodesmethylnizatidineMeSH
N-DesmethylnizatidineMeSH
Chemical FormulaC11H19N5O2S2
Average Molecular Weight317.43
Monoisotopic Molecular Weight317.09801722
IUPAC Namemethyl[1-({2-[({2-[(methylamino)methyl]-1,3-thiazol-4-yl}methyl)sulfanyl]ethyl}amino)-2-nitroethenyl]amine
Traditional Namemethyl[1-({2-[({2-[(methylamino)methyl]-1,3-thiazol-4-yl}methyl)sulfanyl]ethyl}amino)-2-nitroethenyl]amine
CAS Registry NumberNot Available
SMILES
CNCC1=NC(CSCCNC(NC)=C[N+]([O-])=O)=CS1
InChI Identifier
InChI=1S/C11H19N5O2S2/c1-12-5-11-15-9(8-20-11)7-19-4-3-14-10(13-2)6-16(17)18/h6,8,12-14H,3-5,7H2,1-2H3
InChI KeyQDLSRAPBCBFIQC-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 2,4-disubstituted thiazoles. 2,4-Disubstituted thiazoles are compounds containing a thiazole ring substituted at the positions 2 and 3.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassAzoles
Sub ClassThiazoles
Direct Parent2,4-disubstituted thiazoles
Alternative Parents
Substituents
  • 2,4-disubstituted 1,3-thiazole
  • Aralkylamine
  • Heteroaromatic compound
  • C-nitro compound
  • Organic nitro compound
  • Secondary aliphatic amine
  • Organic oxoazanium
  • Secondary amine
  • Thioether
  • Sulfenyl compound
  • Allyl-type 1,3-dipolar organic compound
  • Propargyl-type 1,3-dipolar organic compound
  • Organic 1,3-dipolar compound
  • Dialkylthioether
  • Azacycle
  • Organic oxygen compound
  • Organic zwitterion
  • Amine
  • Organonitrogen compound
  • Organosulfur compound
  • Organopnictogen compound
  • Organic oxide
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-0.26ALOGPS
logP0.39ChemAxon
logS-4ALOGPS
pKa (Strongest Basic)7.84ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area92.12 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity90.54 m³·mol⁻¹ChemAxon
Polarizability33.71 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+162.40830932474
DeepCCS[M-H]-158.95630932474
DeepCCS[M-2H]-193.88130932474
DeepCCS[M+Na]+170.15530932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
N-2-MdmnCNCC1=NC(CSCCNC(NC)=C[N+]([O-])=O)=CS13780.9Standard polar33892256
N-2-MdmnCNCC1=NC(CSCCNC(NC)=C[N+]([O-])=O)=CS12361.0Standard non polar33892256
N-2-MdmnCNCC1=NC(CSCCNC(NC)=C[N+]([O-])=O)=CS12961.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
N-2-Mdmn,1TMS,isomer #1CNC(=C[N+](=O)[O-])NCCSCC1=CSC(CN(C)[Si](C)(C)C)=N13043.9Semi standard non polar33892256
N-2-Mdmn,1TMS,isomer #1CNC(=C[N+](=O)[O-])NCCSCC1=CSC(CN(C)[Si](C)(C)C)=N12708.2Standard non polar33892256
N-2-Mdmn,1TMS,isomer #1CNC(=C[N+](=O)[O-])NCCSCC1=CSC(CN(C)[Si](C)(C)C)=N14250.6Standard polar33892256
N-2-Mdmn,1TMS,isomer #2CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])NC)[Si](C)(C)C)=CS13010.6Semi standard non polar33892256
N-2-Mdmn,1TMS,isomer #2CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])NC)[Si](C)(C)C)=CS12727.4Standard non polar33892256
N-2-Mdmn,1TMS,isomer #2CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])NC)[Si](C)(C)C)=CS14240.6Standard polar33892256
N-2-Mdmn,1TMS,isomer #3CNCC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C)=CS13015.8Semi standard non polar33892256
N-2-Mdmn,1TMS,isomer #3CNCC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C)=CS12710.0Standard non polar33892256
N-2-Mdmn,1TMS,isomer #3CNCC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C)=CS14160.9Standard polar33892256
N-2-Mdmn,2TMS,isomer #1CN(CC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C)=CS1)[Si](C)(C)C3072.5Semi standard non polar33892256
N-2-Mdmn,2TMS,isomer #1CN(CC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C)=CS1)[Si](C)(C)C2827.1Standard non polar33892256
N-2-Mdmn,2TMS,isomer #1CN(CC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C)=CS1)[Si](C)(C)C3841.5Standard polar33892256
N-2-Mdmn,2TMS,isomer #2CNC(=C[N+](=O)[O-])N(CCSCC1=CSC(CN(C)[Si](C)(C)C)=N1)[Si](C)(C)C3034.5Semi standard non polar33892256
N-2-Mdmn,2TMS,isomer #2CNC(=C[N+](=O)[O-])N(CCSCC1=CSC(CN(C)[Si](C)(C)C)=N1)[Si](C)(C)C2851.5Standard non polar33892256
N-2-Mdmn,2TMS,isomer #2CNC(=C[N+](=O)[O-])N(CCSCC1=CSC(CN(C)[Si](C)(C)C)=N1)[Si](C)(C)C3897.9Standard polar33892256
N-2-Mdmn,2TMS,isomer #3CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C)[Si](C)(C)C)=CS12940.9Semi standard non polar33892256
N-2-Mdmn,2TMS,isomer #3CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C)[Si](C)(C)C)=CS12907.0Standard non polar33892256
N-2-Mdmn,2TMS,isomer #3CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C)[Si](C)(C)C)=CS13718.4Standard polar33892256
N-2-Mdmn,3TMS,isomer #1CN(CC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C)[Si](C)(C)C)=CS1)[Si](C)(C)C3004.0Semi standard non polar33892256
N-2-Mdmn,3TMS,isomer #1CN(CC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C)[Si](C)(C)C)=CS1)[Si](C)(C)C2995.4Standard non polar33892256
N-2-Mdmn,3TMS,isomer #1CN(CC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C)[Si](C)(C)C)=CS1)[Si](C)(C)C3389.2Standard polar33892256
N-2-Mdmn,1TBDMS,isomer #1CNC(=C[N+](=O)[O-])NCCSCC1=CSC(CN(C)[Si](C)(C)C(C)(C)C)=N13253.2Semi standard non polar33892256
N-2-Mdmn,1TBDMS,isomer #1CNC(=C[N+](=O)[O-])NCCSCC1=CSC(CN(C)[Si](C)(C)C(C)(C)C)=N12938.3Standard non polar33892256
N-2-Mdmn,1TBDMS,isomer #1CNC(=C[N+](=O)[O-])NCCSCC1=CSC(CN(C)[Si](C)(C)C(C)(C)C)=N14317.8Standard polar33892256
N-2-Mdmn,1TBDMS,isomer #2CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])NC)[Si](C)(C)C(C)(C)C)=CS13195.9Semi standard non polar33892256
N-2-Mdmn,1TBDMS,isomer #2CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])NC)[Si](C)(C)C(C)(C)C)=CS12979.5Standard non polar33892256
N-2-Mdmn,1TBDMS,isomer #2CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])NC)[Si](C)(C)C(C)(C)C)=CS14195.8Standard polar33892256
N-2-Mdmn,1TBDMS,isomer #3CNCC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)=CS13194.0Semi standard non polar33892256
N-2-Mdmn,1TBDMS,isomer #3CNCC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)=CS12974.2Standard non polar33892256
N-2-Mdmn,1TBDMS,isomer #3CNCC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)=CS14155.3Standard polar33892256
N-2-Mdmn,2TBDMS,isomer #1CN(CC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)=CS1)[Si](C)(C)C(C)(C)C3473.1Semi standard non polar33892256
N-2-Mdmn,2TBDMS,isomer #1CN(CC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)=CS1)[Si](C)(C)C(C)(C)C3282.8Standard non polar33892256
N-2-Mdmn,2TBDMS,isomer #1CN(CC1=NC(CSCCNC(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)=CS1)[Si](C)(C)C(C)(C)C3890.8Standard polar33892256
N-2-Mdmn,2TBDMS,isomer #2CNC(=C[N+](=O)[O-])N(CCSCC1=CSC(CN(C)[Si](C)(C)C(C)(C)C)=N1)[Si](C)(C)C(C)(C)C3455.8Semi standard non polar33892256
N-2-Mdmn,2TBDMS,isomer #2CNC(=C[N+](=O)[O-])N(CCSCC1=CSC(CN(C)[Si](C)(C)C(C)(C)C)=N1)[Si](C)(C)C(C)(C)C3297.6Standard non polar33892256
N-2-Mdmn,2TBDMS,isomer #2CNC(=C[N+](=O)[O-])N(CCSCC1=CSC(CN(C)[Si](C)(C)C(C)(C)C)=N1)[Si](C)(C)C(C)(C)C3918.4Standard polar33892256
N-2-Mdmn,2TBDMS,isomer #3CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=CS13356.7Semi standard non polar33892256
N-2-Mdmn,2TBDMS,isomer #3CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=CS13301.8Standard non polar33892256
N-2-Mdmn,2TBDMS,isomer #3CNCC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=CS13743.2Standard polar33892256
N-2-Mdmn,3TBDMS,isomer #1CN(CC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=CS1)[Si](C)(C)C(C)(C)C3615.3Semi standard non polar33892256
N-2-Mdmn,3TBDMS,isomer #1CN(CC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=CS1)[Si](C)(C)C(C)(C)C3549.6Standard non polar33892256
N-2-Mdmn,3TBDMS,isomer #1CN(CC1=NC(CSCCN(C(=C[N+](=O)[O-])N(C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=CS1)[Si](C)(C)C(C)(C)C3556.2Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - N-2-Mdmn GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-3930000000-f3c3448c731670756b2d2021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - N-2-Mdmn GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID24022522
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound133957
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]